MD03G1246300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
33332574 .. 33337728
5155 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1246300.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGTCGGTCGAGAGGTCCTTCGAAGCTTGGGAGGAGGTGCAGCGCCATGGGCAGGACTTGGCGGATCGCCTCACGCAGGGATTCACGGGTTTGATTCAGTCTCATATCACTCCACCGTCGTTTCATTGGCCAAACCCTAACACATCGAAGCTCTTCGACCTTGAATTCCCGAACCAGAGTTTTGGTAAGAGGGATTTTGTTGGGTTGGTGGCTGAGAACCCGGGCATTAATGGGGTTTCGGCGATTCTGGATATTGGTAACAGGATTGGGCAAGCAGGGGCGGATTTTGGTGCGTGCTTGAATGGGATGGTTCAGCAGTTCTTTAGGACCTTACCTGTACCGTTTAGGCATGATGAGAATGTTGATTTGGCGGTAATTCGGATGGATTCAGATAAGGTTAAGCAGAGAGCCGATATGATTTTGAGTGGTAAGGAAGATTTGGGGCCACTGAAGGAACGGTTGAAGGATTTCAGGGTTGTGGAGAGTGACGGTGGCTCTGATGGTGTGGTGGATGAAGAACTTGGTGGCTTGAATATAAGGTCCGCTGGTCTTCTGGGTAGACCGCTGGGGACTGTAAATACCACCACAAGTTATGATACTAGAACCCGTAAGCTGGAAAGTTCTTTCCTTGCAAGGGGAGACTTATGGAGAGTAGAGGCTTCTAGTGGCAGTTCCACATCTAGAAATGACAATTCATCACTTTTCCTTGTCCAGCTTGGGCCGGTACTCTTTGTTCGTGATGCAACTCTTCTTCTTCCTGTGCATTTGTCAAAGCAACACCTACTTTGGTATGGCTATGATAAGAAGAATGGGATGCATTCTCTTTGTCCGGCTGTGTGGTCAAAACACAGAAGGTGGCTCTTAATGTCAATGGTCTGCCTGAAACCTTTAGCCTGTTCATTTGTTGATTTACAGTTTCCAAACGGGCAATTTACATATATATCTGGTGAAGGACTTAGTACAAGTGCTTTCTTACCTCTTTGTGGTGGCCTTCTACAAGCTCAAGGTCAATATCCTGGAGAAATGAGATTCAGTTTCTCTCGCAAGAATAAGTGGGGAACACGCATCACACCTGTGATACAATGGCCAGACAAGTCTTTTACACTGGGTCTTTCACAAGCCTTGGCTTGGCAGCGATCTGGTCTCATGGTGAGGCCTACAATACAGTTCAGTTTATGTCCCACTTTTGGCGGAAGCAATCCTGGTTTGCGGGCAGAGCTCATTCACTCAGTGAAGGAACAGCTGAATCTGATATGTGGTTGTGCATTCACAGCACATCCTTCTGCTTTTGCTTCAGTGTCGGTTGGCAGATCCAAGTGGAATGGAAATGTCGGGGACTCGGGGATCGTATTAAGAGTGGATACTCCTCTTTCCAATGTTGGTCGACCTTACTTCTCGATTCAGTTAAATAATGTTCTCGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

52.44

Weight (kDa)

8.57

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 559, 1384
AciI CCGC 7 cut(s) 62, 281, 371, 543, 563, 1191, 1210
AclWI GGATC 3 cut(s) 72, 1305, 1352
AcoI YGGCCR 2 cut(s) 128, 1085
AcsI RAATTY 2 cut(s) 164, 1421
AcuI CTGAAG 2 cut(s) 470, 1278
AdeI CACNNNGTG 1 cut(s) 1231
AfaI GTAC 3 cut(s) 339, 726, 961
AfiI CCNNNNNNNGG 7 cut(s) 52, 76, 613, 634, 983, 1128, 1187
AgsI TTSAA 4 cut(s) 164, 301, 463, 532
AjnI CCWGG 2 cut(s) 1015, 1201
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AleI CACNNNNGTG 1 cut(s) 1073
AluBI AGCT 7 cut(s) 26, 151, 613, 715, 1001, 1219, 1243
AluI AGCT 7 cut(s) 26, 151, 613, 715, 1001, 1219, 1243
Alw21I GWGCWC 1 cut(s) 1221
Alw26I GTCTC 3 cut(s) 105, 633, 1148
AlwI GGATC 3 cut(s) 72, 1305, 1352
Ama87I CYCGRG 2 cut(s) 220, 1339
AoxI GGCC 6 cut(s) 128, 443, 719, 988, 1085, 1154
ApeKI GCWGC 2 cut(s) 40, 1132
ApoI RAATTY 2 cut(s) 164, 1421
AseI ATTAAT 1 cut(s) 228
