AT3G14830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004081
Physical Location & Seq
Forward (+)
4982588 .. 4985860
3273 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G14830.4

Sequence Viewer

Length: 1431 bp
ATGTCTATGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACATGGACAAGACTTAGCTGATCGACTTGCTCAAGGATTTACGGGTTTGATTCATATAAACCCACCTTCGTTTCCATGGCCGCCGAATCACCATCATCTTCACAAGGCGAAACTGTTCGATCTCGAGTTCCCAACTCAACATTTCAGTGTTATTAAGGATTCTAGGTTTAGTATCAACCAACCAATCAACGGTGTCACAGCGATTCTCGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGACTTTGGTGCTGGGTTGAATGTGATGGTCCAACAGTTCTTCAGGAGGTTGCCTATACCGTTCTTACACGAGGATAATAACAAGCTTGTTGTCTCTGTGGATGGTGATAAGAGTACAAGGAGCCATAGAGCTTATGTGATCACAAAAGGGGATTTGGGAATGGCTACAGAACGGTTGAGGGACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTGCAGATTCCTATCTTAGAGCTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATACGTCATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGATCTCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCTTTCTTCTCCAACTTGGACCACTTCTCTTTCTACGCGATTCAACTCTTCTTTTACCGTTACACTTATCAAAACAGCACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCACTCTGTCCAGCTATATGGTCAAAGCATCGGAGGTGGCTTATGATGTCAATGCTCTCTCTCAATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTATCTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGTGGTCTTCTTCAAGCACAGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCCGAATCACACCAATGGTACATTGGCCTGATAAATCATTTGGGTTGGATCTTTCTCAACCCTTGGCTTGGCGTAGATCCGGACTACTGATGAAACCGACAATTCAAGTCAGTGTATGTCCCACATTCGGTGGAAGCAATCCCGGGATTAAGGCAGAAGTTATTCACTCGTTGAGCGATGACTTGAATCTGATATGTGGCTACGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTAGCTTTTGGTCGGTCGAAATGGAATGGAAACATTGGACGCACGGGAATAGTTGTTAGAGCTGATACTCCACTTGCAAGTATTGGCCAGCCTTCTTTCTCTATCCAGCTTAATAACGCTTTCGAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

52.53

Weight (kDa)

8.4

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 741
AccIII TCCGGA 1 cut(s) 1142
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 1119, 1134
AcoI YGGCCR 2 cut(s) 122, 1384
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 2 cut(s) 310, 1269
AfaI GTAC 2 cut(s) 400, 1083
AfiI CCNNNNNNNGG 4 cut(s) 233, 986, 1131, 1190
AgsI TTSAA 6 cut(s) 41, 304, 747, 1001, 1169, 1249
AjnI CCWGG 1 cut(s) 1018
Alw26I GTCTC 2 cut(s) 382, 705
AlwI GGATC 2 cut(s) 1119, 1134
Ama87I CYCGRG 2 cut(s) 167, 1205
Aor13HI TCCGGA 1 cut(s) 1142
AoxI GGCC 3 cut(s) 122, 1088, 1384
ApeKI GCWGC 2 cut(s) 545, 632
ApoI RAATTY 1 cut(s) 694
Asp700I GAANNNNTTC 3 cut(s) 36, 158, 1224
AspS9I GGNCC 2 cut(s) 313, 722
AsuC2I CCSGG 2 cut(s) 1206, 1207
AsuHPI GGTGA 2 cut(s) 125, 401
AvaI CYCGRG 2 cut(s) 167, 1205
AvaII GGWCC 2 cut(s) 313, 722
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BalI TGGCCA 1 cut(s) 1386
BauI CACGAG 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 986
BbvI GCAGC 2 cut(s) 532, 644
BccI CCATC 4 cut(s) 144, 304, 380, 683
BciT130I CCWGG 1 cut(s) 1020
