Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004081

Physical Location & Seq

Genomic Coordinates Reverse (-)

11428976 .. 11434467

Gene Structure 5492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCGGTGGAGAGGTCCTTCGAGGCCTGGGAGGAGGTGCAGCGCCACGGCCAGGACTTGGCCGATCGGCTCGCGCAGGGCTTCACCGGCCTGATTCAGACCCACATCAATACGCCGTCGTTTCCCTGGCCGAGTTCGCAGAACCCGAAGCTGTTCGACCTCGAGTTCCCGACCCAGAGCTTCGGGAAGCGGCGGGACTTCGTCGGCGTGGCGGCGGCGCGGAGCAGCGGGAACGGGATCAATGGGGTTTCGGCGATTTTGGATATAGGGAATAGGATTGGGCAGGCCGGGGCGGAGTTCGGGGCGGGGTTGGATGGGATGGTGCAGCAGTTCTTTAGGAGCTTGCCGGTGCCGTTTCGGCATGAGGAGAGCGGCGTTGTGGCGGTGAGGGTTGATAAGGAGAAGGTGAAGAATATGAGGGTGAGTGGGAAGGAGGAGCTGGGGGTTTCGGTGAGGGATAATAGGGGTGTGGAGAGTGATAGTGGGGCTGATGGCTTTGTGGATGAGGAGCTTGCTGGCTTGAATTTAAGGTCTGCTGGGCTTTTGGGTAGACCACAGGGCATCTTAAATACTTCAACAACTTACGATAGTAGAACACATGAGCTAGAAAGCTCTTTGGTTGCAAGGGGAGATTTGTGGAGAGTAGAGGCTTCTCAAGGCAGTTCAACGTCTAGAAATGGCAATTCATCGCTCTTTCTTGTTCAGCTTGGACCGGTACTTTTTGTTCGTGATGCAACTCTTCTTTTGCCGGTGCATTTGTCAAAGCAACACTTGCTTTGGTATGGCTATGACAGGAAGAATGGGCTGCATTCTCTCTGTCCGGCAGTGTGGTCAAAACACAGAAGGTGGCTCTTAATGTCAATGCTCTGTCTGAACCCCTTAGCCTGTTCATTTGTTGATTTACAGTTTCCAAATGGGCAATTTACATATGTATCTGGTGAAGGGCTTACTACAAGTGCTTTCTTACCTCTTTGTGGAGGTCTTCTACAAGCTCAAGGTCAATATCCTGGAGAAATGAGATTCAGTTACTCTCGCAAGGTTAGACTGCAAACTAGCCGAAAGATGTTGACAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

39.47

Weight (kDa)

