Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Reverse (-)

39018574 .. 39020992

Gene Structure 2419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1273600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTCCAATTTCCCACTCCCACCAGGAACTGCATTCCCAAACCCAGAATTGGATTCCCGACTGGAATTTCAAACCCAAATGTTCTCATTTGCCAAAACCCCATTCACTTCCCCCCTCACAAGAACATCAAATCTCAGACCCCTTTTGCAGTAAATGCTTCCTCAACTTCAGTTGGAAATGCAGAATTATAGAGGAACCTGCCACCAAAGAGAAATTTCAAACATCTTTGAGTTTACCGGGCTGTTCGAGTTCATTGACGTTGCTTGGAACTGGATACAGGGAAAAGGTCTTTGCAATTATTGGCGTAGAAGTCTATGCTGCAGGACTATATGTGAACCAGTCCGTCTTAAATAGTTTGAATGCTTGGAAAGGAAGATCAGCTGCTGAGATTCAAGAGGATTCATCCTTGTTCAACTCTATTTTTCTATCTCCTTCGGAGAAATCGATACAGATTGTTCTGGTTAGAGATGTTGATGGGAAAACTTTTTGGGACGCCTTGAATGATGCCATCTCTCCAAGAATCAAATCACCAACCCCTGTTGATGAATCCGCACTGTCCACATTCCGTAGCATCTTTCAAGGGCAACCTCTTAAGAAAGGAACTTTCATATTTTTGACTTGGCCAGACCCTTCCAAAATGCTTGTCTCTATCTCGTCTGATGGGCTTCCGTCTGGAGTGGATGCTGAAATTAAATCAGAAAATGTGGCTTTTGCTCTTTTTGATGTATTCGTTGGAGATACTCCTGTTTCTTTCTCCTTGAAAGCTTCAGTTGTGAAAGGACTGGAATCAATCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

268

Amino Acids

29.47

Weight (kDa)

