Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004081

Physical Location & Seq

Genomic Coordinates Forward (+)

10327368 .. 10330133

Gene Structure 2766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0116400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCGCAAAGTCTGCAACTCTGCAAGGACCCTCTCATCTGGCGCAAGATTGACATGCGCAACGATGGCGATCTCGAAGACATAGACTACGACTTGGAGGAGATGTGCCGCCACGCCGTTAATCGGAGCTCTGGTAATCTGGTCGATATTAACATTGAGTACTTCGTCACCGATGAGCTGCTTGAGTATATCACTGATAGCTCGAGTGGAATCAGACGTCTCCGACTGTTGTGTTGTGATGACATATCAGATGCGGGATTGAGTAAAGTGGCTTTAAAACTTCCATTGTTGGAGGAACTTGACATTTCTCTATGCGATAATATCTCGCATGAAGCTGTAGAAGTGCTTGGCCGCTCTTGCCCCTTTTTGAAATCATTCAAGTTCAACAAAGAGTGGTGTCAGTTTTCACAAGACTGCCGCGGGCCATACGAGTTTCATTTCAGTGATTATTATTCACGTATTCTTGATGCTTACCGAAAAAGAAATCAAGTACCCTTTCATTGGAATGTGGATTATGATGCAGAGGCACTTGCTATAGCAGGAACCATGCATGGTTTACGACACCTCCAGCTTTTTGGGAATAAGTTGACAGATGATGGCTTGACAAGCATTCTTGATTGTTGTCCTGATCTTGTCTCACTTGACCTGCGCCATTGTTTCATTCTCAATATGGAGGGAGATTGGAGAAGTACATGTGCTGAACGAATTAAGAAATTGTGGCTTCCCCATGATTCCACTGAGGGCAAAGAATTTGTAGCTAGATCTGAAGCTTATTGTTTTAAATGGACAGAACTCCCAGACAAAGTTACGGCATCAATACTGTCAAGGCTTGGAGGGATTGACATCCTCACTTCCGCTCAGAAGGTCGGCTCCAAGTGGTTCAAAATATGCAAGGACCCTCTGAAGTGGCGCACCATTGACATGCGCAATAATTTTGATTTTGACGACTACAAGCCCTTCTTCTTCCATGAGTCGTGTGAACATGCCATTGAGCGTAGCTGTGGTAATCTGGTTGACATCAATGTTGAGAACTTTGGCACTAATGAGCTCCTTAAATATTATATCGCTGAGAGGTATCTTAAACGATCTCCATTAAATGGTGTATTTTATGAGTGGATTATTATTAATAAGGTGGTGTCTTTCTGTGAATATCTTGAAGTGATTGGCCGTTCTTGCCCTCTTTTGAAATCTTTGAAATTGAACAAGCACCCCGGGGATATGTTCGACAGCAAAGACAATGATGATGCATTTGCGATAGCCAGAACAATGCATGGCTTAAAGAACCTCCAGCTTTTTGGAAATTGGATGAATCATCTGGCGTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

51.28

Weight (kDa)

5.39

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53450 AT1G53450 AT1G53450 AT3G14830 AT3G14830 AT3G14830 AT3G14830
fragaria_vesca	FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970
malus_domestica	MD03G1246300.v1.1 MD11G1267300.v1.1
prunus_persica	Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1
pyrus_communis	pycom03g19530 pycom11g23510
rosa_chinensis	RchiOBHm_Chr5g0030011
rosa_laevigata	RLG00000033209
rosa_multiflora	Rmu_sc0003368.1_g000012 Rmu_sc0004542.1_g000029
rosa_roxburghii	Rroxscaffold_1G00050010 Rroxscaffold_2G00118380 Rroxscaffold_2G00118390
rosa_rugosa	Rorug05G0116400
rosa_samantha	Rh5AG209400 Rh5BG208300 Rh5CG232100 Rh5DG212700
rosa_wichuraiana	Rw5G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	220
Acc16I	TGCGCA	2 cut(s)	59, 926
