Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Forward (+)

11052038 .. 11055593

Gene Structure 3556 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTTGAAGCTGAAGCAATTTGCTCTCCAGCATTGCTCCAACTACCTATTCACACCCGAAAATTTATCTCCTCAAAACCCAGAATTGGGTTTCTGACCAGAATCTCAACTCCAGATGTATTGCTTTCCCAAACCCATCATCAGTCTTGCTCTCTCTTTTCTATTCAAAAGGACAGTAGAGCTCAGACCAGAACCAGTTTCCCTTTAAATGCTTCCTCATCTTCAGTTGAAAGTGCAGAATACATAGAGGAGCCTGCTACCAATGTGAGATTTCAAACATCTGTGAGCTTGCCTGGGTGCTCAAGTTCATTGGCATTGCTTGGAACTGGATACAGGGAAAAAGTCTTCGCAATTATTGGCGTTAAAGTATATGCTGCGGGATTATACGTAAATCAGTCCATCTTAAATAACTTGAATGCTTGGAAAGGAAGACCAGCTGCTGAGATTCAAAAGGATCCATCCCTGTTCAGCTCCATGTTTCAATCTCCTTCTGAGAAATCATTACAGATTATTCTGGTTAGAGATGTTGATGGGAAAACATTCTGGGATGCCTTGAATGATGCCATCTCTCCAAGAATCAAATCACCCACTCCTGTTGATGAGTCTGCACTGTCCACATTTCGCAGTACCTTCGAAGGGCAACCCCTTAAAAAGGGAACATTCATATTTTTGACTTGGCTGCAGGCTTCCAAAATGCTTGTTTCTATCTCATCTAATGGGCTTCCGTCTAGTGTGGATGCTACAATAGAATCAGAAAACGTGAGTTCGGTGCTTTTTGATGTATTCTTTGGAGACACTCCTGTTTCTCCTACCTTAAAGGCTTCTGTTGCAACCGGATTGGAATCAGTCCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

286

Amino Acids

30.96

Weight (kDa)

