AT1G53660

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004974
Physical Location & Seq
Forward (+)
20033885 .. 20036189
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53660.4

Sequence Viewer

Length: 999 bp
ATGGCGGATCGAAGTCGGATCAGAGGCTTTCTTAGAGAAGAACATGTGACGTATGCTTCCATTCTTCTCTACATCACTCTCTCTAGCGGTCAAATCTTCTTCAATAAGTGGGTATTGTCATCTAAGGAAATAAACTTCCCTTATCCACTTGGATTGACATTACTTCACATGACTTTTTCCTCTGTTTTGTGTTTTCTCCTCACGAAGGTTTTTAAGGTCATGAAGGTTGAGGAAGGAATGACATTAGAAATATATGTTACATCAGTTATTCCAATAGGTGCAATGTTTGCAATGACTCTATGGTTAGGAAACACTGCTTATCTCTACATAACTGTTGCATTTTCCCAAATGTTGAAAGCCATCATGCCTGTTGCTGTGTTTATACTTGGAGTTTGTGTTGGGCTTGAAATAATGAGCTGCAAGATGCTTTTGATAATGTCAGTCATAAGTTTTGGCGTTTTAGTCTCGTCTTATGGTGAATTAAACATCAACTGGGTTGGAGTTGTTTACCAAATGGGTGGTATTGTTTCAGAAGCCTTGAGGCTAATCTTAATGGAAATTCTTGTTAAGAGGAAAGGCATCAAATTAAATCCACTCTCTCTTATGTACTACATGAGCCCATGCAGCGCGATTTGCTTGTTCATACCATGGATATTTCTTGAGAAGTCGAAGATGGATACATGGAACTTTCATGTTCTTGTCTTGAGTCTTAATTCGCTATGTACATTTGCTCTCAATTTGTCGGTTTTTCTTGTGATATCTCGAACAAGTGCTCTTACTATCCGAATTGCTGGCGTGGTTAAAGATTGGTTGGTTGTTTTGGTCTCAGCTCTTCTCTTTGCCGAGACAAAACTCACAATCATCAATCTCTTTGGTTATGCCGTTGCCATCGTTGGTGTAGCTACGTATAACAACCATAAGCCAAAGAACGGTGAAAGCATAACGTTGGTTTCTCAATCTCCGAAAAACTCCGACAAGAAACCCGATGGCCCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

332

Amino Acids

37.01

Weight (kDa)