Acc36I	ACCTGC	1 cut(s)	654
AccB7I	CCANNNNNTGG	1 cut(s)	1097
AccBSI	CCGCTC	2 cut(s)	354, 857
AccII	CGCG	1 cut(s)	420
AciI	CCGC	6 cut(s)	109, 254, 352, 418, 420, 855
AcoI	YGGCCR	2 cut(s)	349, 1165
AcsI	RAATTY	1 cut(s)	749
AcuI	CTGAAG	2 cut(s)	786, 923
AcyI	GRCGYC	1 cut(s)	217
AfaI	GTAC	3 cut(s)	161, 492, 691
AfiI	CCNNNNNNNGG	3 cut(s)	123, 501, 1097
AflIII	ACRYGT	1 cut(s)	692
AgsI	TTSAA	8 cut(s)	370, 379, 385, 883, 1157, 1186, 1195, 1201
Alw21I	GWGCWC	2 cut(s)	131, 1050
Alw26I	GTCTC	2 cut(s)	224, 640
Ama87I	CYCGRG	2 cut(s)	202, 1211
AoxI	GGCC	3 cut(s)	349, 422, 1165
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	749
AseI	ATTAAT	1 cut(s)	1125
Asp700I	GAANNNNTTC	1 cut(s)	374
AspLEI	GCGC	6 cut(s)	7, 45, 60, 651, 912, 927
AspS9I	GGNCC	3 cut(s)	28, 422, 895
AsuC2I	CCSGG	2 cut(s)	1212, 1213
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	2 cut(s)	202, 1211
AvaII	GGWCC	2 cut(s)	28, 895
BanII	GRGCYC	2 cut(s)	131, 1050
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	131, 1050
BbvI	GCAGC	1 cut(s)	165
BccI	CCATC	2 cut(s)	59, 590
BceAI	ACGGC	3 cut(s)	101, 825, 1152
BcnI	CCSGG	2 cut(s)	1212, 1213
BcoDI	GTCTC	2 cut(s)	224, 640
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	2 cut(s)	336, 534
BfuAI	ACCTGC	1 cut(s)	654
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	4 cut(s)	109, 179, 352, 418
BlsI	GCNGC	4 cut(s)	110, 180, 353, 419
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	2 cut(s)	1212, 1213
Bme18I	GGWCC	2 cut(s)	28, 895
BmeT110I	CYCGRG	2 cut(s)	202, 1211
BmgT120I	GGNCC	3 cut(s)	28, 422, 895
BmiI	GGNNCC	4 cut(s)	30, 544, 871, 897
BmrFI	CCNGG	2 cut(s)	1212, 1213
BmsI	GCATC	5 cut(s)	241, 457, 508, 821, 1234
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	551, 1271
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	1212, 1213
BsaAI	YACGTR	1 cut(s)	458
BsaBI	GATNNNNATC	2 cut(s)	69, 842
BsaHI	GRCGYC	1 cut(s)	217
BsaJI	CCNNGG	4 cut(s)	418, 1210, 1211, 1212
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 118, 119, 148, 549, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 501, 1097
Bse8I	GATNNNNATC	2 cut(s)	69, 842
BseDI	CCNNGG	4 cut(s)	418, 1210, 1211, 1212
BseGI	GGATG	2 cut(s)	843, 1311
BseJI	GATNNNNATC	2 cut(s)	69, 842
BseLI	CCNNNNNNNGG	3 cut(s)	123, 501, 1097
BseMII	CTCAG	3 cut(s)	729, 872, 1059
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	351, 424, 1167
BsiHKAI	GWGCWC	2 cut(s)	131, 1050
BsiHKCI	CYCGRG	2 cut(s)	202, 1211
BsiSI	CCGG	1 cut(s)	1212