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 2 cut(s) 1206, 1207
BcoDI GTCTC 2 cut(s) 382, 705
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 2 cut(s) 450, 1299
BglII AGATCT 2 cut(s) 14, 643
BisI GCNGC 3 cut(s) 125, 546, 633
BlsI GCNGC 3 cut(s) 126, 547, 634
Bme1390I CCNGG 3 cut(s) 1020, 1206, 1207
Bme18I GGWCC 2 cut(s) 313, 722
BmeT110I CYCGRG 2 cut(s) 167, 1205
BmgT120I GGNCC 2 cut(s) 313, 722
BmiI GGNNCC 2 cut(s) 407, 1063
BmrFI CCNGG 3 cut(s) 1020, 1206, 1207
BmsI GCATC 1 cut(s) 859
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 630, 662
BpmI CTGGAG 1 cut(s) 670
BpuEI CTTGAG 1 cut(s) 60
BpuMI CCSGG 2 cut(s) 1206, 1207
BsaBI GATNNNNATC 1 cut(s) 534
BsaJI CCNNGG 3 cut(s) 119, 1125, 1205
BsaWI WCCGGW 1 cut(s) 1142
Bsc4I CCNNNNNNNGG 4 cut(s) 233, 986, 1131, 1190
Bse8I GATNNNNATC 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 1142
BseBI CCWGG 1 cut(s) 1020
BseDI CCNNGG 3 cut(s) 119, 1125, 1205
BseGI GGATG 2 cut(s) 391, 1279
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 4 cut(s) 233, 986, 1131, 1190
BseMII CTCAG 2 cut(s) 483, 504
BseRI GAGGAG 2 cut(s) 530, 654
BseXI GCAGC 2 cut(s) 532, 644
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 741
Bsh1285I CGRYCG 1 cut(s) 1316
BshFI GGCC 3 cut(s) 124, 1090, 1386
BsiEI CGRYCG 1 cut(s) 1316
BsiHKCI CYCGRG 2 cut(s) 167, 1205
BsiSI CCGG 2 cut(s) 1143, 1206
BslFI GGGAC 2 cut(s) 479, 1167
BslI CCNNNNNNNGG 4 cut(s) 233, 986, 1131, 1190
BsmAI GTCTC 2 cut(s) 382, 705
BsmBI CGTCTC 1 cut(s) 705
BsmFI GGGAC 2 cut(s) 479, 1167
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 3 cut(s) 124, 1090, 1386
BsoBI CYCGRG 2 cut(s) 167, 1205
Bsp13I TCCGGA 1 cut(s) 1142
Bsp143I GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 125
BspANI GGCC 3 cut(s) 124, 1090, 1386
BspCNI CTCAG 2 cut(s) 482, 505
BspEI TCCGGA 1 cut(s) 1142
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 2 cut(s) 407, 1063
BspPI GGATC 2 cut(s) 1119, 1134
BssECI CCNNGG 3 cut(s) 119, 1125, 1205
BssMI GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
BssSI CACGAG 1 cut(s) 353
BssT1I CCWWGG 2 cut(s) 119, 1125
Bst2BI CACGAG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 1020
Bst4CI ACNGT 7 cut(s) 159, 236, 321, 345, 459, 602, 762
Bst6I CTCTTC 2 cut(s) 27, 756
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstC8I GCNNGC 3 cut(s) 685, 898, 1388
BstDEI CTNAG 5 cut(s) 58, 469, 480, 513, 539
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 391, 1279
BstFNI CGCG 1 cut(s) 741
BstKTI GATC 8 cut(s) 17, 67, 166, 426, 566, 646, 1114, 1142
BstMAI GTCTC 2 cut(s) 382, 705
BstMBI GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
BstMCI CGRYCG 1 cut(s) 1316
BstMWI GCNNNNNNNGC 2 cut(s) 1274, 1301
BstNI CCWGG 1 cut(s) 1020
BstSCI CCNGG 3 cut(s) 1018, 1204, 1205
BstSFI CTRYAG 2 cut(s) 450, 1299
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 2 cut(s) 532, 644
