Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004081

Physical Location & Seq

Genomic Coordinates Reverse (-)

49845556 .. 49846218

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00118380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCGGTGGAGAAATTCTTCGAAGCTTGGGAGGAGGTGCAGCGTCACGGCCGGGACCTAGCGGATCGTCCGGTGCAAGGTTTCACCGGTCGATTCAGACCCACCTCAATACGCCGTCGTTTCCGTGGCCGAGCTCTCACAATTCGAACAGGATTGGGCAATCCGGGGCCGTTGATTCGGGTTGAGTCGGATGTGGTTAATATGAGAGCTGATGTGGGTGTGAGTGGTAAGGAGGATTTAGGGCCGTTGGTGAGGGATTCTAGGGATGCGGAGAGTAGAGGCTTCTCAAGGCGCTCAACATCTAGAAATAGCAATTCGTCACTCTTTCTTGTTCGGCTTGGACCGGTCCTCCTTGTTCATGATGCGACTCTTCTTTTGCCAGTGCATTTGTCAAAGCAACACTTGCTTTGGTATGGCTATGACAGAAGGCTGGCTTGCACATATTTCAAGAGCATCACTAAAGGGAAACGCGTTCGGTCAAATATGGGGACATACGAACAGATTGGAAAAAGACTCACCGCTTTAGCTGATTTGGGTGAGAGGTCAAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.93

Weight (kDa)

