Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Reverse (-)

19976386 .. 19978048

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGATGGGATTCTTGCAGCTGTTCCATCTGCAGTGTGTGTCTCTCTACGCATTTCTTGTCGGAATCTGGATAATGCTGAATCCATCTATCATTTTCCCGGCAAATCCTTGAATCGAGTTTCAGTGCTTCAAACTGGGAACTACGTCTCTCGTAAAGGCAATTCGTTGCTTAAAAACCGACATTGTGGTGAAATTTCCCGTGTGATCGTAAAATCCGCCGCTTCTTCAGTTGGAAATGCAGAGGACTACGCTGAAGAAACGGCTACAAGTGTAAAGTTTAAGAGATCAGTGACATTACCGGGTTGTTCTAGCCCGTTGTCTTTGCTCGGCACTGGGTTTAGGGAGAAAAAGTTTGCTATCATCGGTGTCAAAGTCTATGCTGCGGGTTATTATGTGAATGAATCTATCTTGAGCGGGTTAAGCGCTTGGACAGGGCGATCTGCTGATGAGATCCAAAGAGATTCATCACTGTTTGTTTCCATTTTCCAAGCTCAAGCAGAGAAATCGTTGCAGATTGTTCTTGTGAGAGATGTTGATGGTAAAACCTTCTGGGATGCATTGGATGAAGCCATTTCACCGAGAATCAAATCTCCATCTTCTGAGGATACAACTGCTCTCTCTACATTCCGTGGGATTTTCCAAAACAGACCTCTCAACAAAGGAAGTGTCATACTCTTGACTTGGATCAACACTTCTAATATGCTTGTTTCTGTTTCGTCGGGAGGATTACCAACGAATGTGGATGCAACGATCGAGTCAGGTAATGTTACATCTGCTCTGTTTGATGTGTTCTTTGGGGATTCTCCAGTTTCTCCTACATTGAAATCCTCAGTGGCTAACCAATTAGCCATGACCCTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

287

Amino Acids

30.73

Weight (kDa)

