Rh5BG191800

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004974
Physical Location & Seq
Reverse (-)
21169693 .. 21175593
5901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG191800.1

Sequence Viewer

Length: 1056 bp
ATGGGACCCATGAAATCACAAATGAATCCGACCGCTGGCAGTGTCCCTCAAAATTCCTTCACGTACTGCTTGACCTTCATTCTCAAATCATTTGGGTTCAGACAGAACACAACACACACACAAAAAATGGCAGATCGGGCGCGTCTTTTCTGCAAGGATGAGGTCCTCACTTACTCTTATCTTCTTCTCTACATCGCTCTCTCCAGCGGTCAGATCTTCTTCAACAAGTGGGTTTTGTCTTCCAAGGAAATCAACTTCCCTTACCCTCTGGGATTGACTCTACTTCACATGATCTTCTCCTCCGTTTTATGCTTTTTACTCACCAAGGTTTTTAAGATTTTGAAGGTTGAGGAAGGGATGACTACAGAAATATACGTGACATCAGTAATGCCAATTGGTGCAATGTTTGCAATGACTCTTTGGCTGGGAAATACTGCCTACATGTATATTTCTGTTGCATTCGCACAGATGTTGAAAGCAATCATGCCCGTAGCTGTGTTTGTTCTTGGAGTAGCTGCAGGGCTTGAGGTAATGAGCTGCAGAATGCTATTGATAATGTCAGTGATAAGTTTTGGCGTTCTGGTGGCTTCTTATGGTGAATTAAATATCAGCTGGATTGGAGTAGTTTATCAAATGGGAGGAGTTGTCGGAGAAGCCTTGAGACTTATTTTTATGGAGATTTTTGTCAAAAGGAAGGGTCTCAAATTAAATCCAATATCTGTTATGTTCTATGTTAGCCCGTGCAGTGCTCTTTGCCTATTCATTCCATGGATATTTTTAGAGAAAACCAAGATGGAAGCAGATGCATCATGGAACTTTCCAATCGTGGTGCTAACACTTAATTCTCTGTGCACCTTTGCCCTCAACTTATCAGTCTTCCTTGTGATTACTCATACAAGTGCTTTGACCATTCGTGTTGCTGGAGTTGTCAAGGACTGGGTGGTTGTCTTAATTTCTGCCCTTCTTTTCGCTGATACAAAGCTGACTCTTATAAATCTAGTCGGATATGCCATTGGTAAGTGTCTGAATGTACACATTTTTGTTTTAAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

351

Amino Acids

39.09

Weight (kDa)