10.94

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53450 AT1G53450 AT1G53450 AT3G14830 AT3G14830 AT3G14830 AT3G14830
fragaria_vesca	FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970 FvH4_3g17970
malus_domestica	MD03G1246300.v1.1 MD11G1267300.v1.1
prunus_persica	Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1 Prupe.4G158300_v2.0.a1
pyrus_communis	pycom03g19530 pycom11g23510
rosa_chinensis	RchiOBHm_Chr5g0030011
rosa_laevigata	RLG00000033209
rosa_multiflora	Rmu_sc0003368.1_g000012 Rmu_sc0004542.1_g000029
rosa_roxburghii	Rroxscaffold_1G00050010 Rroxscaffold_2G00118380 Rroxscaffold_2G00118390
rosa_rugosa	Rorug05G0116400
rosa_samantha	Rh5AG209400 Rh5BG208300 Rh5CG232100 Rh5DG212700
rosa_wichuraiana	Rw5G019070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	471
AciI	CCGC	3 cut(s)	62, 269, 519
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	2 cut(s)	49, 127
AcsI	RAATTY	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	469
AgeI	ACCGGT	2 cut(s)	86, 343
AgsI	TTSAA	1 cut(s)	448
AluBI	AGCT	4 cut(s)	26, 134, 209, 527
AluI	AGCT	4 cut(s)	26, 134, 209, 527
Alw21I	GWGCWC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	4 cut(s)	49, 127, 167, 242
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	358, 390
AsiGI	ACCGGT	2 cut(s)	86, 343
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	5 cut(s)	55, 167, 242, 341, 346
AsuC2I	CCSGG	2 cut(s)	53, 165
AsuHPI	GGTGA	4 cut(s)	76, 262, 508, 548
AsuII	TTCGAA	2 cut(s)	21, 145
AvaII	GGWCC	3 cut(s)	55, 341, 346
BanII	GRGCYC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	52
BceAI	ACGGC	4 cut(s)	64, 99, 154, 229
BcnI	CCSGG	2 cut(s)	53, 165
BfaI	CTAG	3 cut(s)	59, 261, 303
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	53, 165
Bme18I	GGWCC	3 cut(s)	55, 341, 346
BmgT120I	GGNCC	5 cut(s)	55, 167, 242, 341, 346
BmiI	GGNNCC	2 cut(s)	56, 168
BmrFI	CCNGG	2 cut(s)	53, 165
BmsI	GCATC	3 cut(s)	256, 352, 462
Bpu14I	TTCGAA	2 cut(s)	21, 145
BpuEI	CTTGAG	1 cut(s)	271
BpuMI	CCSGG	2 cut(s)	53, 165
BsaJI	CCNNGG	2 cut(s)	124, 164
BsaWI	WCCGGW	3 cut(s)	70, 86, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	2 cut(s)	86, 343
Bse1I	ACTGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	124, 164
BseGI	GGATG	2 cut(s)	196, 271
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	47
BseX3I	CGGCCG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	471
Bsh1285I	CGRYCG	2 cut(s)	52, 91
BshFI	GGCC	4 cut(s)	51, 129, 169, 244
BshTI	ACCGGT	2 cut(s)	86, 343
BsiEI	CGRYCG	2 cut(s)	52, 91
BsiHKAI	GWGCWC	1 cut(s)	136
BsiSI	CCGG	5 cut(s)	52, 71, 87, 164, 344
BslFI	GGGAC	2 cut(s)	68, 502
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	68, 502
BsnI	GGCC	4 cut(s)	51, 129, 169, 244
Bsp119I	TTCGAA	2 cut(s)	21, 145
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	3 cut(s)	62, 269, 519
BspANI	GGCC	4 cut(s)	51, 129, 169, 244
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	56, 168
BspPI	GGATC	1 cut(s)	72
BspT104I	TTCGAA	2 cut(s)	21, 145
BsrFI	RCCGGY	2 cut(s)	86, 343
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	2 cut(s)	86, 343
BssECI	CCNNGG	2 cut(s)	124, 164
BssMI	GATC	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	403
BstBI	TTCGAA	2 cut(s)	21, 145
BstC8I	GCNNGC	2 cut(s)	432, 436
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	196, 271
BstFNI	CGCG	1 cut(s)	471
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMCI	CGRYCG	2 cut(s)	52, 91
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstSCI	CCNGG	2 cut(s)	51, 163
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	52
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	4 cut(s)	51, 129, 169, 244
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	196, 271
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	432, 436
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	1 cut(s)	294
Cfr10I	RCCGGY	2 cut(s)	86, 343
Cfr13I	GGNCC	5 cut(s)	55, 167, 242, 341, 346
CseI	GACGC	1 cut(s)	32
CspAI	ACCGGT	2 cut(s)	86, 343
CviAII	CATG	1 cut(s)	359
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	2 cut(s)	49, 127
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	134
EclXI	CGGCCG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	136
Eco47I	GGWCC	3 cut(s)	55, 341, 346
Eco52I	CGGCCG	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	136
FaeI	CATG	1 cut(s)	362
FaiI	YATR	7 cut(s)	203, 360, 414, 420, 442, 485, 493
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 418, 450
FaqI	GGGAC	2 cut(s)	68, 502
FatI	CATG	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	2 cut(s)	203, 278
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	3 cut(s)	59, 261, 303
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	4 cut(s)	51, 129, 169, 244
HapII	CCGG	5 cut(s)	52, 71, 87, 164, 344
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	362
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	6 cut(s)	93, 175, 185, 257, 367, 513
HpaII	CCGG	5 cut(s)	52, 71, 87, 164, 344
HphI	GGTGA	4 cut(s)	76, 262, 508, 548
Hpy188I	TCNGA	2 cut(s)	98, 190
Hpy188III	TCNNGA	4 cut(s)	303, 359, 448, 546
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	40, 76, 385, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
Hsp92II	CATG	1 cut(s)	362
HspAI	GCGC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	8 cut(s)	65, 84, 100, 135, 177, 357, 393, 416
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	3 cut(s)	256, 352, 462
MaeI	CTAG	3 cut(s)	59, 261, 303
MaeIII	GTNAC	2 cut(s)	44, 318
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	10, 362
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	3 cut(s)	14, 141, 313
MluI	ACGCGT	1 cut(s)	469
MlyI	GAGTC	3 cut(s)	194, 361, 507
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	8 cut(s)	25, 28, 115, 226, 246, 272, 359, 534
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	198
MspI	CCGG	5 cut(s)	52, 71, 87, 164, 344
MspR9I	CCNGG	2 cut(s)	53, 165
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	403
NciI	CCSGG	2 cut(s)	53, 165
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	2 cut(s)	56, 168
NmeAIII	GCCGAG	1 cut(s)	155
NmuCI	GTSAC	2 cut(s)	44, 318
NspV	TTCGAA	2 cut(s)	21, 145
PagI	TCATGA	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	93, 175, 257
PinAI	ACCGGT	2 cut(s)	86, 343
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	3 cut(s)	193, 361, 507
PpsI	GAGTC	3 cut(s)	193, 361, 507
PpuMI	RGGWCCY	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	56, 168
PspPI	GGNCC	5 cut(s)	55, 167, 242, 341, 346
PspPPI	RGGWCCY	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	5 cut(s)	55, 167, 242, 341, 346
SchI	GAGTC	3 cut(s)	194, 361, 507
ScrFI	CCNGG	2 cut(s)	53, 165
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	9 cut(s)	28, 39, 60, 82, 107, 136, 211, 529, 545
SfaNI	GCATC	3 cut(s)	256, 352, 462
SfuI	TTCGAA	2 cut(s)	21, 145
SinI	GGWCC	3 cut(s)	55, 341, 346
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	3 cut(s)	14, 141, 313
SsiI	CCGC	3 cut(s)	62, 269, 519
SspMI	CTAG	3 cut(s)	59, 261, 303
SstI	GAGCTC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	51, 163
TaqI	TCGA	3 cut(s)	21, 91, 145
TaqII	GACCGA	1 cut(s)	465
TasI	AATT	3 cut(s)	14, 141, 313
TfiI	GAWTC	3 cut(s)	93, 175, 257
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	387
TseFI	GTSAC	2 cut(s)	44, 318
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	2 cut(s)	44, 318
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	55, 341, 346
XapI	RAATTY	1 cut(s)	14
XbaI	TCTAGA	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	3 cut(s)	59, 261, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.