Asp700I GAANNNNTTC 2 cut(s) 152, 467
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 5 cut(s) 15, 327, 443, 540, 719
AsuC2I CCSGG 2 cut(s) 221, 222
AsuHPI GGTGA 2 cut(s) 959, 1162
AsuII TTCGAA 1 cut(s) 21
AvaI CYCGRG 2 cut(s) 220, 1339
AvaII GGWCC 3 cut(s) 15, 327, 540
BalI TGGCCA 2 cut(s) 130, 1087
BanII GRGCYC 1 cut(s) 1221
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 1221
BbvI GCAGC 2 cut(s) 52, 1144
BccI CCATC 3 cut(s) 301, 376, 494
BciT130I CCWGG 2 cut(s) 1017, 1203
BciVI GTATCC 1 cut(s) 1354
BcnI CCSGG 2 cut(s) 221, 222
BcoDI GTCTC 3 cut(s) 105, 633, 1148
BfaI CTAG 3 cut(s) 600, 663, 681
BfoI RGCGCY 1 cut(s) 46
BfuI GTATCC 1 cut(s) 1354
BisI GCNGC 2 cut(s) 41, 1133
BlsI GCNGC 2 cut(s) 42, 1134
Bme1390I CCNGG 4 cut(s) 221, 222, 1017, 1203
Bme18I GGWCC 3 cut(s) 15, 327, 540
BmeT110I CYCGRG 2 cut(s) 220, 1339
BmgT120I GGNCC 5 cut(s) 15, 327, 443, 540, 719
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 4 cut(s) 221, 222, 1017, 1203
BmrI ACTGGG 1 cut(s) 1115
BmsI GCATC 3 cut(s) 730, 804, 1074
BmuI ACTGGG 1 cut(s) 1115
BpiI GAAGAC 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 1038
Bpu14I TTCGAA 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 987
BpuMI CCSGG 2 cut(s) 221, 222
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 3 cut(s) 46, 220, 1122
Bsc4I CCNNNNNNNGG 7 cut(s) 52, 76, 613, 634, 983, 1128, 1187
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 1110
BseBI CCWGG 2 cut(s) 1017, 1203
BseDI CCNNGG 3 cut(s) 46, 220, 1122
BseGI GGATG 5 cut(s) 312, 387, 517, 819, 1276
BseLI CCNNNNNNNGG 7 cut(s) 52, 76, 613, 634, 983, 1128, 1187
BseMII CTCAG 2 cut(s) 204, 1242
BseNI ACTGG 1 cut(s) 1110
BseRI GAGGAG 2 cut(s) 47, 1356
BseXI GCAGC 2 cut(s) 52, 1144
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 6 cut(s) 130, 445, 721, 990, 1087, 1156
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 1221
BsiHKCI CYCGRG 2 cut(s) 220, 1339
BsiSI CCGG 3 cut(s) 221, 722, 830
BslFI GGGAC 3 cut(s) 583, 1164, 1349
BslI CCNNNNNNNGG 7 cut(s) 52, 76, 613, 634, 983, 1128, 1187
BsmAI GTCTC 3 cut(s) 105, 633, 1148
BsmFI GGGAC 3 cut(s) 583, 1164, 1349
BsmI GAATGC 2 cut(s) 817, 1265
BsnI GGCC 6 cut(s) 130, 445, 721, 990, 1087, 1156
Bso31I GGTCTC 1 cut(s) 1148
BsoBI CYCGRG 2 cut(s) 220, 1339
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 1221
Bsp143I GATC 4 cut(s) 64, 1136, 1310, 1344
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 7 cut(s) 62, 281, 371, 543, 563, 1191, 1210
BspANI GGCC 6 cut(s) 130, 445, 721, 990, 1087, 1156
BspCNI CTCAG 2 cut(s) 205, 1241
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 3 cut(s) 72, 1305, 1352