9.12

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 60 - 339 1.5e-20 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
AccII CGCG 1 cut(s) 142
AciI CCGC 2 cut(s) 33, 207
AcsI RAATTY 1 cut(s) 52
AfaI GTAC 2 cut(s) 65, 1032
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 441
AgsI TTSAA 3 cut(s) 223, 343, 475
AluBI AGCT 5 cut(s) 494, 515, 537, 612, 982
AluI AGCT 5 cut(s) 494, 515, 537, 612, 982
Alw21I GWGCWC 2 cut(s) 751, 854
Alw26I GTCTC 2 cut(s) 655, 704
Alw44I GTGCAC 1 cut(s) 850
ApaLI GTGCAC 1 cut(s) 850
ApeKI GCWGC 2 cut(s) 515, 537
ApoI RAATTY 1 cut(s) 52
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 2 cut(s) 5, 163
AsuHPI GGTGA 2 cut(s) 313, 608
AvaII GGWCC 2 cut(s) 5, 163
BaeGI GKGCMC 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 231, 868
Bbv12I GWGCWC 2 cut(s) 751, 854
BbvI GCAGC 2 cut(s) 502, 524
BccI CCATC 1 cut(s) 787
BcoDI GTCTC 2 cut(s) 655, 704
BfaI CTAG 1 cut(s) 998
BfmI CTRYAG 3 cut(s) 363, 516, 538
BglII AGATCT 1 cut(s) 213
BisI GCNGC 2 cut(s) 516, 538
BlsI GCNGC 2 cut(s) 517, 539
Bme18I GGWCC 2 cut(s) 5, 163
BmgT120I GGNCC 2 cut(s) 5, 163
BmiI GGNNCC 2 cut(s) 6, 7
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 2 cut(s) 793, 815
BmuI ACTGGG 1 cut(s) 946
BpiI GAAGAC 2 cut(s) 231, 868
BpmI CTGGAG 2 cut(s) 187, 942
BpuEI CTTGAG 2 cut(s) 545, 679
BsaAI YACGTR 2 cut(s) 63, 376
BsaI GGTCTC 1 cut(s) 704
BsaJI CCNNGG 3 cut(s) 243, 324, 767
BsaXI ACNNNNNCTCC 2 cut(s) 630, 660
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 941
Bse3DI GCAATG 2 cut(s) 408, 417
BseDI CCNNGG 3 cut(s) 243, 324, 767
BseGI GGATG 2 cut(s) 163, 363
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 408, 417
BseNI ACTGG 1 cut(s) 941
BseRI GAGGAG 2 cut(s) 289, 654
BseSI GKGCMC 1 cut(s) 854
BseXI GCAGC 2 cut(s) 502, 524
BseYI CCCAGC 1 cut(s) 424
BsgI GTGCAG 1 cut(s) 763
Bsh1236I CGCG 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 751, 854
BslFI GGGAC 2 cut(s) 18, 29
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 655, 704
BsmFI GGGAC 2 cut(s) 18, 29
BsmI GAATGC 2 cut(s) 458, 549
Bso31I GGTCTC 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 751, 854
Bsp1407I TGTACA 1 cut(s) 1030
Bsp143I GATC 3 cut(s) 133, 213, 291
Bsp19I CCATGG 1 cut(s) 767
BspACI CCGC 2 cut(s) 33, 207
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 6, 7
BspMAI CTGCAG 2 cut(s) 520, 542
BspTNI GGTCTC 1 cut(s) 704
BsrDI GCAATG 2 cut(s) 408, 417
BsrGI TGTACA 1 cut(s) 1030
BsrI ACTGG 1 cut(s) 941
BssECI CCNNGG 3 cut(s) 243, 324, 767
BssMI GATC 3 cut(s) 133, 213, 291
BssT1I CCWWGG 3 cut(s) 243, 324, 767
BstAPI GCANNNNNTGC 1 cut(s) 407
BstAUI TGTACA 1 cut(s) 1030
BstBAI YACGTR 2 cut(s) 63, 376
BstC8I GCNNGC 1 cut(s) 37
BstDSI CCRYGG 1 cut(s) 767
BstF5I GGATG 2 cut(s) 163, 363
BstFNI CGCG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 3 cut(s) 136, 216, 294
BstMAI GTCTC 2 cut(s) 655, 704
BstMBI GATC 3 cut(s) 133, 213, 291
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 137, 407
BstNSI RCATGY 1 cut(s) 445
BstSFI CTRYAG 3 cut(s) 363, 516, 538
BstSLI GKGCMC 1 cut(s) 854
BstUI CGCG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 502, 524
BstV2I GAAGAC 2 cut(s) 231, 868
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 767
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 2 cut(s) 163, 363
BtsI GCAGTG 2 cut(s) 46, 751
BtsIMutI CAGTG 3 cut(s) 46, 567, 751
Cac8I GCNNGC 1 cut(s) 37
CfoI GCGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 5, 163
CseI GACGC 1 cut(s) 131
Csp6I GTAC 2 cut(s) 64, 1031
CviAII CATG 6 cut(s) 10, 289, 442, 484, 768, 810
CviQI GTAC 2 cut(s) 64, 1031
DpnI GATC 3 cut(s) 135, 215, 293
DpnII GATC 3 cut(s) 133, 213, 291
DraI TTTAAA 1 cut(s) 1047
Eco130I CCWWGG 3 cut(s) 243, 324, 767
Eco31I GGTCTC 1 cut(s) 704
Eco47I GGWCC 2 cut(s) 5, 163
EcoO109I RGGNCCY 2 cut(s) 5, 163
EcoT14I CCWWGG 3 cut(s) 243, 324, 767
EcoT22I ATGCAT 1 cut(s) 808
ErhI CCWWGG 3 cut(s) 243, 324, 767