9.21

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 12 - 270 4.4e-21 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 629
AciI CCGC 2 cut(s) 5, 87
AclI AACGTT 1 cut(s) 944
AclWI GGATC 2 cut(s) 15, 26
AcsI RAATTY 1 cut(s) 558
AfaI GTAC 2 cut(s) 608, 724
AfiI CCNNNNNNNGG 2 cut(s) 205, 929
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 3 cut(s) 103, 355, 407
AluBI AGCT 3 cut(s) 417, 830, 902
AluI AGCT 3 cut(s) 417, 830, 902
Alw21I GWGCWC 1 cut(s) 775
Alw26I GTCTC 3 cut(s) 469, 829, 839
AlwI GGATC 2 cut(s) 15, 26
AoxI GGCC 1 cut(s) 988
ApeKI GCWGC 2 cut(s) 417, 624
ApoI RAATTY 1 cut(s) 558
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 989
AsuHPI GGTGA 2 cut(s) 488, 944
BanII GRGCYC 1 cut(s) 620
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 2 cut(s) 404, 636
BccI CCATC 4 cut(s) 368, 667, 896, 980
BceAI ACGGC 1 cut(s) 866
BciVI GTATCC 1 cut(s) 670
BcoDI GTCTC 3 cut(s) 469, 829, 839
BfaI CTAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 2 cut(s) 418, 625
BlsI GCNGC 2 cut(s) 419, 626
BmgT120I GGNCC 1 cut(s) 989
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 414, 588
BmuI ACTGGG 1 cut(s) 502
BpuEI CTTGAG 3 cut(s) 559, 680, 724
BsaAI YACGTR 1 cut(s) 906
BsaI GGTCTC 1 cut(s) 829
BsaJI CCNNGG 1 cut(s) 647
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 929
Bse1I ACTGG 1 cut(s) 497
Bse3DI GCAATG 2 cut(s) 288, 297
BseDI CCNNGG 1 cut(s) 647
BseLI CCNNNNNNNGG 2 cut(s) 205, 929
BseMI GCAATG 2 cut(s) 288, 297
BseMII CTCAG 1 cut(s) 840
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 404, 636
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 990
BsiHKAI GWGCWC 1 cut(s) 775
BslI CCNNNNNNNGG 2 cut(s) 205, 929
BsmAI GTCTC 3 cut(s) 469, 829, 839
BsnI GGCC 1 cut(s) 990
Bso31I GGTCTC 1 cut(s) 829
Bsp1286I GDGCHC 2 cut(s) 620, 775
Bsp1407I TGTACA 1 cut(s) 722
Bsp143I GATC 2 cut(s) 7, 18
Bsp19I CCATGG 1 cut(s) 647
BspACI CCGC 2 cut(s) 5, 87
BspANI GGCC 1 cut(s) 990
BspCNI CTCAG 1 cut(s) 839
BspFNI CGCG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 219
BspPI GGATC 2 cut(s) 15, 26
BspQI GCTCTTC 1 cut(s) 837
BspTNI GGTCTC 1 cut(s) 829
BsrDI GCAATG 2 cut(s) 288, 297
BsrGI TGTACA 1 cut(s) 722
BsrI ACTGG 1 cut(s) 497
BssECI CCNNGG 1 cut(s) 647
BssMI GATC 2 cut(s) 7, 18
BssT1I CCWWGG 1 cut(s) 647
Bst4CI ACNGT 2 cut(s) 334, 932
Bst6I CTCTTC 1 cut(s) 837
BstAPI GCANNNNNTGC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 722
BstBAI YACGTR 1 cut(s) 906
BstC8I GCNNGC 1 cut(s) 793
BstDEI CTNAG 3 cut(s) 32, 123, 826
BstDSI CCRYGG 1 cut(s) 647
BstENI CCTNNNNNAGG 1 cut(s) 203
BstFNI CGCG 1 cut(s) 629
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 2 cut(s) 10, 21
BstMAI GTCTC 3 cut(s) 469, 829, 839
BstMBI GATC 2 cut(s) 7, 18
BstMWI GCNNNNNNNGC 3 cut(s) 287, 624, 633
BstNSI RCATGY 1 cut(s) 47
BstSNI TACGTA 1 cut(s) 906
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 2 cut(s) 404, 636
BstXI CCANNNNNNTGG 1 cut(s) 518
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 1 cut(s) 990
BtgI CCRYGG 1 cut(s) 647
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 793
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 989
Csp6I GTAC 2 cut(s) 607, 723
CspCI CAANNNNNGTGG 2 cut(s) 135, 170
CviAII CATG 9 cut(s) 44, 169, 220, 364, 613, 621, 648, 681, 692
CviQI GTAC 2 cut(s) 607, 723
DdeI CTNAG 3 cut(s) 32, 123, 826
DpnI GATC 2 cut(s) 9, 20
DpnII GATC 2 cut(s) 7, 18
Eam1104I CTCTTC 1 cut(s) 837
EarI CTCTTC 1 cut(s) 837
EciI GGCGGA 1 cut(s) 20
Eco105I TACGTA 1 cut(s) 906
Eco130I CCWWGG 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 620