BslI	CCNNNNNNNGG	3 cut(s)	123, 501, 1097
BsmAI	GTCTC	2 cut(s)	224, 640
BsmBI	CGTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	609
BsnI	GGCC	3 cut(s)	351, 424, 1167
BsoBI	CYCGRG	2 cut(s)	202, 1211
Bsp1286I	GDGCHC	2 cut(s)	131, 1050
Bsp143I	GATC	4 cut(s)	70, 628, 761, 1085
BspACI	CCGC	6 cut(s)	109, 254, 352, 418, 420, 855
BspANI	GGCC	3 cut(s)	351, 424, 1167
BspCNI	CTCAG	3 cut(s)	730, 871, 1060
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	4 cut(s)	30, 544, 871, 897
BspMI	ACCTGC	1 cut(s)	654
BsrBI	CCGCTC	2 cut(s)	354, 857
BssECI	CCNNGG	4 cut(s)	418, 1210, 1211, 1212
BssMI	GATC	4 cut(s)	70, 628, 761, 1085
BssNI	GRCGYC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	228, 822
BstACI	GRCGYC	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	738, 858, 1068
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	843, 1311
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	6 cut(s)	7, 45, 60, 651, 912, 927
BstKTI	GATC	4 cut(s)	73, 631, 764, 1088
BstMAI	GTCTC	2 cut(s)	224, 640
BstMBI	GATC	4 cut(s)	70, 628, 761, 1085
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 66, 357, 606, 1173
BstNSI	RCATGY	4 cut(s)	58, 696, 925, 986
BstSCI	CCNGG	2 cut(s)	1210, 1211
BstSFI	CTRYAG	2 cut(s)	336, 534
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	165
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	761
BstXI	CCANNNNNNTGG	2 cut(s)	575, 1295
BstYI	RGATCY	1 cut(s)	761
BsuRI	GGCC	3 cut(s)	351, 424, 1167
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	843, 1311
BtsIMutI	CAGTG	3 cut(s)	192, 448, 735
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	1 cut(s)	422
CfoI	GCGC	6 cut(s)	7, 45, 60, 651, 912, 927
Cfr13I	GGNCC	3 cut(s)	28, 422, 895
Cfr42I	CCGCGG	1 cut(s)	421
Cfr9I	CCCGGG	1 cut(s)	1211
Csp6I	GTAC	3 cut(s)	160, 491, 690
CviQI	GTAC	3 cut(s)	160, 491, 690
DdeI	CTNAG	3 cut(s)	738, 858, 1068
DpnI	GATC	4 cut(s)	72, 630, 763, 1087
DpnII	GATC	4 cut(s)	70, 628, 761, 1085
DraI	TTTAAA	2 cut(s)	276, 781
EaeI	YGGCCR	2 cut(s)	349, 1165
Ecl136II	GAGCTC	2 cut(s)	129, 1048
Eco24I	GRGCYC	2 cut(s)	131, 1050
Eco47I	GGWCC	2 cut(s)	28, 895
Eco53kI	GAGCTC	2 cut(s)	129, 1048
Eco57I	CTGAAG	2 cut(s)	786, 923
Eco88I	CYCGRG	2 cut(s)	202, 1211
EcoICRI	GAGCTC	2 cut(s)	129, 1048
EcoO109I	RGGNCCY	2 cut(s)	28, 895
EcoT22I	ATGCAT	3 cut(s)	552, 1249, 1272
EcoT38I	GRGCYC	2 cut(s)	131, 1050
Esp3I	CGTCTC	1 cut(s)	224
FalI	AAGNNNNNCTT	2 cut(s)	944, 976
FauI	CCCGC	2 cut(s)	247, 413
Fnu4HI	GCNGC	4 cut(s)	109, 179, 352, 418