8.63

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_3	PF16036	89 - 276	1.5e-11	Chalcone isomerase-like
Chalcone	PF02431	90 - 283	5.7e-23	Chalcone-flavanone isomerase
Chalcone_2	PF16035	106 - 279	4.2e-12	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	414
AciI	CCGC	4 cut(s)	216, 219, 383, 414
AclWI	GGATC	2 cut(s)	445, 692
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	2 cut(s)	210, 273
AfeI	AGCGCT	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	112, 131, 823
AluBI	AGCT	2 cut(s)	20, 491
AluI	AGCT	2 cut(s)	20, 491
Alw26I	GTCTC	2 cut(s)	46, 151
AlwI	GGATC	2 cut(s)	445, 692
Aor51HI	AGCGCT	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	17, 380
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AspLEI	GCGC	1 cut(s)	425
AsuC2I	CCSGG	2 cut(s)	99, 300
AsuHPI	GGTGA	2 cut(s)	200, 567
BbvI	GCAGC	2 cut(s)	29, 367
BccI	CCATC	4 cut(s)	34, 92, 530, 601
BceAI	ACGGC	1 cut(s)	276
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BciVI	GTATCC	1 cut(s)	598
BcnI	CCSGG	2 cut(s)	99, 300
BcoDI	GTCTC	2 cut(s)	46, 151
BfaI	CTAG	2 cut(s)	309, 857
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	3 cut(s)	18, 219, 381
BlsI	GCNGC	3 cut(s)	19, 220, 382
Bme1390I	CCNGG	2 cut(s)	99, 300
BmrFI	CCNGG	2 cut(s)	99, 300
BmrI	ACTGGG	2 cut(s)	144, 342
BmsI	GCATC	2 cut(s)	544, 733
BmuI	ACTGGG	2 cut(s)	144, 342
BpmI	CTGGAG	1 cut(s)	789
BpuEI	CTTGAG	2 cut(s)	430, 477
BpuMI	CCSGG	2 cut(s)	99, 300
BsaJI	CCNNGG	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bse1I	ACTGG	3 cut(s)	139, 337, 806
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	4 cut(s)	10, 559, 568, 748
BseMII	CTCAG	2 cut(s)	591, 843
BseNI	ACTGG	3 cut(s)	139, 337, 806
BseXI	GCAGC	2 cut(s)	29, 367
Bsh1285I	CGRYCG	1 cut(s)	753
BsiEI	CGRYCG	1 cut(s)	753
BsiSI	CCGG	2 cut(s)	99, 299
BsmAI	GTCTC	2 cut(s)	46, 151
BsmBI	CGTCTC	1 cut(s)	151
Bsp143I	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
BspACI	CCGC	4 cut(s)	216, 219, 383, 414
BspCNI	CTCAG	2 cut(s)	592, 842
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	445, 692
BsrBI	CCGCTC	1 cut(s)	414
BsrI	ACTGG	3 cut(s)	139, 337, 806
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
Bst4CI	ACNGT	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	600, 829
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	4 cut(s)	10, 559, 568, 748
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	6 cut(s)	207, 287, 440, 453, 687, 753
BstMAI	GTCTC	2 cut(s)	46, 151
BstMBI	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	97, 298
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	29, 367
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
BsuI	GTATCC	1 cut(s)	598
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	4 cut(s)	10, 559, 568, 748
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	6 cut(s)	39, 129, 294, 330, 467, 837
CfoI	GCGC	1 cut(s)	425
CspCI	CAANNNNNGTGG	2 cut(s)	720, 755
CviAII	CATG	1 cut(s)	850
CviJI	RGCY	7 cut(s)	20, 263, 312, 491, 569, 836, 848
CviKI_1	RGCY	7 cut(s)	20, 263, 312, 491, 569, 836, 848
DdeI	CTNAG	2 cut(s)	600, 829
DpnI	GATC	6 cut(s)	206, 286, 439, 452, 686, 752
DpnII	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
EciI	GGCGGA	1 cut(s)	205
Eco47III	AGCGCT	1 cut(s)	424
Eco57I	CTGAAG	2 cut(s)	210, 273
EcoT22I	ATGCAT	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	151
FaeI	CATG	1 cut(s)	853
FaiI	YATR	5 cut(s)	378, 393, 671, 701, 851
FatI	CATG	1 cut(s)	849
FauI	CCCGC	2 cut(s)	376, 407
Fnu4HI	GCNGC	3 cut(s)	18, 219, 381
FokI	GGATG	4 cut(s)	17, 566, 575, 755
Fsp4HI	GCNGC	3 cut(s)	18, 219, 381
FspBI	CTAG	2 cut(s)	309, 857
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	3 cut(s)	18, 219, 381
GsuI	CTGGAG	1 cut(s)	789
HaeII	RGCGCY	1 cut(s)	426
HapII	CCGG	2 cut(s)	99, 299
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	853
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	9 cut(s)	10, 64, 80, 112, 401, 461, 582, 755, 800
HpaII	CCGG	2 cut(s)	99, 299
HphI	GGTGA	2 cut(s)	200, 567
Hpy188I	TCNGA	2 cut(s)	63, 601
Hpy188III	TCNNGA	4 cut(s)	68, 409, 676, 720
Hpy99I	CGWCG	1 cut(s)	721
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	6 cut(s)	17, 32, 239, 511, 557, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	2 cut(s)	600, 829
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	853
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
LpnPI	CCDG	9 cut(s)	53, 112, 120, 312, 318, 417, 535, 744, 819
Lsp1109I	GCAGC	2 cut(s)	29, 367
LweI	GCATC	2 cut(s)	544, 733
MaeI	CTAG	2 cut(s)	309, 857
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	289, 766
MalI	GATC	6 cut(s)	206, 286, 439, 452, 686, 752
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
MboII	GAAGA	3 cut(s)	216, 266, 588
MflI	RGATCY	1 cut(s)	450
MluCI	AATT	3 cut(s)	160, 192, 842
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	2 cut(s)	41, 211
MnlI	CCTC	5 cut(s)	235, 595, 660, 716, 838
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	3 cut(s)	171, 279, 419
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	99, 299
MspR9I	CCNGG	2 cut(s)	99, 300
MwoI	GCNNNNNNNGC	1 cut(s)	420
NciI	CCSGG	2 cut(s)	99, 300
NdeII	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
NlaIII	CATG	1 cut(s)	853
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	559
PfeI	GAWTC	8 cut(s)	10, 64, 80, 112, 401, 461, 582, 800
PkrI	GCNGC	3 cut(s)	19, 220, 382
Ple19I	CGATCG	1 cut(s)	753
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	450
PvuI	CGATCG	1 cut(s)	753
PvuII	CAGCTG	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	171, 279, 419
SatI	GCNGC	3 cut(s)	18, 219, 381
Sau3AI	GATC	6 cut(s)	204, 284, 437, 450, 684, 750
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	99, 300
SetI	ASST	6 cut(s)	22, 147, 493, 548, 652, 763
SfaNI	GCATC	2 cut(s)	544, 733
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	2 cut(s)	409, 492
SmoI	CTYRAG	2 cut(s)	409, 492
Sse9I	AATT	3 cut(s)	160, 192, 842
SsiI	CCGC	4 cut(s)	216, 219, 383, 414
SspMI	CTAG	2 cut(s)	309, 857
StyD4I	CCNGG	2 cut(s)	97, 298
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	115, 753
TasI	AATT	3 cut(s)	160, 192, 842
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	8 cut(s)	10, 64, 80, 112, 401, 461, 582, 800
Tru1I	TTAA	3 cut(s)	171, 279, 419
Tru9I	TTAA	3 cut(s)	171, 279, 419
TscAI	CASTG	6 cut(s)	39, 129, 294, 337, 474, 837
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	17, 380
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	414, 453, 579
TspGWI	ACGGA	1 cut(s)	617
TspRI	CASTG	6 cut(s)	39, 129, 294, 337, 474, 837
XapI	RAATTY	1 cut(s)	192
XspI	CTAG	2 cut(s)	309, 857
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.