BspQI GCTCTTC 1 cut(s) 158
BspT104I TTCGAA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 1148
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 1 cut(s) 1110
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 3 cut(s) 46, 220, 1122
BssMI GATC 4 cut(s) 64, 1136, 1310, 1344
BssT1I CCWWGG 2 cut(s) 46, 1122
Bst2UI CCWGG 2 cut(s) 1017, 1203
Bst4CI ACNGT 7 cut(s) 117, 342, 459, 491, 574, 915, 1167
Bst6I CTCTTC 2 cut(s) 158, 753
BstBI TTCGAA 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 273, 295, 1212
BstDEI CTNAG 3 cut(s) 213, 956, 1228
BstDSI CCRYGG 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 5 cut(s) 312, 387, 517, 819, 1276
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 4 cut(s) 67, 1139, 1313, 1347
BstMAI GTCTC 3 cut(s) 105, 633, 1148
BstMBI GATC 4 cut(s) 64, 1136, 1310, 1344
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 49, 1216, 1271
BstNI CCWGG 2 cut(s) 1017, 1203
BstSCI CCNGG 4 cut(s) 219, 220, 1015, 1201
BstV1I GCAGC 2 cut(s) 52, 1144
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 1 cut(s) 1310
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 1 cut(s) 1310
BsuI GTATCC 1 cut(s) 1354
BsuRI GGCC 6 cut(s) 130, 445, 721, 990, 1087, 1156
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 5 cut(s) 312, 387, 517, 819, 1276
BtsIMutI CAGTG 4 cut(s) 446, 1103, 1236, 1302
Cac8I GCNNGC 3 cut(s) 273, 295, 1212
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 5 cut(s) 15, 327, 443, 540, 719
Cfr9I CCCGGG 1 cut(s) 220
Csp6I GTAC 3 cut(s) 338, 725, 960
CviAII CATG 3 cut(s) 47, 350, 1147
CviQI GTAC 3 cut(s) 338, 725, 960
DdeI CTNAG 3 cut(s) 213, 956, 1228
DpnI GATC 4 cut(s) 66, 1138, 1312, 1346
DpnII GATC 4 cut(s) 64, 1136, 1310, 1344
DraIII CACNNNGTG 1 cut(s) 1231
EaeI YGGCCR 2 cut(s) 128, 1085
Eam1104I CTCTTC 2 cut(s) 158, 753
EarI CTCTTC 2 cut(s) 158, 753
EciI GGCGGA 3 cut(s) 77, 296, 1206
Ecl136II GAGCTC 1 cut(s) 1219
Eco130I CCWWGG 2 cut(s) 46, 1122
Eco147I AGGCCT 1 cut(s) 1156
Eco24I GRGCYC 1 cut(s) 1221
Eco31I GGTCTC 1 cut(s) 1148
Eco47I GGWCC 3 cut(s) 15, 327, 540
Eco53kI GAGCTC 1 cut(s) 1219
Eco57I CTGAAG 2 cut(s) 470, 1278
Eco88I CYCGRG 2 cut(s) 220, 1339
EcoICRI GAGCTC 1 cut(s) 1219
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoO109I RGGNCCY 2 cut(s) 15, 327
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 1015, 1201
EcoT14I CCWWGG 2 cut(s) 46, 1122
EcoT22I ATGCAT 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 1221
ErhI CCWWGG 2 cut(s) 46, 1122
FaeI CATG 3 cut(s) 50, 353, 1150
FaqI GGGAC 3 cut(s) 583, 1164, 1349
FatI CATG 3 cut(s) 46, 349, 1146