FaeI CATG 6 cut(s) 13, 292, 445, 487, 771, 813
FaqI GGGAC 2 cut(s) 18, 29
FatI CATG 6 cut(s) 9, 288, 441, 483, 767, 809
Fnu4HI GCNGC 2 cut(s) 516, 538
FokI GGATG 2 cut(s) 170, 370
Fsp4HI GCNGC 2 cut(s) 516, 538
FspBI CTAG 1 cut(s) 998
GlaI GCGC 1 cut(s) 141
GluI GCNGC 2 cut(s) 516, 538
GsaI CCCAGC 1 cut(s) 428
GsuI CTGGAG 2 cut(s) 187, 942
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 142
Hin1II CATG 6 cut(s) 13, 292, 445, 487, 771, 813
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HinfI GANTC 4 cut(s) 25, 277, 415, 985
HphI GGTGA 2 cut(s) 313, 608
Hpy166II GTNNAC 2 cut(s) 852, 1033
Hpy188I TCNGA 6 cut(s) 30, 101, 213, 650, 1004, 1026
Hpy8I GTNNAC 2 cut(s) 852, 1033
HpyAV CCTTC 6 cut(s) 67, 85, 337, 347, 688, 971
HpyCH4IV ACGT 2 cut(s) 62, 375
HpyCH4V TGCA 9 cut(s) 153, 401, 410, 458, 518, 540, 744, 806, 852
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 407
HpySE526I ACGT 2 cut(s) 62, 375
Hsp92II CATG 6 cut(s) 13, 292, 445, 487, 771, 813
HspAI GCGC 1 cut(s) 140
KflI GGGWCCC 1 cut(s) 5
Kzo9I GATC 3 cut(s) 133, 213, 291
LpnPI CCDG 9 cut(s) 21, 217, 254, 410, 504, 566, 598, 906, 922
Lsp1109I GCAGC 2 cut(s) 502, 524
LweI GCATC 2 cut(s) 793, 815
MaeI CTAG 1 cut(s) 998
MaeII ACGT 2 cut(s) 62, 375
MaeIII GTNAC 1 cut(s) 376
MalI GATC 3 cut(s) 135, 215, 293
MboI GATC 3 cut(s) 133, 213, 291
MboII GAAGA 7 cut(s) 173, 176, 208, 211, 231, 286, 868
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 751, 854
MluCI AATT 6 cut(s) 52, 393, 599, 704, 841, 951
MlyI GAGTC 3 cut(s) 271, 409, 979
MmeI TCCRAC 3 cut(s) 53, 628, 982
MnlI CCTC 9 cut(s) 57, 154, 176, 276, 310, 343, 520, 632, 872
Mph1103I ATGCAT 1 cut(s) 808
MseI TTAA 6 cut(s) 333, 602, 707, 840, 950, 1046
MslI CAYNNNNRTG 1 cut(s) 897
MspA1I CMGCKG 3 cut(s) 35, 207, 612
MunI CAATTG 1 cut(s) 393
Mva1269I GAATGC 2 cut(s) 458, 549
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 2 cut(s) 137, 407
NcoI CCATGG 1 cut(s) 767
NdeII GATC 3 cut(s) 133, 213, 291
NlaIII CATG 6 cut(s) 13, 292, 445, 487, 771, 813
NlaIV GGNNCC 2 cut(s) 6, 7
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 445
PciI ACATGT 1 cut(s) 441
PctI GAATGC 2 cut(s) 458, 549
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 517, 539
PleI GAGTC 3 cut(s) 271, 409, 979
PpsI GAGTC 3 cut(s) 271, 409, 979
Ppu21I YACGTR 2 cut(s) 63, 376
PpuMI RGGWCCY 2 cut(s) 5, 163
PscI ACATGT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 992
Psp5II RGGWCCY 2 cut(s) 5, 163
PspFI CCCAGC 1 cut(s) 424
PspN4I GGNNCC 2 cut(s) 6, 7
PspPI GGNCC 2 cut(s) 5, 163
PspPPI RGGWCCY 2 cut(s) 5, 163
PstI CTGCAG 2 cut(s) 520, 542
PsuI RGATCY 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 2 cut(s) 65, 1032
RsaNI GTAC 2 cut(s) 64, 1031
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 6 cut(s) 333, 602, 707, 840, 950, 1046
SatI GCNGC 2 cut(s) 516, 538
Sau3AI GATC 3 cut(s) 133, 213, 291
Sau96I GGNCC 2 cut(s) 5, 163
SchI GAGTC 3 cut(s) 271, 409, 979
SduI GDGCHC 2 cut(s) 751, 854
SfaNI GCATC 2 cut(s) 793, 815
SfcI CTRYAG 3 cut(s) 363, 516, 538
SinI GGWCC 2 cut(s) 5, 163
SmiMI CAYNNNNRTG 1 cut(s) 897
SmlI CTYRAG 2 cut(s) 524, 658
SmoI CTYRAG 2 cut(s) 524, 658
Sse9I AATT 6 cut(s) 52, 393, 599, 704, 841, 951
SsiI CCGC 2 cut(s) 33, 207
SspMI CTAG 1 cut(s) 998
StyI CCWWGG 3 cut(s) 243, 324, 767
TaiI ACGT 2 cut(s) 65, 378
TasI AATT 6 cut(s) 52, 393, 599, 704, 841, 951
TatI WGTACW 1 cut(s) 1030
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 6 cut(s) 333, 602, 707, 840, 950, 1046
Tru9I TTAA 6 cut(s) 333, 602, 707, 840, 950, 1046
TscAI CASTG 3 cut(s) 46, 567, 751
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 515, 537
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 26, 38, 67, 751
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 46, 567, 751
VneI GTGCAC 1 cut(s) 850
VpaK11BI GGWCC 2 cut(s) 5, 163
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 445
XspI CTAG 1 cut(s) 998
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.