Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Forward (+)

8793209 .. 8796967

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTTTGAAGCTCAAGCAATTTGCACTCCAACAAGGCTCCAATTACCCTTTTTTACCAGAAACTGCATTTCCAGACCCAGAATTGGCTTTGTGGCTAGAATTTCAAATCCAAATGAACTGTTGTGCCAAACCCACTCTTGCTCTTTCTTGTCTCCTCCAGAGGACATTAGAACTCAGACCCGTTTCACATTCAATGCTTCCTCATCTTCAGTTGGAAGTGCAGAATACATAGAGGAACCTGCTACCAAAGTGAGATTTCAGACATCTTTGAGCTTACCAGGTTGCTCGATTTCATTGTCGTTGCTTGGAACCGGATACAGGGAAAAAGTCTTTGCAATTATTGGCGTTAAAGTCTATGCTGCAGGGCTATATGTGAACCAGTCCATCTTAAATAGTTTGAATGCTTGGAAAGGTAGATCAGCTGCTGAGATTCAAGAGGATTCGTCATTGTTCAGCACCATTTTTCAATCTCCTCTGGAGAAATCATTACAGATTGTTCTGGTTAGAGATGTTGAAGGTAAAACTTTTTGGGATGCCTTGAATGATGCTATCTCCCCAAGAATCAAATCACCCACTCCTGTTGATGAATCAGCACTGTCCACATTCCGTAGTATCTTCCAAGGGCAACCCCTTAAAAAGGGAACTTTCATATTTTTGACTTGGCCAGACCCTTCGAAAATGCTTGTTTGCATCTCTGCTGATGGGCTTCCGTCTAGTGTGGATGCTGCAATAGAATCAGAAAATGTGGCTTTGGCTCTTTTCGATGTATTCTTTGGAGATACTCCAGTTTCTCCCTCCTTAAAATCATCCGTTGTGAATGGACTGGAATCAGTCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

281

Amino Acids

30.56

Weight (kDa)

