Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000638.1

Orthogroup ID

OG0012368

Physical Location & Seq

Genomic Coordinates Forward (+)

120543 .. 122993

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000638.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atgttttctgtagatagtatacagaacgaaatgagcactgaatacatagaggagcctgctaccaaagtgagatttcaaacatctttgagcttgcctgggtgcttgagttcattggcattgcttggaactggatacagggaaaaagtctttgcaattattggcgttaaagtatatgctgcgggattatacgtaaaccagtctatcttaaataacttgaatgcctggaaaggaagatcagctgctgagattcagagggatccatccttgttcagctccatttttcaatctccttttgagaaatcattacagattattctggttagagatgttgatgggaaaacattctggaatgccttgaatgatgccatctctccaagaatcaaatcacccacttctgttgatgagttcgcactgtccacattccgcagtacctttgaaaggcaaccccttaaaaagggaacattcatatttttgacttggccgcagacttccaaaatgcttgtttctatctcatctaatgggcttccgtctagtgtggatgctacaatagaatcagaaaacgtgagttcggcactttttgatgtgttctttggagatactccagtttctccccccttaaaggcttctgttgcaactggattggaatcattcctcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone Chalcone_3

Protein Analysis

219

Amino Acids

24.04

Weight (kDa)

5.6

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53520
fragaria_vesca	FvH4_3g17350
malus_domestica	MD03G1252100.v1.1 MD11G1273600.v1.1
prunus_persica	Prupe.4G153500_v2.0.a1
pyrus_communis	pycom03g20010 pycom11g24130
rosa_chinensis	RchiOBHm_Chr5g0028871
rosa_laevigata	RLG00000033121
rosa_multiflora	Rmu_sc0000638.1_g000037 Rmu_sc0005178.1_g000013
rosa_roxburghii	Rroxscaffold_1G00051010
rosa_rugosa	Rorug05G0111100 Rorug05G0111100
rosa_samantha	Rh5AG203400 Rh5BG201500 Rh5CG222500 Rh5DG205100
rosa_wichuraiana	Rw5G018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	3 cut(s)	179, 424, 482
AclWI	GGATC	2 cut(s)	251, 264
AcoI	YGGCCR	1 cut(s)	479
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	3 cut(s)	438, 454, 619
AgsI	TTSAA	5 cut(s)	77, 217, 284, 358, 437
AjnI	CCWGG	2 cut(s)	94, 221
AluBI	AGCT	3 cut(s)	90, 239, 273
AluI	AGCT	3 cut(s)	90, 239, 273
Alw21I	GWGCWC	1 cut(s)	38
AlwI	GGATC	2 cut(s)	251, 264
AlwNI	CAGNNNCTG	1 cut(s)	242
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	2 cut(s)	176, 239
Asp700I	GAANNNNTTC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	378
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BamHI	GGATCC	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	163, 226
BccI	CCATC	3 cut(s)	268, 326, 374
BciT130I	CCWGG	2 cut(s)	96, 223
BciVI	GTATCC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	125
BisI	GCNGC	3 cut(s)	177, 240, 482
BlsI	GCNGC	3 cut(s)	178, 241, 483
Bme1390I	CCNGG	2 cut(s)	96, 223
BmiI	GGNNCC	2 cut(s)	54, 258
BmrFI	CCNGG	2 cut(s)	96, 223
BmsI	GCATC	2 cut(s)	352, 529
BpmI	CTGGAG	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	124, 638
BsaAI	YACGTR	1 cut(s)	190
BsaBI	GATNNNNATC	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	3 cut(s)	438, 454, 619
Bse1I	ACTGG	4 cut(s)	133, 196, 602, 640
Bse3DI	GCAATG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	643
BseBI	CCWGG	2 cut(s)	96, 223
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	2 cut(s)	260, 544
BseJI	GATNNNNATC	1 cut(s)	643
BseLI	CCNNNNNNNGG	3 cut(s)	438, 454, 619
BseMI	GCAATG	1 cut(s)	116
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	4 cut(s)	133, 196, 602, 640
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	163, 226
BshFI	GGCC	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	38
BslI	CCNNNNNNNGG	3 cut(s)	438, 454, 619
BsmI	GAATGC	2 cut(s)	223, 355
BsnI	GGCC	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	233, 256
BspACI	CCGC	3 cut(s)	179, 424, 482
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	54, 258
BspPI	GGATC	2 cut(s)	251, 264
BsrDI	GCAATG	1 cut(s)	116
BsrI	ACTGG	4 cut(s)	133, 196, 602, 640
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	233, 256
BssNAI	GTATAC	1 cut(s)	20
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	96, 223