FokI	GGATG	2 cut(s)	830, 1318
FriOI	GRGCYC	2 cut(s)	131, 1050
Fsp4HI	GCNGC	4 cut(s)	109, 179, 352, 418
FspBI	CTAG	1 cut(s)	759
FspI	TGCGCA	2 cut(s)	59, 926
GlaI	GCGC	6 cut(s)	6, 44, 59, 650, 911, 926
GluI	GCNGC	4 cut(s)	109, 179, 352, 418
GsuI	CTGGAG	2 cut(s)	551, 1271
HaeIII	GGCC	3 cut(s)	351, 424, 1167
HapII	CCGG	1 cut(s)	1212
HhaI	GCGC	6 cut(s)	7, 45, 60, 651, 912, 927
Hin1I	GRCGYC	1 cut(s)	217
Hin6I	GCGC	6 cut(s)	5, 43, 58, 649, 910, 925
HinP1I	GCGC	6 cut(s)	5, 43, 58, 649, 910, 925
HincII	GTYRAC	2 cut(s)	588, 1015
HindII	GTYRAC	2 cut(s)	588, 1015
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	4 cut(s)	210, 731, 971, 1309
HpaII	CCGG	1 cut(s)	1212
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	4 cut(s)	557, 588, 980, 1015
Hpy188I	TCNGA	7 cut(s)	126, 215, 224, 250, 766, 861, 903
Hpy188III	TCNNGA	5 cut(s)	74, 464, 614, 626, 1154
Hpy8I	GTNNAC	4 cut(s)	557, 588, 980, 1015
HpyAV	CCTTC	2 cut(s)	856, 967
HpyCH4III	ACNGT	2 cut(s)	228, 822
HpyCH4IV	ACGT	2 cut(s)	217, 457
HpyCH4V	TGCA	7 cut(s)	16, 24, 521, 550, 891, 1247, 1270
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 66, 357, 606, 1173
HpyF3I	CTNAG	3 cut(s)	738, 858, 1068
HpySE526I	ACGT	2 cut(s)	217, 457
Hsp92I	GRCGYC	1 cut(s)	217
HspAI	GCGC	6 cut(s)	5, 43, 58, 649, 910, 925
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	70, 628, 761, 1085
LmnI	GCTCC	3 cut(s)	126, 875, 1053
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	5 cut(s)	241, 457, 508, 821, 1234
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	2 cut(s)	217, 457
MaeIII	GTNAC	2 cut(s)	166, 805
MalI	GATC	4 cut(s)	72, 630, 763, 1087
MbiI	CCGCTC	2 cut(s)	354, 857
MboI	GATC	4 cut(s)	70, 628, 761, 1085
MboII	GAAGA	3 cut(s)	89, 952, 955
MflI	RGATCY	1 cut(s)	761
MhlI	GDGCHC	2 cut(s)	131, 1050
MluCI	AATT	6 cut(s)	705, 713, 749, 931, 1196, 1300
MlyI	GAGTC	1 cut(s)	980
MmeI	TCCRAC	2 cut(s)	247, 270
Mph1103I	ATGCAT	3 cut(s)	552, 1249, 1272
MroXI	GAANNNNTTC	1 cut(s)	374
MslI	CAYNNNNRTG	3 cut(s)	441, 504, 920
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	1 cut(s)	1212
MspR9I	CCNGG	2 cut(s)	1212, 1213
Mva1269I	GAATGC	1 cut(s)	609
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	5 cut(s)	13, 66, 357, 606, 1173
NciI	CCSGG	2 cut(s)	1212, 1213
NdeII	GATC	4 cut(s)	70, 628, 761, 1085
NlaIV	GGNNCC	4 cut(s)	30, 544, 871, 897
NmuCI	GTSAC	1 cut(s)	166
NsbI	TGCGCA	2 cut(s)	59, 926
NsiI	ATGCAT	3 cut(s)	552, 1249, 1272
NspI	RCATGY	4 cut(s)	58, 696, 925, 986
