Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Forward (+)

22721486 .. 22726408

Gene Structure 4923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG205100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATTTCAGGATACAGGGAAAAAGTCTTTGCAATTATTGGCGTTAAAGTATATGCTGCGGGATTATACGTAAATCAGTCTATCTTAAATAACTTGAATGCCTGGAAAGGAAGATCAGCTGCTGAGATTCAGAGGGATCCATCCTTGTTCAGCTCCATTTTTCAATCTCCTTTTGAGAAATCATTACAGATTATTCTGGTTAGAGATGTTGATGGGAAAACATTCTGGAATGCCTTGAATGATGCCATCTCTCCAAGAATCAAATCACCCACTTCTGTTGATGAGTCCGCACTGTCCACATTCCGCAGTACCTTCGAAAGGCAACCCCTTAAAAAGGGAACATTCATATTTTTGACTTGGCCGCAGACTTCCAAAATGCTTGTTTCTATCTCATCTAATGGGCTTCCGTCTAGTGTGGATGCTACAATAGAATCAGAAAACGTGAGTTCGGCACTTTTTGATGTGTTCTTTGGAGATACTCCAGCTTCTCCCCCCTTAAAGGCTTCTGTTGCAACTGGATTGGAATCATTCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

179

Amino Acids

19.61

Weight (kDa)

8.89

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_3	PF16036	4 - 168	7.4e-10	Chalcone isomerase-like
Chalcone_2	PF16035	11 - 171	7.2e-12	Chalcone isomerase like
Chalcone	PF02431	15 - 176	2.2e-20	Chalcone-flavanone isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	59, 288, 304, 362
AclWI	GGATC	2 cut(s)	131, 144
AcoI	YGGCCR	1 cut(s)	359
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	3 cut(s)	318, 334, 499
AgsI	TTSAA	3 cut(s)	97, 164, 238
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	119, 153, 485
AluI	AGCT	3 cut(s)	119, 153, 485
AlwI	GGATC	2 cut(s)	131, 144
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	56, 119
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	258
AsuII	TTCGAA	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	43, 106
BccI	CCATC	3 cut(s)	148, 206, 254
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	5
BisI	GCNGC	3 cut(s)	57, 120, 362
BlsI	GCNGC	3 cut(s)	58, 121, 363
Bme1390I	CCNGG	1 cut(s)	103
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	2 cut(s)	232, 409
BpmI	CTGGAG	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	518
BsaAI	YACGTR	1 cut(s)	70
BsaBI	GATNNNNATC	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	3 cut(s)	318, 334, 499
Bse1I	ACTGG	1 cut(s)	520
Bse8I	GATNNNNATC	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	140, 424
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	3 cut(s)	318, 334, 499
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	43, 106
BshFI	GGCC	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	318, 334, 499
BsmI	GAATGC	2 cut(s)	103, 235
BsnI	GGCC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	113, 136
BspACI	CCGC	4 cut(s)	59, 288, 304, 362
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	131, 144
BspT104I	TTCGAA	1 cut(s)	315
BsrI	ACTGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	113, 136
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	294
BstBAI	YACGTR	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	123
BstENI	CCTNNNNNAGG	2 cut(s)	316, 332
BstF5I	GGATG	2 cut(s)	140, 424
BstKTI	GATC	2 cut(s)	116, 139
BstMBI	GATC	2 cut(s)	113, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSNI	TACGTA	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	43, 106
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	5
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	2 cut(s)	140, 424
BtsIMutI	CAGTG	1 cut(s)	290
CaiI	CAGNNNCTG	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	309
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviJI	RGCY	6 cut(s)	119, 153, 361, 403, 485, 503
CviKI_1	RGCY	6 cut(s)	119, 153, 361, 403, 485, 503
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	115, 138
DpnII	GATC	2 cut(s)	113, 136
EaeI	YGGCCR	1 cut(s)	359
Eco105I	TACGTA	1 cut(s)	70
EcoNI	CCTNNNNNAGG	2 cut(s)	316, 332
EcoRII	CCWGG	1 cut(s)	101
FaiI	YATR	4 cut(s)	52, 54, 67, 347
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	3 cut(s)	57, 120, 362
FokI	GGATG	2 cut(s)	127, 431
Fsp4HI	GCNGC	3 cut(s)	57, 120, 362
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	3 cut(s)	57, 120, 362
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	361
HinfI	GANTC	5 cut(s)	127, 258, 284, 431, 524
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	2 cut(s)	132, 436
Hpy188III	TCNNGA	2 cut(s)	9, 226
Hpy8I	GTNNAC	1 cut(s)	297
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	294
HpyCH4IV	ACGT	2 cut(s)	69, 441
HpyCH4V	TGCA	2 cut(s)	32, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	2 cut(s)	69, 441
Kzo9I	GATC	2 cut(s)	113, 136
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	6 cut(s)	88, 115, 182, 211, 495, 501
Lsp1109I	GCAGC	2 cut(s)	43, 106
LweI	GCATC	2 cut(s)	232, 409
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	2 cut(s)	69, 441
MalI	GATC	2 cut(s)	115, 138
MboI	GATC	2 cut(s)	113, 136
MboII	GAAGA	1 cut(s)	123
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	33
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	221
MseI	TTAA	4 cut(s)	45, 86, 330, 497
MspA1I	CMGCKG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	103
Mva1269I	GAATGC	2 cut(s)	103, 235
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	509
NdeII	GATC	2 cut(s)	113, 136
NlaIV	GGNNCC	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	315
PctI	GAATGC	2 cut(s)	103, 235
PdmI	GAANNNNTTC	1 cut(s)	221
PfeI	GAWTC	4 cut(s)	127, 258, 431, 524
PkrI	GCNGC	3 cut(s)	58, 121, 363
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	4 cut(s)	45, 86, 330, 497
SatI	GCNGC	3 cut(s)	57, 120, 362
Sau3AI	GATC	2 cut(s)	113, 136
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	6 cut(s)	72, 121, 155, 314, 444, 487
SfaNI	GCATC	2 cut(s)	232, 409
SfuI	TTCGAA	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SnaBI	TACGTA	1 cut(s)	70
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	4 cut(s)	59, 288, 304, 362
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	294
TaiI	ACGT	2 cut(s)	72, 444
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	33
TauI	GCSGC	1 cut(s)	364
TfiI	GAWTC	4 cut(s)	127, 258, 431, 524
Tru1I	TTAA	4 cut(s)	45, 86, 330, 497
Tru9I	TTAA	4 cut(s)	45, 86, 330, 497
TscAI	CASTG	1 cut(s)	297
TseI	GCWGC	2 cut(s)	56, 119
TspDTI	ATGAA	1 cut(s)	334
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	297
XagI	CCTNNNNNAGG	2 cut(s)	316, 332
XmnI	GAANNNNTTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.