Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Reverse (-)

33965563 .. 33968868

Gene Structure 3306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1252100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTTTGAAGCTCAAGCAATTTGCAGTCCCAAATGGCTCCAATCTCCCATTCCCACCAGGAACTGCATTCCCAAACCCAGAATTGGATTCCTTACTGGAATTTCAAAACCAAATGTTCTCATTTGCCAAACCCCCATTCACTTCTCCCTTCAGAAGAACATTAAATCTCGGACCCCTTTTGCAGTGAATGCTTCCTCAACTTCAGTTGGAAGGGCAGAATACATCGAGGAGCCTGCTACCAAAGAGAAATTTCAAACATCTTTGAGTCTGCCGGGTTGCTCGAGTTCATTGACCTTGCTTGGAACTGGATACAGGGAAAAGGTCTTTGCAATTATTGGCGTAAAAGTCTATGCTGCAGGACTATATGCGAACCAGTCCATCTTAAATAGTTTGAATGCTTGGAAAGGAAGATCAACGGCTGAGATTCAAGAGGATTCATCCTTGTTCAGCTCCATTTTTCTATCTCCTTCGGTGAAATCATTACAGATTGTTCTGGTTAGAGATGTTGATGGGAAAACTTTTTGGGACGCATTGAATGATGCCATCTCTCCAAGAATCAAATCACCAACTCCTGTTGATGAATCTGCCCTATCCACCTTCCGTAGCATCTTTCAAGGGCAACCTCTTAAGAAAGGAACTTTCATATTTTTGACTTGGCCAGATCCTTCCAAAATGCTTGTCTGTATCTCATCTGATGGGCTTCCGTCTGGTGTGGATGCTGAAATTGAATCAGAAAACGTGGCTTTTGCTCTGTTTGACGTATTCTTCGGAGATACTCCAGTTTCTCCCTCCTTGAAAGATTCGGTTTTGAATGGACTGGAATCAATCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

279

Amino Acids

30.23

Weight (kDa)