8.88

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53450 AT1G53450 AT1G53450 AT3G14830 AT3G14830 AT3G14830 AT3G14830
fragaria_vesca	FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970
malus_domestica	MD03G1246300.v1.1 MD11G1267300.v1.1
prunus_persica	Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1
pyrus_communis	pycom03g19530 pycom11g23510
rosa_chinensis	RchiOBHm_Chr5g0030011
rosa_laevigata	RLG00000033209
rosa_multiflora	Rmu_sc0003368.1_g000012 Rmu_sc0004542.1_g000029
rosa_roxburghii	Rroxscaffold_1G00050010 Rroxscaffold_2G00118380 Rroxscaffold_2G00118390
rosa_rugosa	Rorug05G0116400
rosa_samantha	Rh5AG209400 Rh5BG208300 Rh5CG232100 Rh5DG212700
rosa_wichuraiana	Rw5G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccBSI	CCGCTC	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	2 cut(s)	74, 220
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	3 cut(s)	49, 60, 128
AcsI	RAATTY	1 cut(s)	523
AfaI	GTAC	1 cut(s)	717
AfiI	CCNNNNNNNGG	3 cut(s)	52, 58, 974
AgeI	ACCGGT	1 cut(s)	712
AgsI	TTSAA	3 cut(s)	523, 576, 666
AjnI	CCWGG	4 cut(s)	26, 51, 125, 1006
AluBI	AGCT	9 cut(s)	151, 180, 342, 439, 511, 604, 612, 706, 992
AluI	AGCT	9 cut(s)	151, 180, 342, 439, 511, 604, 612, 706, 992
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	6 cut(s)	24, 49, 60, 88, 128, 285
ApeKI	GCWGC	4 cut(s)	40, 225, 325, 805
ApoI	RAATTY	1 cut(s)	523
AsiGI	ACCGGT	1 cut(s)	712
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	3 cut(s)	45, 76, 220
AspS9I	GGNCC	2 cut(s)	15, 710
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	6 cut(s)	76, 397, 418, 433, 463, 950
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	15, 710
BaeI	ACNNNNGTAYC	2 cut(s)	915, 948
BanI	GGYRCC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	974
BbvI	GCAGC	4 cut(s)	52, 237, 337, 792
BccI	CCATC	3 cut(s)	308, 313, 485
BceAI	ACGGC	3 cut(s)	64, 100, 337
BciT130I	CCWGG	4 cut(s)	28, 53, 127, 1008
BcnI	CCSGG	1 cut(s)	289
BfaI	CTAG	3 cut(s)	605, 672, 1053
BfoI	RGCGCY	1 cut(s)	46
BglI	GCCNNNNNGGC	1 cut(s)	358
BisI	GCNGC	8 cut(s)	41, 191, 213, 216, 226, 326, 373, 806
BlsI	GCNGC	8 cut(s)	42, 192, 214, 217, 227, 327, 374, 807
Bme1390I	CCNGG	5 cut(s)	28, 53, 127, 289, 1008
Bme18I	GGWCC	2 cut(s)	15, 710
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	15, 710
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	5 cut(s)	28, 53, 127, 289, 1008
BmsI	GCATC	2 cut(s)	570, 721
BpiI	GAAGAC	1 cut(s)	974
BpmI	CTGGAG	1 cut(s)	1029
Bpu10I	CCTNAGC	1 cut(s)	880
BpuEI	CTTGAG	2 cut(s)	639, 978
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	27, 46, 125, 288
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 58, 974
Bse118I	RCCGGY	4 cut(s)	86, 346, 712, 748
BseBI	CCWGG	4 cut(s)	28, 53, 127, 1008
BseDI	CCNNGG	4 cut(s)	27, 46, 125, 288
BseGI	GGATG	3 cut(s)	319, 324, 508
BseLI	CCNNNNNNNGG	3 cut(s)	52, 58, 974
BseRI	GAGGAG	4 cut(s)	47, 380, 449, 521
BseXI	GCAGC	4 cut(s)	52, 237, 337, 792
BseYI	CCCAGC	2 cut(s)	439, 536
BsgI	GTGCAG	2 cut(s)	59, 344
Bsh1236I	CGCG	2 cut(s)	74, 220
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	6 cut(s)	26, 51, 62, 90, 130, 287
BshNI	GGYRCC	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	6 cut(s)	87, 288, 347, 713, 749, 821
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	52, 58, 974