5.96

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	3 cut(s)	83, 318, 637
AgsI	TTSAA	8 cut(s)	8, 105, 193, 400, 434, 467, 515, 541
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	11, 273, 422
AluI	AGCT	3 cut(s)	11, 273, 422
Alw26I	GTCTC	1 cut(s)	156
AlwNI	CAGNNNCTG	2 cut(s)	63, 425
AoxI	GGCC	1 cut(s)	662
ApeKI	GCWGC	3 cut(s)	359, 422, 725
ApoI	RAATTY	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	561
AsuII	TTCGAA	1 cut(s)	674
BaeI	ACNNNNGTAYC	2 cut(s)	771, 804
BalI	TGGCCA	1 cut(s)	664
BbvI	GCAGC	3 cut(s)	346, 409, 712
BccI	CCATC	2 cut(s)	392, 695
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	308
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	96, 714
BfmI	CTRYAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	308
BisI	GCNGC	3 cut(s)	360, 423, 726
BlsI	GCNGC	3 cut(s)	361, 424, 727
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	3 cut(s)	38, 237, 310
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	4 cut(s)	523, 535, 699, 712
BpmI	CTGGAG	3 cut(s)	141, 497, 768
Bpu14I	TTCGAA	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	821
BsaJI	CCNNGG	1 cut(s)	619
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 318, 637
Bse1I	ACTGG	3 cut(s)	379, 785, 828
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	3 cut(s)	538, 727, 806
BseLI	CCNNNNNNNGG	3 cut(s)	83, 318, 637
BseMII	CTCAG	2 cut(s)	188, 417
BseNI	ACTGG	3 cut(s)	379, 785, 828
BseRI	GAGGAG	2 cut(s)	144, 462
BseXI	GCAGC	3 cut(s)	346, 409, 712
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	83, 318, 637
BsmAI	GTCTC	1 cut(s)	156
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	664
Bsp119I	TTCGAA	1 cut(s)	674
Bsp143I	GATC	1 cut(s)	416
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	2 cut(s)	187, 418
BspLI	GGNNCC	3 cut(s)	38, 237, 310
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	247
BspT104I	TTCGAA	1 cut(s)	674
BsrI	ACTGG	3 cut(s)	379, 785, 828
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	1 cut(s)	416
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	120, 597
BstBI	TTCGAA	1 cut(s)	674
BstDEI	CTNAG	2 cut(s)	174, 426
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	3 cut(s)	538, 727, 806
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	346, 409, 712
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	664
BtsCI	GGATG	3 cut(s)	538, 727, 806
BtsIMutI	CAGTG	1 cut(s)	593
BveI	ACCTGC	1 cut(s)	247
CaiI	CAGNNNCTG	2 cut(s)	63, 425
CsiI	ACCWGGT	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
DdeI	CTNAG	2 cut(s)	174, 426
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	662
Eco130I	CCWWGG	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	619
FaiI	YATR	5 cut(s)	230, 357, 370, 372, 650
Fnu4HI	GCNGC	3 cut(s)	360, 423, 726
FokI	GGATG	3 cut(s)	545, 734, 793
Fsp4HI	GCNGC	3 cut(s)	360, 423, 726
FspBI	CTAG	2 cut(s)	96, 714
GluI	GCNGC	3 cut(s)	360, 423, 726
GsuI	CTGGAG	3 cut(s)	141, 497, 768
HaeIII	GGCC	1 cut(s)	664
HapII	CCGG	1 cut(s)	312
HinfI	GANTC	6 cut(s)	430, 440, 561, 587, 734, 827
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	561
Hpy166II	GTNNAC	2 cut(s)	376, 600
Hpy188I	TCNGA	3 cut(s)	177, 261, 739
Hpy188III	TCNNGA	4 cut(s)	72, 158, 434, 476
Hpy8I	GTNNAC	2 cut(s)	376, 600
HpyAV	CCTTC	2 cut(s)	509, 681
HpyCH4III	ACNGT	2 cut(s)	120, 597
HpyCH4V	TGCA	7 cut(s)	24, 66, 221, 335, 362, 690, 728
HpyF3I	CTNAG	2 cut(s)	174, 426
Kzo9I	GATC	1 cut(s)	416
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	3 cut(s)	346, 409, 712
LweI	GCATC	4 cut(s)	523, 535, 699, 712
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	2 cut(s)	96, 714
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	2 cut(s)	198, 607
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	5 cut(s)	18, 41, 81, 99, 336
MluNI	TGGCCA	1 cut(s)	664
MmeI	TCCRAC	2 cut(s)	53, 193
MnlI	CCTC	7 cut(s)	154, 165, 211, 226, 430, 483, 805
Mox20I	TGGCCA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	4 cut(s)	348, 389, 633, 800
Msp20I	TGGCCA	1 cut(s)	664
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	416
NlaIV	GGNNCC	3 cut(s)	38, 237, 310
NspV	TTCGAA	1 cut(s)	674
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	6 cut(s)	430, 440, 561, 587, 734, 827
PkrI	GCNGC	3 cut(s)	361, 424, 727
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	38, 237, 310
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	63, 425
PvuII	CAGCTG	1 cut(s)	422
SaqAI	TTAA	4 cut(s)	348, 389, 633, 800
SatI	GCNGC	3 cut(s)	360, 423, 726
Sau3AI	GATC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	7 cut(s)	13, 241, 275, 283, 415, 424, 520
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	4 cut(s)	523, 535, 699, 712
SfcI	CTRYAG	1 cut(s)	360
SfuI	TTCGAA	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	12, 836
SmoI	CTYRAG	2 cut(s)	12, 836
Sse9I	AATT	5 cut(s)	18, 41, 81, 99, 336
SspMI	CTAG	2 cut(s)	96, 714
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	2 cut(s)	120, 597
TaqI	TCGA	3 cut(s)	287, 674, 762
TasI	AATT	5 cut(s)	18, 41, 81, 99, 336
TfiI	GAWTC	6 cut(s)	430, 440, 561, 587, 734, 827
Tru1I	TTAA	4 cut(s)	348, 389, 633, 800
Tru9I	TTAA	4 cut(s)	348, 389, 633, 800
TscAI	CASTG	1 cut(s)	600
TseI	GCWGC	3 cut(s)	359, 422, 725
TspDTI	ATGAA	4 cut(s)	129, 282, 600, 637
TspGWI	ACGGA	3 cut(s)	596, 699, 799
TspRI	CASTG	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	1 cut(s)	99
XspI	CTAG	2 cut(s)	96, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.