Bst4CI	ACNGT	1 cut(s)	414
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	57, 92
BstDEI	CTNAG	1 cut(s)	243
BstENI	CCTNNNNNAGG	2 cut(s)	436, 452
BstF5I	GGATG	2 cut(s)	260, 544
BstKTI	GATC	2 cut(s)	236, 259
BstMBI	GATC	2 cut(s)	233, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	629
BstNI	CCWGG	2 cut(s)	96, 223
BstSCI	CCNGG	2 cut(s)	94, 221
BstSFI	CTRYAG	1 cut(s)	9
BstSNI	TACGTA	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	163, 226
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZ17I	GTATAC	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	260, 544
BtsIMutI	CAGTG	2 cut(s)	36, 410
Cac8I	GCNNGC	2 cut(s)	57, 92
CaiI	CAGNNNCTG	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	429
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviJI	RGCY	7 cut(s)	55, 90, 239, 273, 481, 523, 623
CviKI_1	RGCY	7 cut(s)	55, 90, 239, 273, 481, 523, 623
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	235, 258
DpnII	GATC	2 cut(s)	233, 256
EaeI	YGGCCR	1 cut(s)	479
Eco105I	TACGTA	1 cut(s)	190
EcoNI	CCTNNNNNAGG	2 cut(s)	436, 452
EcoRII	CCWGG	2 cut(s)	94, 221
FaiI	YATR	6 cut(s)	20, 47, 172, 174, 187, 467
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	3 cut(s)	177, 240, 482
FokI	GGATG	2 cut(s)	247, 551
Fsp4HI	GCNGC	3 cut(s)	177, 240, 482
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	3 cut(s)	177, 240, 482
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	481
HinfI	GANTC	4 cut(s)	247, 378, 551, 644
HphI	GGTGA	1 cut(s)	378
Hpy166II	GTNNAC	3 cut(s)	20, 193, 417
Hpy188I	TCNGA	2 cut(s)	252, 556
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	3 cut(s)	20, 193, 417
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	2 cut(s)	189, 561
HpyCH4V	TGCA	2 cut(s)	152, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	629
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	2 cut(s)	189, 561
Kzo9I	GATC	2 cut(s)	233, 256
LmnI	GCTCC	2 cut(s)	52, 278
Lsp1109I	GCAGC	2 cut(s)	163, 226
LweI	GCATC	2 cut(s)	352, 529
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	2 cut(s)	189, 561
MalI	GATC	2 cut(s)	235, 258
MboI	GATC	2 cut(s)	233, 256
MboII	GAAGA	1 cut(s)	243
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	153
MnlI	CCTC	2 cut(s)	43, 246
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	165, 206, 450, 617
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	96, 223
Mva1269I	GAATGC	2 cut(s)	223, 355
MvaI	CCWGG	2 cut(s)	96, 223
MwoI	GCNNNNNNNGC	1 cut(s)	629
NdeII	GATC	2 cut(s)	233, 256
NlaIV	GGNNCC	2 cut(s)	54, 258
PctI	GAATGC	2 cut(s)	223, 355
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	247, 378, 551, 644
PkrI	GCNGC	3 cut(s)	178, 241, 483
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	94, 221
PspGI	CCWGG	2 cut(s)	94, 221
PspN4I	GGNNCC	2 cut(s)	54, 258
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
SaqAI	TTAA	4 cut(s)	165, 206, 450, 617
SatI	GCNGC	3 cut(s)	177, 240, 482
Sau3AI	GATC	2 cut(s)	233, 256
ScrFI	CCNGG	2 cut(s)	96, 223
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	92, 192, 241, 275, 434, 564
SfaNI	GCATC	2 cut(s)	352, 529
SfcI	CTRYAG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	103, 653
SmoI	CTYRAG	2 cut(s)	103, 653
SnaBI	TACGTA	1 cut(s)	190
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	3 cut(s)	179, 424, 482
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	94, 221
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	2 cut(s)	192, 564
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	4 cut(s)	247, 378, 551, 644
Tru1I	TTAA	4 cut(s)	165, 206, 450, 617
Tru9I	TTAA	4 cut(s)	165, 206, 450, 617
TscAI	CASTG	2 cut(s)	43, 417
TseI	GCWGC	2 cut(s)	176, 239
TspDTI	ATGAA	2 cut(s)	99, 454
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	2 cut(s)	43, 417
XagI	CCTNNNNNAGG	2 cut(s)	436, 452
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.