Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005178.1

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Forward (+)

67271 .. 72466

Gene Structure 5196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005178.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgtttgaagctgaagcaatttgcactccagcattgctccaattacccattcccaccagaaaatttatctccttaaaacccagaattgggtttctgaccagaatttcaactccaaatgtcttgctttgccaaacccatcattactcttgctctcttttttctactcaacgggaaagtggagctcagaccagaaccagtttctctttaaatgcttcctcatcttcagttggaagtgcagaatacatagaggagcctgctaccaaagtgagatttcaaacatctttgagcttgcctgggtgcttgagttcattggcattgcttggaactggatacagggaaaaagtctttgcaattattggcgttaaagtatatgctgcgggattatacgtaaaccagtctatcttaaataacttgaatgccaggaaaggaagatcagctgctgagattcagagggatccatccttgttcagctccatttttcaatctccttttgagaaatcattacagattattctggttagagatgttgatgggaaaacattctggaatgccttgaatgatgccatctctccaagaatcaaatcacccacttctgttgatgagtccgcactgtccacattccgcagtacctttgaaaggcaaccccttaaaaagggaacattcatatttttgacttggccgcagacttccaaaatgcttgtttctatctcatctaatgggcttccgtctagtgtggatgctacaatagaatcagaaaacgtgagttcggcactttttgatgtgttctttggagatgctccagtttctccccccttaaaggcttctgttgcaactggattggaatcattcctcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

285

Amino Acids

31.04

Weight (kDa)