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	6 cut(s)	26, 51, 62, 90, 130, 287
BsoBI	CYCGRG	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	64, 237
BspANI	GGCC	6 cut(s)	26, 51, 62, 90, 130, 287
BspFNI	CGCG	2 cut(s)	74, 220
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	349
BsrBI	CCGCTC	1 cut(s)	372
BsrFI	RCCGGY	4 cut(s)	86, 346, 712, 748
BssAI	RCCGGY	4 cut(s)	86, 346, 712, 748
BssECI	CCNNGG	4 cut(s)	27, 46, 125, 288
BssMI	GATC	2 cut(s)	64, 237
Bst2UI	CCWGG	4 cut(s)	28, 53, 127, 1008
Bst4CI	ACNGT	1 cut(s)	906
Bst6I	CTCTTC	1 cut(s)	744
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	5 cut(s)	72, 285, 344, 513, 517
BstDEI	CTNAG	1 cut(s)	880
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	319, 324, 508
BstFNI	CGCG	2 cut(s)	74, 220
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	3 cut(s)	45, 76, 220
BstKTI	GATC	2 cut(s)	67, 240
BstMBI	GATC	2 cut(s)	64, 237
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 136, 358, 772
BstNI	CCWGG	4 cut(s)	28, 53, 127, 1008
BstSCI	CCNGG	5 cut(s)	26, 51, 125, 287, 1006
BstUI	CGCG	2 cut(s)	74, 220
BstV1I	GCAGC	4 cut(s)	52, 237, 337, 792
BstV2I	GAAGAC	1 cut(s)	974
BsuRI	GGCC	6 cut(s)	26, 51, 62, 90, 130, 287
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	3 cut(s)	319, 324, 508
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	1 cut(s)	831
Cac8I	GCNNGC	5 cut(s)	72, 285, 344, 513, 517
CfoI	GCGC	3 cut(s)	45, 76, 220
Cfr10I	RCCGGY	4 cut(s)	86, 346, 712, 748
Cfr13I	GGNCC	2 cut(s)	15, 710
Csp6I	GTAC	1 cut(s)	716
CspAI	ACCGGT	1 cut(s)	712
CviAII	CATG	2 cut(s)	362, 599
CviQI	GTAC	1 cut(s)	716
DdeI	CTNAG	1 cut(s)	880
DpnI	GATC	2 cut(s)	66, 239
DpnII	GATC	2 cut(s)	64, 237
EaeI	YGGCCR	3 cut(s)	49, 60, 128
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
EciI	GGCGGA	1 cut(s)	308
Eco147I	AGGCCT	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	15, 710
Eco88I	CYCGRG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	15
EcoRII	CCWGG	4 cut(s)	26, 51, 125, 1006
FaeI	CATG	2 cut(s)	365, 602
FaiI	YATR	8 cut(s)	266, 363, 416, 600, 783, 789, 928, 930
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	361, 598
FauI	CCCGC	3 cut(s)	186, 221, 298
FauNDI	CATATG	1 cut(s)	928
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	8 cut(s)	41, 191, 213, 216, 226, 326, 373, 806
FokI	GGATG	3 cut(s)	326, 331, 515
Fsp4HI	GCNGC	8 cut(s)	41, 191, 213, 216, 226, 326, 373, 806
FspBI	CTAG	3 cut(s)	605, 672, 1053
GlaI	GCGC	3 cut(s)	44, 75, 219
GluI	GCNGC	8 cut(s)	41, 191, 213, 216, 226, 326, 373, 806
GsaI	CCCAGC	2 cut(s)	443, 540
GsuI	CTGGAG	1 cut(s)	1029
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	6 cut(s)	26, 51, 62, 90, 130, 287
HapII	CCGG	6 cut(s)	87, 288, 347, 713, 749, 821
HhaI	GCGC	3 cut(s)	45, 76, 220
Hin1II	CATG	2 cut(s)	365, 602
Hin6I	GCGC	3 cut(s)	43, 74, 218
HinP1I	GCGC	3 cut(s)	43, 74, 218
HincII	GTYRAC	1 cut(s)	1068
HindII	GTYRAC	1 cut(s)	1068
HinfI	GANTC	2 cut(s)	94, 1020
HpaII	CCGG	6 cut(s)	87, 288, 347, 713, 749, 821
HphI	GGTGA	6 cut(s)	76, 397, 418, 433, 463, 950
Hpy166II	GTNNAC	2 cut(s)	551, 1068
Hpy188I	TCNGA	2 cut(s)	99, 873
Hpy188III	TCNNGA	4 cut(s)	169, 184, 672, 728
Hpy8I	GTNNAC	2 cut(s)	551, 1068
Hpy99I	CGWCG	2 cut(s)	121, 206
HpyAV	CCTTC	5 cut(s)	28, 397, 424, 837, 935
HpyCH4III	ACNGT	1 cut(s)	906