7.69

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	88 - 281	1.1e-21	Chalcone-flavanone isomerase
Chalcone_3	PF16036	88 - 274	4.2e-13	Chalcone isomerase-like
Chalcone_2	PF16035	104 - 277	6.4e-13	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	377
AclWI	GGATC	2 cut(s)	449, 462
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	33, 207
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	4 cut(s)	86, 87, 636, 652
AgsI	TTSAA	8 cut(s)	8, 167, 230, 275, 415, 449, 482, 556
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	5 cut(s)	11, 182, 288, 437, 471
AluI	AGCT	5 cut(s)	11, 182, 288, 437, 471
Alw21I	GWGCWC	2 cut(s)	184, 302
Alw26I	GTCTC	1 cut(s)	786
AlwI	GGATC	2 cut(s)	449, 462
AlwNI	CAGNNNCTG	1 cut(s)	440
ApeKI	GCWGC	3 cut(s)	374, 437, 679
ApoI	RAATTY	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	576
AsuII	TTCGAA	1 cut(s)	633
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	184
BbsI	GAAGAC	2 cut(s)	337, 436
Bbv12I	GWGCWC	2 cut(s)	184, 302
BbvI	GCAGC	3 cut(s)	361, 424, 666
BccI	CCATC	5 cut(s)	144, 407, 466, 524, 572
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	786
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	1 cut(s)	680
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	375, 438, 680
BlsI	GCNGC	3 cut(s)	376, 439, 681
Bme1390I	CCNGG	1 cut(s)	294
BmiI	GGNNCC	2 cut(s)	252, 456
BmrFI	CCNGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	538, 550, 727
BpiI	GAAGAC	2 cut(s)	337, 436
BpmI	CTGGAG	2 cut(s)	12, 96
Bpu14I	TTCGAA	1 cut(s)	633
BpuEI	CTTGAG	2 cut(s)	286, 836
BsaAI	YACGTR	1 cut(s)	388
BsaBI	GATNNNNATC	1 cut(s)	841
BsaJI	CCNNGG	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	833
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 87, 636, 652
Bse1I	ACTGG	2 cut(s)	195, 331
Bse3DI	GCAATG	2 cut(s)	32, 314
Bse8I	GATNNNNATC	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	3 cut(s)	458, 553, 742
BseJI	GATNNNNATC	1 cut(s)	841
BseLI	CCNNNNNNNGG	4 cut(s)	86, 87, 636, 652
BseMI	GCAATG	2 cut(s)	32, 314
BseMII	CTCAG	3 cut(s)	197, 432, 483
BseNI	ACTGG	2 cut(s)	195, 331
BseRI	GAGGAG	2 cut(s)	61, 263
BseXI	GCAGC	3 cut(s)	361, 424, 666
BsgI	GTGCAG	2 cut(s)	255, 591
BsiHKAI	GWGCWC	2 cut(s)	184, 302
BsiSI	CCGG	1 cut(s)	834
BslI	CCNNNNNNNGG	4 cut(s)	86, 87, 636, 652
BsmAI	GTCTC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	421
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	184, 302
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	196, 433, 484
BspLI	GGNNCC	2 cut(s)	252, 456
BspMAI	CTGCAG	1 cut(s)	684
BspPI	GGATC	2 cut(s)	449, 462
BspT104I	TTCGAA	1 cut(s)	633
BsrDI	GCAATG	2 cut(s)	32, 314
BsrI	ACTGG	2 cut(s)	195, 331
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	176, 612
BstBAI	YACGTR	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	3 cut(s)	255, 290, 684
BstDEI	CTNAG	3 cut(s)	183, 441, 492
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	458, 553, 742
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	786
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstNI	CCWGG	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	680
BstSNI	TACGTA	1 cut(s)	388
BstV1I	GCAGC	3 cut(s)	361, 424, 666
BstV2I	GAAGAC	2 cut(s)	337, 436
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	458, 553, 742
BtsIMutI	CAGTG	1 cut(s)	608
Cac8I	GCNNGC	3 cut(s)	255, 290, 684
CaiI	CAGNNNCTG	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	627
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	1 cut(s)	475
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	3 cut(s)	183, 441, 492
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DraI	TTTAAA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	182
Eco105I	TACGTA	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	182
Eco57I	CTGAAG	2 cut(s)	33, 207
EcoICRI	GAGCTC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	1 cut(s)	478
FaiI	YATR	6 cut(s)	245, 370, 372, 385, 476, 665
FatI	CATG	1 cut(s)	474
FauI	CCCGC	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	375, 438, 680
FokI	GGATG	3 cut(s)	445, 560, 749
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	375, 438, 680
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	3 cut(s)	375, 438, 680
GsuI	CTGGAG	2 cut(s)	12, 96
HapII	CCGG	1 cut(s)	834
Hin1II	CATG	1 cut(s)	478
HinfI	GANTC	6 cut(s)	102, 445, 576, 602, 749, 842
HpaII	CCGG	1 cut(s)	834
HphI	GGTGA	1 cut(s)	576
Hpy166II	GTNNAC	1 cut(s)	615
Hpy188I	TCNGA	4 cut(s)	96, 186, 493, 754
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	615
HpyAV	CCTTC	3 cut(s)	498, 629, 640
HpyCH4III	ACNGT	2 cut(s)	176, 612
HpyCH4IV	ACGT	2 cut(s)	387, 759
HpyCH4V	TGCA	4 cut(s)	236, 608, 682, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	3 cut(s)	183, 441, 492
HpySE526I	ACGT	2 cut(s)	387, 759
Hsp92II	CATG	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	3 cut(s)	42, 250, 476
Lsp1109I	GCAGC	3 cut(s)	361, 424, 666
LweI	GCATC	3 cut(s)	538, 550, 727
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	2 cut(s)	387, 759
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	3 cut(s)	213, 337, 441
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	184, 302
MluCI	AATT	4 cut(s)	18, 62, 84, 351
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	82, 226, 241
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	5 cut(s)	206, 363, 404, 648, 815
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	834
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	827
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	2 cut(s)	252, 456
NspV	TTCGAA	1 cut(s)	633
PctI	GAATGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	5 cut(s)	102, 445, 576, 749, 842
PkrI	GCNGC	3 cut(s)	376, 439, 681
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	388
Psp124BI	GAGCTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	252, 456
PstI	CTGCAG	1 cut(s)	684
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	5 cut(s)	206, 363, 404, 648, 815
SatI	GCNGC	3 cut(s)	375, 438, 680
Sau3AI	GATC	1 cut(s)	454
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	294
SduI	GDGCHC	2 cut(s)	184, 302
SfaNI	GCATC	3 cut(s)	538, 550, 727
SfcI	CTRYAG	1 cut(s)	680
SfuI	TTCGAA	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	301, 851
SmoI	CTYRAG	2 cut(s)	301, 851
SnaBI	TACGTA	1 cut(s)	388
Sse9I	AATT	4 cut(s)	18, 62, 84, 351
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	729
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	176, 612
TaiI	ACGT	2 cut(s)	390, 762
TaqI	TCGA	1 cut(s)	633
TasI	AATT	4 cut(s)	18, 62, 84, 351
TfiI	GAWTC	5 cut(s)	102, 445, 576, 749, 842
Tru1I	TTAA	5 cut(s)	206, 363, 404, 648, 815
Tru9I	TTAA	5 cut(s)	206, 363, 404, 648, 815
TscAI	CASTG	1 cut(s)	615
TseI	GCWGC	3 cut(s)	374, 437, 679
TspDTI	ATGAA	2 cut(s)	297, 652
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.