6.31

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	72 - 263	7.8e-20	Chalcone-flavanone isomerase
Chalcone_2	PF16035	86 - 259	1.7e-11	Chalcone isomerase like
Chalcone_3	PF16036	145 - 257	2.7e-06	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AciI	CCGC	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	623
AcsI	RAATTY	2 cut(s)	67, 215
AcuI	CTGAAG	2 cut(s)	154, 753
AcyI	GRCGYC	1 cut(s)	495
AfiI	CCNNNNNNNGG	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	8 cut(s)	73, 221, 361, 395, 415, 502, 581, 763
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
AluBI	AGCT	2 cut(s)	383, 767
AluI	AGCT	2 cut(s)	383, 767
Alw26I	GTCTC	1 cut(s)	652
AlwNI	CAGNNNCTG	2 cut(s)	31, 386
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	320, 383
ApoI	RAATTY	2 cut(s)	67, 215
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	522
BaeI	ACNNNNGTAYC	2 cut(s)	732, 765
BalI	TGGCCA	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	307, 370
BccI	CCATC	3 cut(s)	470, 518, 656
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	652
BfmI	CTRYAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	321, 384
BlsI	GCNGC	2 cut(s)	322, 385
Bme1390I	CCNGG	2 cut(s)	26, 240
BmiI	GGNNCC	2 cut(s)	6, 198
BmrFI	CCNGG	2 cut(s)	26, 240
BmsI	GCATC	3 cut(s)	496, 582, 673
BpmI	CTGGAG	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	4 cut(s)	68, 277, 340, 789
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	446
BseGI	GGATG	2 cut(s)	404, 688
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	150, 378
BseNI	ACTGG	4 cut(s)	68, 277, 340, 789
BseXI	GCAGC	2 cut(s)	307, 370
BshFI	GGCC	1 cut(s)	625
BshVI	ATCGAT	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	506
BsmI	GAATGC	2 cut(s)	34, 367
BsnI	GGCC	1 cut(s)	625
Bsp143I	GATC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	149, 379
BspDI	ATCGAT	1 cut(s)	446
BspLI	GGNNCC	2 cut(s)	6, 198
BspMAI	CTGCAG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	208
BspTI	CTTAAG	1 cut(s)	593
BsrI	ACTGG	4 cut(s)	68, 277, 340, 789
BssMI	GATC	1 cut(s)	377
BssNI	GRCGYC	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	495
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	136, 387
BstF5I	GGATG	2 cut(s)	404, 688
BstKTI	GATC	1 cut(s)	380
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	377
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	2 cut(s)	24, 238
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	307, 370
Bsu15I	ATCGAT	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	625
BsuTUI	ATCGAT	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	404, 688
BtsIMutI	CAGTG	1 cut(s)	554
BveI	ACCTGC	1 cut(s)	208
CaiI	CAGNNNCTG	2 cut(s)	31, 386
ClaI	ATCGAT	1 cut(s)	446
CseI	GACGC	1 cut(s)	503
CviJI	RGCY	7 cut(s)	5, 243, 383, 625, 667, 710, 767
CviKI_1	RGCY	7 cut(s)	5, 243, 383, 625, 667, 710, 767
DdeI	CTNAG	2 cut(s)	136, 387
DpnI	GATC	1 cut(s)	379
DpnII	GATC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	623
Eco57I	CTGAAG	2 cut(s)	154, 753
EcoRII	CCWGG	1 cut(s)	24
FaiI	YATR	5 cut(s)	191, 318, 331, 333, 611
FaqI	GGGAC	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	321, 384
FokI	GGATG	2 cut(s)	391, 695
Fsp4HI	GCNGC	2 cut(s)	321, 384
GluI	GCNGC	2 cut(s)	321, 384
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	625
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	6 cut(s)	55, 391, 401, 522, 548, 788
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	1 cut(s)	522
Hpy166II	GTNNAC	3 cut(s)	236, 337, 561
Hpy188I	TCNGA	4 cut(s)	139, 439, 661, 700
Hpy188III	TCNNGA	3 cut(s)	59, 395, 675
Hpy8I	GTNNAC	3 cut(s)	236, 337, 561
HpyAV	CCTTC	2 cut(s)	444, 642
HpyCH4III	ACNGT	1 cut(s)	558
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	5 cut(s)	34, 150, 183, 296, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	136, 387
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	2 cut(s)	307, 370
LweI	GCATC	3 cut(s)	496, 582, 673
MaeII	ACGT	1 cut(s)	260
MalI	GATC	1 cut(s)	379
MboI	GATC	1 cut(s)	377
MboII	GAAGA	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	625
MluCI	AATT	7 cut(s)	9, 49, 67, 186, 215, 297, 690
MluNI	TGGCCA	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	155, 715
MnlI	CCTC	5 cut(s)	127, 173, 187, 391, 600
Mox20I	TGGCCA	1 cut(s)	625
MscI	TGGCCA	1 cut(s)	625
MseI	TTAA	3 cut(s)	350, 594, 693
Msp20I	TGGCCA	1 cut(s)	625
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	26, 240
Mva1269I	GAATGC	2 cut(s)	34, 367
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	377
NlaIV	GGNNCC	2 cut(s)	6, 198
PcsI	WCGNNNNNNNCGW	1 cut(s)	443
PctI	GAATGC	2 cut(s)	34, 367
PfeI	GAWTC	6 cut(s)	55, 391, 401, 522, 548, 788
PkrI	GCNGC	2 cut(s)	322, 385
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	6, 198
PstI	CTGCAG	1 cut(s)	325
PstNI	CAGNNNCTG	2 cut(s)	31, 386
PvuII	CAGCTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	350, 594, 693
SatI	GCNGC	2 cut(s)	321, 384
Sau3AI	GATC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	26, 240
SetI	ASST	6 cut(s)	202, 263, 291, 385, 592, 769
SfaNI	GCATC	3 cut(s)	496, 582, 673
SfcI	CTRYAG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	593, 797
SmoI	CTYRAG	2 cut(s)	593, 797
Sse9I	AATT	7 cut(s)	9, 49, 67, 186, 215, 297, 690
SsiI	CCGC	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	24, 238
TaaI	ACNGT	1 cut(s)	558
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	248, 446
TasI	AATT	7 cut(s)	9, 49, 67, 186, 215, 297, 690
TfiI	GAWTC	6 cut(s)	55, 391, 401, 522, 548, 788
Tru1I	TTAA	3 cut(s)	350, 594, 693
Tru9I	TTAA	3 cut(s)	350, 594, 693
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	2 cut(s)	320, 383
TspDTI	ATGAA	4 cut(s)	243, 393, 561, 598
TspGWI	ACGGA	3 cut(s)	334, 557, 660
TspRI	CASTG	1 cut(s)	561
Vha464I	CTTAAG	1 cut(s)	593
XapI	RAATTY	2 cut(s)	67, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.