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	7 cut(s)	40, 325, 623, 734, 754, 808, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 136, 358, 772
HpyF3I	CTNAG	1 cut(s)	880
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	2 cut(s)	365, 602
HspAI	GCGC	3 cut(s)	43, 74, 218
Kzo9I	GATC	2 cut(s)	64, 237
LmnI	GCTCC	4 cut(s)	222, 339, 436, 508
Lsp1109I	GCAGC	4 cut(s)	52, 237, 337, 792
LweI	GCATC	2 cut(s)	570, 721
MaeI	CTAG	3 cut(s)	605, 672, 1053
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	1 cut(s)	1025
MalI	GATC	2 cut(s)	66, 239
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	2 cut(s)	64, 237
MboII	GAAGA	4 cut(s)	421, 731, 808, 974
MluCI	AATT	3 cut(s)	523, 682, 920
MmeI	TCCRAC	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	3 cut(s)	527, 566, 854
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	6 cut(s)	87, 288, 347, 713, 749, 821
MspR9I	CCNGG	5 cut(s)	28, 53, 127, 289, 1008
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	4 cut(s)	28, 53, 127, 1008
MvnI	CGCG	2 cut(s)	74, 220
MwoI	GCNNNNNNNGC	4 cut(s)	87, 136, 358, 772
NciI	CCSGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	928
NdeII	GATC	2 cut(s)	64, 237
NlaIII	CATG	2 cut(s)	365, 602
NlaIV	GGNNCC	1 cut(s)	351
NmeAIII	GCCGAG	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	161
PceI	AGGCCT	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PctI	GAATGC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	94, 1020
PflFI	GACNNNGTC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	1006
PinAI	ACCGGT	1 cut(s)	712
PkrI	GCNGC	8 cut(s)	42, 192, 214, 217, 227, 327, 374, 807
Ple19I	CGATCG	1 cut(s)	67
PpuMI	RGGWCCY	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	15
Psp6I	CCWGG	4 cut(s)	26, 51, 125, 1006
PspFI	CCCAGC	2 cut(s)	439, 536
PspGI	CCWGG	4 cut(s)	26, 51, 125, 1006
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	15, 710
PspPPI	RGGWCCY	1 cut(s)	15
PspXI	VCTCGAGB	1 cut(s)	161
PsrI	GAACNNNNNNTAC	2 cut(s)	708, 740
PsyI	GACNNNGTC	1 cut(s)	200
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	717
RsaNI	GTAC	1 cut(s)	716
SaqAI	TTAA	3 cut(s)	527, 566, 854
SatI	GCNGC	8 cut(s)	41, 191, 213, 216, 226, 326, 373, 806
Sau3AI	GATC	2 cut(s)	64, 237
Sau96I	GGNCC	2 cut(s)	15, 710
ScrFI	CCNGG	5 cut(s)	28, 53, 127, 289, 1008
SfaNI	GCATC	2 cut(s)	570, 721
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	2 cut(s)	15, 710
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	3 cut(s)	161, 654, 993
SmoI	CTYRAG	3 cut(s)	161, 654, 993
Sse9I	AATT	3 cut(s)	523, 682, 920
SseBI	AGGCCT	1 cut(s)	26
SspMI	CTAG	3 cut(s)	605, 672, 1053
StuI	AGGCCT	1 cut(s)	26
StyD4I	CCNGG	5 cut(s)	26, 51, 125, 287, 1006
TaaI	ACNGT	1 cut(s)	906
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	3 cut(s)	21, 156, 162
TasI	AATT	3 cut(s)	523, 682, 920
TauI	GCSGC	4 cut(s)	193, 215, 218, 375
TfiI	GAWTC	2 cut(s)	94, 1020
Tru1I	TTAA	3 cut(s)	527, 566, 854
Tru9I	TTAA	3 cut(s)	527, 566, 854
TscAI	CASTG	1 cut(s)	831
TseI	GCWGC	4 cut(s)	40, 225, 325, 805
TspDTI	ATGAA	2 cut(s)	675, 879
TspRI	CASTG	1 cut(s)	831
Tth111I	GACNNNGTC	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	15, 710
XapI	RAATTY	1 cut(s)	523
XbaI	TCTAGA	1 cut(s)	671
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	3 cut(s)	605, 672, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.