FauI CCCGC 1 cut(s) 1203
FblI GTMKAC 2 cut(s) 559, 1384
Fnu4HI GCNGC 2 cut(s) 41, 1133
FokI GGATG 5 cut(s) 319, 394, 524, 826, 1263
FriOI GRGCYC 1 cut(s) 1221
Fsp4HI GCNGC 2 cut(s) 41, 1133
FspBI CTAG 3 cut(s) 600, 663, 681
GlaI GCGC 1 cut(s) 44
GluI GCNGC 2 cut(s) 41, 1133
GsaI CCCAGC 1 cut(s) 569
GsuI CTGGAG 1 cut(s) 1038
HaeII RGCGCY 1 cut(s) 46
HaeIII GGCC 6 cut(s) 130, 445, 721, 990, 1087, 1156
HapII CCGG 3 cut(s) 221, 722, 830
HhaI GCGC 1 cut(s) 45
Hin1II CATG 3 cut(s) 50, 353, 1150
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 1385
HindII GTYRAC 1 cut(s) 1385
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 8 cut(s) 81, 94, 244, 386, 1029, 1246, 1337, 1399
HpaII CCGG 3 cut(s) 221, 722, 830
HphI GGTGA 2 cut(s) 959, 1162
Hpy166II GTNNAC 2 cut(s) 560, 1385
Hpy188I TCNGA 4 cut(s) 381, 391, 499, 1251
Hpy188III TCNNGA 7 cut(s) 10, 169, 248, 681, 737, 1396, 1418
Hpy8I GTNNAC 2 cut(s) 560, 1385
Hpy99I CGWCG 1 cut(s) 121
HpyAV CCTTC 8 cut(s) 28, 445, 457, 846, 944, 1001, 1228, 1290
HpyCH4III ACNGT 7 cut(s) 117, 342, 459, 491, 574, 915, 1167
HpyCH4V TGCA 6 cut(s) 40, 632, 743, 763, 817, 1265
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 1216, 1271
HpyF3I CTNAG 3 cut(s) 213, 956, 1228
Hsp92II CATG 3 cut(s) 50, 353, 1150
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 4 cut(s) 64, 1136, 1310, 1344
LguI GCTCTTC 1 cut(s) 158
Lsp1109I GCAGC 2 cut(s) 52, 1144
LweI GCATC 3 cut(s) 730, 804, 1074
MaeI CTAG 3 cut(s) 600, 663, 681
MaeIII GTNAC 2 cut(s) 257, 485
MalI GATC 4 cut(s) 66, 1138, 1312, 1346
MboI GATC 4 cut(s) 64, 1136, 1310, 1344
MboII GAAGA 8 cut(s) 145, 446, 527, 542, 740, 743, 746, 817
MflI RGATCY 1 cut(s) 1310
MhlI GDGCHC 1 cut(s) 1221
MlsI TGGCCA 2 cut(s) 130, 1087
MluCI AATT 5 cut(s) 164, 375, 691, 929, 1421
MluNI TGGCCA 2 cut(s) 130, 1087
MlyI GAGTC 1 cut(s) 1331
MnlI CCTC 9 cut(s) 6, 25, 28, 80, 183, 649, 987, 1146, 1377
Mox20I TGGCCA 2 cut(s) 130, 1087
Mph1103I ATGCAT 1 cut(s) 819
MroXI GAANNNNTTC 2 cut(s) 152, 467
MscI TGGCCA 2 cut(s) 130, 1087
MseI TTAA 5 cut(s) 228, 399, 863, 1352, 1406
MslI CAYNNNNRTG 1 cut(s) 1073
Msp20I TGGCCA 2 cut(s) 130, 1087
MspA1I CMGCKG 3 cut(s) 545, 565, 1243
MspI CCGG 3 cut(s) 221, 722, 830
MspR9I CCNGG 4 cut(s) 221, 222, 1017, 1203
Mva1269I GAATGC 2 cut(s) 817, 1265
MvaI CCWGG 2 cut(s) 1017, 1203
MwoI GCNNNNNNNGC 3 cut(s) 49, 1216, 1271
NciI CCSGG 2 cut(s) 221, 222
NcoI CCATGG 1 cut(s) 46
NdeII GATC 4 cut(s) 64, 1136, 1310, 1344
NlaIII CATG 3 cut(s) 50, 353, 1150
NlaIV GGNNCC 1 cut(s) 444
NmuCI GTSAC 1 cut(s) 485
NsiI ATGCAT 1 cut(s) 819
NspV TTCGAA 1 cut(s) 21
OliI CACNNNNGTG 1 cut(s) 1073