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 4 cut(s) 14, 643, 1111, 1139
BstXI CCANNNNNNTGG 1 cut(s) 840
BstYI RGATCY 4 cut(s) 14, 643, 1111, 1139
BsuRI GGCC 3 cut(s) 124, 1090, 1386
BtgI CCRYGG 1 cut(s) 119
BtgZI GCGATG 2 cut(s) 702, 1254
BtsCI GGATG 2 cut(s) 391, 1279
BtsIMutI CAGTG 2 cut(s) 196, 1180
Cac8I GCNNGC 3 cut(s) 685, 898, 1388
Cfr13I GGNCC 2 cut(s) 313, 722
Cfr9I CCCGGG 1 cut(s) 1205
CseI GACGC 1 cut(s) 1347
Csp6I GTAC 2 cut(s) 399, 1082
CviAII CATG 3 cut(s) 47, 120, 1027
CviQI GTAC 2 cut(s) 399, 1082
DdeI CTNAG 5 cut(s) 58, 469, 480, 513, 539
DpnI GATC 8 cut(s) 16, 66, 165, 425, 565, 645, 1113, 1141
DpnII GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
EaeI YGGCCR 2 cut(s) 122, 1384
Eam1104I CTCTTC 2 cut(s) 27, 756
EarI CTCTTC 2 cut(s) 27, 756
Eco130I CCWWGG 2 cut(s) 119, 1125
Eco47I GGWCC 2 cut(s) 313, 722
Eco57I CTGAAG 2 cut(s) 310, 1269
Eco88I CYCGRG 2 cut(s) 167, 1205
EcoRII CCWGG 1 cut(s) 1018
EcoT14I CCWWGG 2 cut(s) 119, 1125
EcoT22I ATGCAT 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 119, 1125
Esp3I CGTCTC 1 cut(s) 705
FaeI CATG 3 cut(s) 50, 123, 1030
FaqI GGGAC 2 cut(s) 479, 1167
FatI CATG 3 cut(s) 46, 119, 1026
FauNDI CATATG 1 cut(s) 940
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 125, 546, 633
FokI GGATG 2 cut(s) 398, 1266
Fsp4HI GCNGC 3 cut(s) 125, 546, 633
FspBI CTAG 1 cut(s) 207
GluI GCNGC 3 cut(s) 125, 546, 633
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 670
HaeIII GGCC 3 cut(s) 124, 1090, 1386
HapII CCGG 2 cut(s) 1143, 1206
HgaI GACGC 1 cut(s) 1347
Hin1II CATG 3 cut(s) 50, 123, 1030
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 3 cut(s) 24, 368, 660
HinfI GANTC 9 cut(s) 94, 130, 203, 247, 467, 530, 743, 1068, 1249
HpaII CCGG 2 cut(s) 1143, 1206
HphI GGTGA 2 cut(s) 125, 401
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 4 cut(s) 514, 855, 1254, 1430
Hpy188III TCNNGA 5 cut(s) 167, 251, 328, 649, 1143
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 4 cut(s) 120, 947, 1293, 1401
HpyCH4III ACNGT 7 cut(s) 159, 236, 321, 345, 459, 602, 762
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 6 cut(s) 527, 683, 820, 916, 1277, 1376
HpyF10VI GCNNNNNNNGC 2 cut(s) 1274, 1301
HpyF3I CTNAG 5 cut(s) 58, 469, 480, 513, 539
HpySE526I ACGT 1 cut(s) 584
Hsp92II CATG 3 cut(s) 50, 123, 1030
Kpn2I TCCGGA 1 cut(s) 1142
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
LmnI GCTCC 1 cut(s) 405
Lsp1109I GCAGC 2 cut(s) 532, 644
LweI GCATC 1 cut(s) 859
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 4 cut(s) 238, 502, 762, 1037
MalI GATC 8 cut(s) 16, 66, 165, 425, 565, 645, 1113, 1141
MboI GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
MboII GAAGA 9 cut(s) 44, 134, 316, 573, 701, 743, 820, 986, 989
MfeI CAATTG 2 cut(s) 576, 932
MflI RGATCY 4 cut(s) 14, 643, 1111, 1139
MlsI TGGCCA 1 cut(s) 1386
MluCI AATT 5 cut(s) 576, 694, 917, 932, 1164