9.19

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	377, 606, 622, 680
AclWI	GGATC	2 cut(s)	449, 462
AcoI	YGGCCR	1 cut(s)	677
AcsI	RAATTY	2 cut(s)	62, 102
AcuI	CTGAAG	2 cut(s)	33, 207
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	5 cut(s)	86, 87, 636, 652, 817
AgsI	TTSAA	7 cut(s)	8, 108, 275, 415, 482, 556, 635
AjnI	CCWGG	2 cut(s)	292, 419
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	11, 182, 288, 437, 471
AluI	AGCT	5 cut(s)	11, 182, 288, 437, 471
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	449, 462
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	2 cut(s)	374, 437
ApoI	RAATTY	2 cut(s)	62, 102
Asp700I	GAANNNNTTC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	576
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	361, 424
BccI	CCATC	4 cut(s)	144, 466, 524, 572
BciT130I	CCWGG	2 cut(s)	294, 421
BciVI	GTATCC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	729
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	375, 438, 680
BlsI	GCNGC	3 cut(s)	376, 439, 681
Bme1390I	CCNGG	2 cut(s)	294, 421
BmiI	GGNNCC	2 cut(s)	252, 456
BmrFI	CCNGG	2 cut(s)	294, 421
BmsI	GCATC	3 cut(s)	550, 727, 784
BpmI	CTGGAG	2 cut(s)	12, 783
BpuEI	CTTGAG	2 cut(s)	322, 836
BsaAI	YACGTR	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	841
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	5 cut(s)	86, 87, 636, 652, 817
Bse1I	ACTGG	5 cut(s)	195, 331, 394, 800, 838
Bse3DI	GCAATG	2 cut(s)	32, 314
Bse8I	GATNNNNATC	1 cut(s)	841
BseBI	CCWGG	2 cut(s)	294, 421
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	2 cut(s)	458, 742
BseJI	GATNNNNATC	1 cut(s)	841
BseLI	CCNNNNNNNGG	5 cut(s)	86, 87, 636, 652, 817
BseMI	GCAATG	2 cut(s)	32, 314
BseMII	CTCAG	2 cut(s)	197, 432
BseNI	ACTGG	5 cut(s)	195, 331, 394, 800, 838
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	361, 424
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	184
BslI	CCNNNNNNNGG	5 cut(s)	86, 87, 636, 652, 817
BsmI	GAATGC	2 cut(s)	421, 553
BsnI	GGCC	1 cut(s)	679
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	431, 454
BspACI	CCGC	4 cut(s)	377, 606, 622, 680
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	2 cut(s)	196, 433
BspLI	GGNNCC	2 cut(s)	252, 456
BspPI	GGATC	2 cut(s)	449, 462
BsrDI	GCAATG	2 cut(s)	32, 314
BsrI	ACTGG	5 cut(s)	195, 331, 394, 800, 838
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	2 cut(s)	431, 454
Bst2UI	CCWGG	2 cut(s)	294, 421
Bst4CI	ACNGT	1 cut(s)	612
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	255, 290
BstDEI	CTNAG	2 cut(s)	183, 441
BstENI	CCTNNNNNAGG	2 cut(s)	634, 650
BstF5I	GGATG	2 cut(s)	458, 742
BstKTI	GATC	2 cut(s)	434, 457
BstMBI	GATC	2 cut(s)	431, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstNI	CCWGG	2 cut(s)	294, 421
BstSCI	CCNGG	2 cut(s)	292, 419
BstSNI	TACGTA	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	361, 424
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	2 cut(s)	458, 742
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	2 cut(s)	255, 290
CaiI	CAGNNNCTG	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	627
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviJI	RGCY	9 cut(s)	11, 182, 253, 288, 437, 471, 679, 721, 821
CviKI_1	RGCY	9 cut(s)	11, 182, 253, 288, 437, 471, 679, 721, 821
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	2 cut(s)	183, 441
DpnI	GATC	2 cut(s)	433, 456
DpnII	GATC	2 cut(s)	431, 454
DraI	TTTAAA	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	677
Ecl136II	GAGCTC	1 cut(s)	182
Eco105I	TACGTA	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	33, 207
EcoICRI	GAGCTC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	2 cut(s)	634, 650
EcoRII	CCWGG	2 cut(s)	292, 419
EcoT38I	GRGCYC	1 cut(s)	184
FaiI	YATR	5 cut(s)	245, 370, 372, 385, 665
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	375, 438, 680
FokI	GGATG	2 cut(s)	445, 749
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	375, 438, 680
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	3 cut(s)	375, 438, 680
GsuI	CTGGAG	2 cut(s)	12, 783
HaeIII	GGCC	1 cut(s)	679
HinfI	GANTC	5 cut(s)	445, 576, 602, 749, 842
HphI	GGTGA	1 cut(s)	576
Hpy166II	GTNNAC	2 cut(s)	391, 615
Hpy188I	TCNGA	4 cut(s)	96, 186, 450, 754
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	2 cut(s)	391, 615
HpyCH4III	ACNGT	1 cut(s)	612
HpyCH4IV	ACGT	2 cut(s)	387, 759
HpyCH4V	TGCA	4 cut(s)	24, 236, 350, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	2 cut(s)	183, 441
HpySE526I	ACGT	2 cut(s)	387, 759
Kzo9I	GATC	2 cut(s)	431, 454
LmnI	GCTCC	5 cut(s)	42, 179, 250, 476, 802
Lsp1109I	GCAGC	2 cut(s)	361, 424
LweI	GCATC	3 cut(s)	550, 727, 784
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	2 cut(s)	387, 759
MalI	GATC	2 cut(s)	433, 456
MboI	GATC	2 cut(s)	431, 454
MboII	GAAGA	2 cut(s)	213, 441
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	6 cut(s)	18, 41, 62, 84, 102, 351
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	3 cut(s)	226, 241, 444
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	6 cut(s)	74, 206, 363, 404, 648, 815
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	2 cut(s)	294, 421
Mva1269I	GAATGC	2 cut(s)	421, 553
MvaI	CCWGG	2 cut(s)	294, 421
MwoI	GCNNNNNNNGC	1 cut(s)	827
NdeII	GATC	2 cut(s)	431, 454
NlaIV	GGNNCC	2 cut(s)	252, 456
PctI	GAATGC	2 cut(s)	421, 553
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	4 cut(s)	445, 576, 749, 842
PkrI	GCNGC	3 cut(s)	376, 439, 681
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	292, 419
PspGI	CCWGG	2 cut(s)	292, 419
PspN4I	GGNNCC	2 cut(s)	252, 456
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	6 cut(s)	74, 206, 363, 404, 648, 815
SatI	GCNGC	3 cut(s)	375, 438, 680
Sau3AI	GATC	2 cut(s)	431, 454
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	294, 421
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	8 cut(s)	13, 184, 290, 390, 439, 473, 632, 762
SfaNI	GCATC	3 cut(s)	550, 727, 784
SmlI	CTYRAG	2 cut(s)	301, 851
SmoI	CTYRAG	2 cut(s)	301, 851
SnaBI	TACGTA	1 cut(s)	388
Sse9I	AATT	6 cut(s)	18, 41, 62, 84, 102, 351
SsiI	CCGC	4 cut(s)	377, 606, 622, 680
SspMI	CTAG	1 cut(s)	729
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	2 cut(s)	292, 419
TaaI	ACNGT	1 cut(s)	612
TaiI	ACGT	2 cut(s)	390, 762
TasI	AATT	6 cut(s)	18, 41, 62, 84, 102, 351
TauI	GCSGC	1 cut(s)	682
TfiI	GAWTC	4 cut(s)	445, 576, 749, 842
Tru1I	TTAA	6 cut(s)	74, 206, 363, 404, 648, 815
Tru9I	TTAA	6 cut(s)	74, 206, 363, 404, 648, 815
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	2 cut(s)	374, 437
TspDTI	ATGAA	2 cut(s)	297, 652
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	615
XagI	CCTNNNNNAGG	2 cut(s)	634, 650
XapI	RAATTY	2 cut(s)	62, 102
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.