PceI AGGCCT 1 cut(s) 1156
PciSI GCTCTTC 1 cut(s) 158
PctI GAATGC 2 cut(s) 817, 1265
PdmI GAANNNNTTC 2 cut(s) 152, 467
PfeI GAWTC 7 cut(s) 81, 94, 244, 386, 1029, 1246, 1399
PfoI TCCNGGA 1 cut(s) 1015
PkrI GCNGC 2 cut(s) 42, 1134
PleI GAGTC 1 cut(s) 1331
PpsI GAGTC 1 cut(s) 1331
PpuMI RGGWCCY 2 cut(s) 15, 327
PshBI ATTAAT 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 1221
Psp5II RGGWCCY 2 cut(s) 15, 327
Psp6I CCWGG 2 cut(s) 1015, 1201
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 2 cut(s) 1015, 1201
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 5 cut(s) 15, 327, 443, 540, 719
PspPPI RGGWCCY 2 cut(s) 15, 327
PsrI GAACNNNNNNTAC 2 cut(s) 717, 749
PsuI RGATCY 1 cut(s) 1310
PvuII CAGCTG 1 cut(s) 1243
RsaI GTAC 3 cut(s) 339, 726, 961
RsaNI GTAC 3 cut(s) 338, 725, 960
RseI CAYNNNNRTG 1 cut(s) 1073
SacI GAGCTC 1 cut(s) 1221
SalI GTCGAC 1 cut(s) 1383
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 5 cut(s) 228, 399, 863, 1352, 1406
SatI GCNGC 2 cut(s) 41, 1133
Sau3AI GATC 4 cut(s) 64, 1136, 1310, 1344
Sau96I GGNCC 5 cut(s) 15, 327, 443, 540, 719
SchI GAGTC 1 cut(s) 1331
ScrFI CCNGG 4 cut(s) 221, 222, 1017, 1203
SduI GDGCHC 1 cut(s) 1221
SfaNI GCATC 3 cut(s) 730, 804, 1074
SfuI TTCGAA 1 cut(s) 21
SinI GGWCC 3 cut(s) 15, 327, 540
SmaI CCCGGG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 1073
SmlI CTYRAG 1 cut(s) 1002
SmoI CTYRAG 1 cut(s) 1002
Sse9I AATT 5 cut(s) 164, 375, 691, 929, 1421
SseBI AGGCCT 1 cut(s) 1156
SsiI CCGC 7 cut(s) 62, 281, 371, 543, 563, 1191, 1210
SspMI CTAG 3 cut(s) 600, 663, 681
SstI GAGCTC 1 cut(s) 1221
StuI AGGCCT 1 cut(s) 1156
StyD4I CCNGG 4 cut(s) 219, 220, 1015, 1201
StyI CCWWGG 2 cut(s) 46, 1122
TaaI ACNGT 7 cut(s) 117, 342, 459, 491, 574, 915, 1167
TaqI TCGA 7 cut(s) 9, 21, 146, 156, 1384, 1397, 1419
TasI AATT 5 cut(s) 164, 375, 691, 929, 1421
TatI WGTACW 1 cut(s) 959
TfiI GAWTC 7 cut(s) 81, 94, 244, 386, 1029, 1246, 1399
Tru1I TTAA 5 cut(s) 228, 399, 863, 1352, 1406
Tru9I TTAA 5 cut(s) 228, 399, 863, 1352, 1406
TscAI CASTG 4 cut(s) 453, 1110, 1236, 1302
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 40, 1132
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 113, 528, 684, 888
TspMI CCCGGG 1 cut(s) 220
TspRI CASTG 4 cut(s) 453, 1110, 1236, 1302
VpaK11BI GGWCC 3 cut(s) 15, 327, 540
VspI ATTAAT 1 cut(s) 228
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 2 cut(s) 164, 1421
XbaI TCTAGA 1 cut(s) 680
XmaI CCCGGG 1 cut(s) 220
XmiI GTMKAC 2 cut(s) 559, 1384
XmnI GAANNNNTTC 2 cut(s) 152, 467
XspI CTAG 3 cut(s) 600, 663, 681
Zsp2I ATGCAT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.