MluNI TGGCCA 1 cut(s) 1386
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 3 cut(s) 340, 739, 1089
Mox20I TGGCCA 1 cut(s) 1386
Mph1103I ATGCAT 1 cut(s) 822
MroI TCCGGA 1 cut(s) 1142
MroXI GAANNNNTTC 3 cut(s) 36, 158, 1224
MscI TGGCCA 1 cut(s) 1386
MseI TTAA 3 cut(s) 198, 1212, 1410
MslI CAYNNNNRTG 2 cut(s) 189, 1076
Msp20I TGGCCA 1 cut(s) 1386
MspI CCGG 2 cut(s) 1143, 1206
MspR9I CCNGG 3 cut(s) 1020, 1206, 1207
MunI CAATTG 2 cut(s) 576, 932
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 1 cut(s) 1020
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 2 cut(s) 1274, 1301
NciI CCSGG 2 cut(s) 1206, 1207
NcoI CCATGG 1 cut(s) 119
NdeI CATATG 1 cut(s) 940
NdeII GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
NlaIII CATG 3 cut(s) 50, 123, 1030
NlaIV GGNNCC 2 cut(s) 407, 1063
NmuCI GTSAC 1 cut(s) 238
NsiI ATGCAT 1 cut(s) 822
PaeR7I CTCGAG 1 cut(s) 167
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 3 cut(s) 36, 158, 1224
PfeI GAWTC 8 cut(s) 94, 130, 203, 247, 530, 743, 1068, 1249
PkrI GCNGC 3 cut(s) 126, 547, 634
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 1018
PspN4I GGNNCC 2 cut(s) 407, 1063
PspPI GGNCC 2 cut(s) 313, 722
PsrI GAACNNNNNNTAC 2 cut(s) 565, 597
PsuI RGATCY 4 cut(s) 14, 643, 1111, 1139
RsaI GTAC 2 cut(s) 400, 1083
RsaNI GTAC 2 cut(s) 399, 1082
RseI CAYNNNNRTG 2 cut(s) 189, 1076
SaqAI TTAA 3 cut(s) 198, 1212, 1410
SatI GCNGC 3 cut(s) 125, 546, 633
Sau3AI GATC 8 cut(s) 14, 64, 163, 423, 563, 643, 1111, 1139
Sau96I GGNCC 2 cut(s) 313, 722
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 3 cut(s) 1020, 1206, 1207
SfaNI GCATC 1 cut(s) 859
SfcI CTRYAG 2 cut(s) 450, 1299
Sfr274I CTCGAG 1 cut(s) 167
SinI GGWCC 2 cut(s) 313, 722
SlaI CTCGAG 1 cut(s) 167
SmaI CCCGGG 1 cut(s) 1207
SmiMI CAYNNNNRTG 2 cut(s) 189, 1076
SmlI CTYRAG 2 cut(s) 75, 167
SmoI CTYRAG 2 cut(s) 75, 167
Sse9I AATT 5 cut(s) 576, 694, 917, 932, 1164
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 1018, 1204, 1205
StyI CCWWGG 2 cut(s) 119, 1125
TaaI ACNGT 7 cut(s) 159, 236, 321, 345, 459, 602, 762
TaiI ACGT 1 cut(s) 587
TaqI TCGA 7 cut(s) 67, 162, 168, 252, 671, 1316, 1422
TaqII GACCGA 1 cut(s) 1302
TasI AATT 5 cut(s) 576, 694, 917, 932, 1164
TatI WGTACW 1 cut(s) 398
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 8 cut(s) 94, 130, 203, 247, 530, 743, 1068, 1249
Tru1I TTAA 3 cut(s) 198, 1212, 1410
Tru9I TTAA 3 cut(s) 198, 1212, 1410
TscAI CASTG 2 cut(s) 196, 1180
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 2 cut(s) 545, 632
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 86, 615, 1169
TspMI CCCGGG 1 cut(s) 1205
TspRI CASTG 2 cut(s) 196, 1180
VpaK11BI GGWCC 2 cut(s) 313, 722
XapI RAATTY 1 cut(s) 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 1083
XhoI CTCGAG 1 cut(s) 167
XmaI CCCGGG 1 cut(s) 1205
XmnI GAANNNNTTC 3 cut(s) 36, 158, 1224
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.