Eco31I GGTCTC 1 cut(s) 829
Eco32I GATATC 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRV GATATC 1 cut(s) 759
EcoT14I CCWWGG 1 cut(s) 647
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 9 cut(s) 47, 172, 223, 367, 616, 624, 651, 684, 695
FatI CATG 9 cut(s) 43, 168, 219, 363, 612, 620, 647, 680, 691
Fnu4HI GCNGC 2 cut(s) 418, 625
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 2 cut(s) 418, 625
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 628
GluI GCNGC 2 cut(s) 418, 625
HaeIII GGCC 1 cut(s) 990
HhaI GCGC 1 cut(s) 629
Hin1II CATG 9 cut(s) 47, 172, 223, 367, 616, 624, 651, 684, 695
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HinfI GANTC 2 cut(s) 295, 706
HphI GGTGA 2 cut(s) 488, 944
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 6 cut(s) 18, 23, 532, 785, 963, 973
Hpy188III TCNNGA 5 cut(s) 202, 220, 659, 703, 762
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 3 cut(s) 199, 217, 227
HpyCH4III ACNGT 2 cut(s) 334, 932
HpyCH4IV ACGT 3 cut(s) 50, 905, 944
HpyCH4V TGCA 5 cut(s) 281, 290, 338, 420, 624
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 624, 633
HpyF3I CTNAG 3 cut(s) 32, 123, 826
HpySE526I ACGT 3 cut(s) 50, 905, 944
Hsp92II CATG 9 cut(s) 47, 172, 223, 367, 616, 624, 651, 684, 695
HspAI GCGC 1 cut(s) 627
Kzo9I GATC 2 cut(s) 7, 18
LguI GCTCTTC 1 cut(s) 837
LpnPI CCDG 3 cut(s) 381, 478, 777
Lsp1109I GCAGC 2 cut(s) 404, 636
LweI GCATC 2 cut(s) 414, 588
MaeI CTAG 1 cut(s) 84
MaeII ACGT 3 cut(s) 50, 905, 944
MaeIII GTNAC 2 cut(s) 46, 256
MalI GATC 2 cut(s) 9, 20
MboI GATC 2 cut(s) 7, 18
MboII GAAGA 6 cut(s) 50, 56, 88, 91, 682, 824
MhlI GDGCHC 2 cut(s) 620, 775
MluCI AATT 6 cut(s) 479, 558, 584, 712, 736, 786
MlyI GAGTC 2 cut(s) 289, 715
MmeI TCCRAC 2 cut(s) 478, 996
MnlI CCTC 6 cut(s) 17, 190, 209, 223, 534, 564
MseI TTAA 7 cut(s) 213, 482, 551, 567, 587, 711, 801
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 287, 624, 633
NcoI CCATGG 1 cut(s) 647
NdeII GATC 2 cut(s) 7, 18
NlaIII CATG 9 cut(s) 47, 172, 223, 367, 616, 624, 651, 684, 695
NmeAIII GCCGAG 1 cut(s) 868
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 47
PagI TCATGA 1 cut(s) 219
PciI ACATGT 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 837
PkrI GCNGC 2 cut(s) 419, 626
PleI GAGTC 2 cut(s) 289, 714
PpsI GAGTC 2 cut(s) 289, 714
Ppu21I YACGTR 1 cut(s) 906
PscI ACATGT 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 944
PspPI GGNCC 1 cut(s) 989
RsaI GTAC 2 cut(s) 608, 724
RsaNI GTAC 2 cut(s) 607, 723
SapI GCTCTTC 1 cut(s) 837
SaqAI TTAA 7 cut(s) 213, 482, 551, 567, 587, 711, 801
SatI GCNGC 2 cut(s) 418, 625
Sau3AI GATC 2 cut(s) 7, 18
Sau96I GGNCC 1 cut(s) 989
SchI GAGTC 2 cut(s) 289, 715
SduI GDGCHC 2 cut(s) 620, 775
SfaNI GCATC 2 cut(s) 414, 588
SmlI CTYRAG 3 cut(s) 538, 659, 703
SmoI CTYRAG 3 cut(s) 538, 659, 703
SnaBI TACGTA 1 cut(s) 906
Sse9I AATT 6 cut(s) 479, 558, 584, 712, 736, 786
SsiI CCGC 2 cut(s) 5, 87
SspMI CTAG 1 cut(s) 84
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 2 cut(s) 334, 932
TaiI ACGT 3 cut(s) 53, 908, 947
TaqI TCGA 3 cut(s) 10, 668, 763
TasI AATT 6 cut(s) 479, 558, 584, 712, 736, 786
TatI WGTACW 2 cut(s) 606, 722
Tru1I TTAA 7 cut(s) 213, 482, 551, 567, 587, 711, 801
Tru9I TTAA 7 cut(s) 213, 482, 551, 567, 587, 711, 801
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 417, 624
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 236, 631, 680
TspRI CASTG 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 1 cut(s) 558
XceI RCATGY 1 cut(s) 47
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.