8.22

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	83 - 273	5.9e-19	Chalcone-flavanone isomerase
Chalcone_3	PF16036	94 - 270	1e-11	Chalcone isomerase-like
Chalcone_2	PF16035	97 - 269	2.3e-11	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	656
AcoI	YGGCCR	1 cut(s)	656
AcsI	RAATTY	2 cut(s)	99, 248
AcuI	CTGAAG	2 cut(s)	134, 186
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	4 cut(s)	33, 65, 120, 152
AluBI	AGCT	2 cut(s)	11, 450
AluI	AGCT	2 cut(s)	11, 450
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	1 cut(s)	656
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	99, 248
ArsI	GACNNNNNNTTYG	4 cut(s)	663, 695, 749, 781
AspS9I	GGNCC	1 cut(s)	171
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	484, 555
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	765, 798
BalI	TGGCCA	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	4 cut(s)	386, 503, 551, 689
BceAI	ACGGC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	58, 273
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	3 cut(s)	38, 173, 231
BmrFI	CCNGG	2 cut(s)	58, 273
BmsI	GCATC	3 cut(s)	529, 615, 706
BpmI	CTGGAG	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	815
BpuMI	CCSGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	5 cut(s)	100, 310, 373, 779, 822
BseBI	CCWGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	437, 721
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	5 cut(s)	100, 310, 373, 779, 822
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	658
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	272
BslFI	GGGAC	2 cut(s)	12, 539
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	2 cut(s)	12, 539
BsmI	GAATGC	3 cut(s)	66, 193, 400
BsnI	GGCC	1 cut(s)	658
BsoBI	CYCGRG	1 cut(s)	280
Bsp143I	GATC	2 cut(s)	410, 661
BspANI	GGCC	1 cut(s)	658
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	38, 173, 231
BspMAI	CTGCAG	1 cut(s)	358
BspPI	GGATC	1 cut(s)	656
BspTI	CTTAAG	1 cut(s)	626
BsrI	ACTGG	5 cut(s)	100, 310, 373, 779, 822
BssMI	GATC	2 cut(s)	410, 661
Bst2UI	CCWGG	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	437, 721
BstKTI	GATC	2 cut(s)	413, 664
BstMBI	GATC	2 cut(s)	410, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	56, 271
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	658
BtsCI	GGATG	2 cut(s)	437, 721
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	536
CviJI	RGCY	8 cut(s)	11, 37, 232, 419, 450, 658, 700, 743
CviKI_1	RGCY	8 cut(s)	11, 37, 232, 419, 450, 658, 700, 743
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	412, 663
DpnII	GATC	2 cut(s)	410, 661
EaeI	YGGCCR	1 cut(s)	656
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	2 cut(s)	134, 186
Eco88I	CYCGRG	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	56
FaiI	YATR	4 cut(s)	351, 364, 366, 644
FaqI	GGGAC	2 cut(s)	12, 539
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	2 cut(s)	424, 728
Fsp4HI	GCNGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	354
GsuI	CTGGAG	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	658
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	1 cut(s)	536
HinfI	GANTC	9 cut(s)	87, 265, 424, 434, 555, 581, 728, 800, 821
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	2 cut(s)	484, 555
Hpy188I	TCNGA	5 cut(s)	153, 171, 694, 733, 770
Hpy188III	TCNNGA	1 cut(s)	428
HpyAV	CCTTC	5 cut(s)	158, 204, 477, 607, 675
HpyCH4IV	ACGT	2 cut(s)	738, 759
HpyCH4V	TGCA	5 cut(s)	24, 66, 182, 329, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	738, 759
Kzo9I	GATC	2 cut(s)	410, 661
LmnI	GCTCC	3 cut(s)	42, 229, 455
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	3 cut(s)	529, 615, 706
MaeII	ACGT	2 cut(s)	738, 759
MalI	GATC	2 cut(s)	412, 663
MboI	GATC	2 cut(s)	410, 661
MboII	GAAGA	3 cut(s)	166, 420, 757
MflI	RGATCY	1 cut(s)	661
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	6 cut(s)	18, 81, 99, 248, 330, 723
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	205, 220, 424, 633, 799
Mox20I	TGGCCA	1 cut(s)	658
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	3 cut(s)	162, 383, 627
Msp20I	TGGCCA	1 cut(s)	658
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	58, 273
Mva1269I	GAATGC	3 cut(s)	66, 193, 400
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	410, 661
NlaIV	GGNNCC	3 cut(s)	38, 173, 231
PaeR7I	CTCGAG	1 cut(s)	280
PctI	GAATGC	3 cut(s)	66, 193, 400
PfeI	GAWTC	8 cut(s)	87, 424, 434, 555, 581, 728, 800, 821
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	3 cut(s)	38, 173, 231
PspPI	GGNCC	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	661
SaqAI	TTAA	3 cut(s)	162, 383, 627
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	2 cut(s)	410, 661
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	58, 273
SetI	ASST	8 cut(s)	13, 296, 324, 452, 599, 625, 741, 762
SfaNI	GCATC	3 cut(s)	529, 615, 706
SfcI	CTRYAG	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	280
SinI	GGWCC	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	4 cut(s)	12, 280, 626, 830
SmoI	CTYRAG	4 cut(s)	12, 280, 626, 830
Sse9I	AATT	6 cut(s)	18, 81, 99, 248, 330, 723
StyD4I	CCNGG	2 cut(s)	56, 271
TaiI	ACGT	2 cut(s)	741, 762
TaqI	TCGA	2 cut(s)	225, 281
TasI	AATT	6 cut(s)	18, 81, 99, 248, 330, 723
TfiI	GAWTC	8 cut(s)	87, 424, 434, 555, 581, 728, 800, 821
Tru1I	TTAA	3 cut(s)	162, 383, 627
Tru9I	TTAA	3 cut(s)	162, 383, 627
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	276, 426, 594, 631
TspGWI	ACGGA	2 cut(s)	590, 693
TspRI	CASTG	1 cut(s)	189
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	2 cut(s)	99, 248
XhoI	CTCGAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.