PaeR7I	CTCGAG	1 cut(s)	202
PciI	ACATGT	1 cut(s)	692
PctI	GAATGC	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	3 cut(s)	210, 731, 1309
PflMI	CCANNNNNTGG	1 cut(s)	1097
PkrI	GCNGC	4 cut(s)	110, 180, 353, 419
PleI	GAGTC	1 cut(s)	979
PpsI	GAGTC	1 cut(s)	979
Ppu21I	YACGTR	1 cut(s)	458
PpuMI	RGGWCCY	2 cut(s)	28, 895
PscI	ACATGT	1 cut(s)	692
PshBI	ATTAAT	1 cut(s)	1125
Psp124BI	GAGCTC	2 cut(s)	131, 1050
Psp5II	RGGWCCY	2 cut(s)	28, 895
PspN4I	GGNNCC	4 cut(s)	30, 544, 871, 897
PspPI	GGNCC	3 cut(s)	28, 422, 895
PspPPI	RGGWCCY	2 cut(s)	28, 895
PspXI	VCTCGAGB	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	761
RsaI	GTAC	3 cut(s)	161, 492, 691
RsaNI	GTAC	3 cut(s)	160, 491, 690
RseI	CAYNNNNRTG	3 cut(s)	441, 504, 920
SacI	GAGCTC	2 cut(s)	131, 1050
SacII	CCGCGG	1 cut(s)	421
SatI	GCNGC	4 cut(s)	109, 179, 352, 418
Sau3AI	GATC	4 cut(s)	70, 628, 761, 1085
Sau96I	GGNCC	3 cut(s)	28, 422, 895
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	2 cut(s)	1212, 1213
SduI	GDGCHC	2 cut(s)	131, 1050
SfaNI	GCATC	5 cut(s)	241, 457, 508, 821, 1234
SfcI	CTRYAG	2 cut(s)	336, 534
Sfr274I	CTCGAG	1 cut(s)	202
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	28, 895
SlaI	CTCGAG	1 cut(s)	202
SmaI	CCCGGG	1 cut(s)	1213
SmiMI	CAYNNNNRTG	3 cut(s)	441, 504, 920
SmlI	CTYRAG	2 cut(s)	182, 202
SmoI	CTYRAG	2 cut(s)	182, 202
Sse9I	AATT	6 cut(s)	705, 713, 749, 931, 1196, 1300
SsiI	CCGC	6 cut(s)	109, 254, 352, 418, 420, 855
SspI	AATATT	1 cut(s)	1058
SspMI	CTAG	1 cut(s)	759
SstI	GAGCTC	2 cut(s)	131, 1050
StyD4I	CCNGG	2 cut(s)	1210, 1211
TaaI	ACNGT	2 cut(s)	228, 822
TaiI	ACGT	2 cut(s)	220, 460
TaqI	TCGA	4 cut(s)	75, 144, 203, 1224
TasI	AATT	6 cut(s)	705, 713, 749, 931, 1196, 1300
TatI	WGTACW	2 cut(s)	159, 689
TauI	GCSGC	3 cut(s)	111, 354, 420
TfiI	GAWTC	3 cut(s)	210, 731, 1309
TscAI	CASTG	3 cut(s)	199, 448, 742
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	178
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	5 cut(s)	345, 425, 488, 649, 1322
TspMI	CCCGGG	1 cut(s)	1211
TspRI	CASTG	3 cut(s)	199, 448, 742
Van91I	CCANNNNNTGG	1 cut(s)	1097
VpaK11BI	GGWCC	2 cut(s)	28, 895
VspI	ATTAAT	1 cut(s)	1125
XapI	RAATTY	1 cut(s)	749
XceI	RCATGY	4 cut(s)	58, 696, 925, 986
XhoI	CTCGAG	1 cut(s)	202
XmaI	CCCGGG	1 cut(s)	1211
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	759
ZraI	GACGTC	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	161
Zsp2I	ATGCAT	3 cut(s)	552, 1249, 1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.