Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004974

Physical Location & Seq

Genomic Coordinates Forward (+)

8818155 .. 8820203

Gene Structure 2049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGTTCATCATCGCCCTCCAATTCTATGCTGCAATGGCCAAGTTTATTACCCTTTGCACTCTTGCAGCCTTTTTCCTCTCTCTCCTTCATGCTCATGCTGCTTCTCCAGGAGATAGTCATACTCTGTCCACGGCAGACACTGCAGAGACTTGGTGTGTCCCCAATCCATCGTTGACCTATAAAAATCTGCAAGAGATAGAAACCTTTGCTTGCAATTATGTGGATTGCTCTTCAATTCACAGTGGGGGTCCATGCTTCAACCCCTTGAACGCCTTTATTCATGCAGCCTTTGCCATGAATGCTTATTATCAGGAGCAACACCAGTGTTTTGGTAACTCTGGACTCATATCTATTACTGATCCAAGCTATGGGAACTGTCATTTTGCAGGTAGAGAAGAGAAGGTTTCCTCTTCAACAGCTCTGAATACATGGTGTGTGGCAAAGCCGGCTGCCACTGACAATTTGCTACAATTGAACATTGACTTCGCTTGTAGTCATGTCAACTGTAGTGTCATTGAACCCGGTGGTGAATGCCAATTACAAGACACTATGATGAACCATGCATCTGTAGACATGAATCTCTTCTACCAATCTTCTGGCAGAACAGATTCGAGTTGTTATTTCAACTCGACTGGCATGAATGTGATTAAAGATCCAAGTTCTGGAAGTTGTGTCTATAACGTTGCTGTCCCTGCGAGTCTCAGAGCAAAGAAGGGGAAATCTAAAGCTTCTGCAACATTTATTGGACTGATGGTGCTGTGTTTGATCATTGGTTGTGTGCTGCTGGCAGGGGTTGTGTATCTTATCCTCAAGCTTCGTCAGACACCCACAACAGCAGCAGCGGTGGAAACTCCCATGTACAGATTGCAGGAGCCAACAGCTGCCACTCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

299

Amino Acids

32.18

Weight (kDa)

5.95

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	51 - 109	1.7e-13	X8 domain
X8	PF07983	144 - 214	2.9e-16	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53660 AT1G53660 AT1G53660 AT1G53660 AT1G53660 AT3G14410
fragaria_vesca	FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500
malus_domestica	MD05G1209500.v1.1 MD10G1195800.v1.1
prunus_persica	Prupe.4G148000_v2.0.a1 Prupe.4G148000_v2.0.a1
pyrus_communis	pycom10g16940
rosa_chinensis	RchiOBHm_Chr5g0027551
rosa_multiflora	Rmu_co8373801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051990
rosa_rugosa	Rorug05G0099700
rosa_samantha	Rh5AG193800 Rh5BG191800 Rh5CG212000 Rh5DG193700
rosa_wichuraiana	Rw5G017670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccB7I	CCANNNNNTGG	2 cut(s)	371, 665
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	1 cut(s)	845
AclI	AACGTT	1 cut(s)	684
AclWI	GGATC	2 cut(s)	356, 650
AcoI	YGGCCR	1 cut(s)	39
AfaI	GTAC	1 cut(s)	863
AfiI	CCNNNNNNNGG	2 cut(s)	371, 665
AgsI	TTSAA	7 cut(s)	237, 262, 271, 417, 478, 521, 628
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	5 cut(s)	369, 422, 731, 817, 884
AluI	AGCT	5 cut(s)	369, 422, 731, 817, 884
Alw26I	GTCTC	2 cut(s)	143, 707
AlwI	GGATC	2 cut(s)	356, 650
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	9 cut(s)	32, 68, 101, 287, 452, 784, 839, 842, 884
Asp700I	GAANNNNTTC	2 cut(s)	584, 610
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	41
BbvI	GCAGC	9 cut(s)	19, 80, 88, 299, 439, 771, 851, 854, 871
BccI	CCATC	2 cut(s)	178, 748
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	768
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	143, 707
BfmI	CTRYAG	3 cut(s)	144, 508, 570
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	9 cut(s)	33, 69, 102, 288, 453, 785, 840, 843, 885
BlsI	GCNGC	9 cut(s)	34, 70, 103, 289, 454, 786, 841, 844, 886
Bme1390I	CCNGG	2 cut(s)	111, 525
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	252, 876
BmrFI	CCNGG	2 cut(s)	111, 525
BmsI	GCATC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	525
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 665
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	325, 640
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	371, 665
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	2 cut(s)	325, 640
BseXI	GCAGC	9 cut(s)	19, 80, 88, 299, 439, 771, 851, 854, 871
BshFI	GGCC	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	449, 525
BslFI	GGGAC	2 cut(s)	146, 677
BslI	CCNNNNNNNGG	2 cut(s)	371, 665
BsmAI	GTCTC	2 cut(s)	143, 707
BsmFI	GGGAC	2 cut(s)	146, 677
BsmI	GAATGC	2 cut(s)	307, 539
BsnI	GGCC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	361, 655, 768
BspACI	CCGC	1 cut(s)	845
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	717
BspLI	GGNNCC	2 cut(s)	252, 876
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	356, 650
BspQI	GCTCTTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	325, 640
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	3 cut(s)	361, 655, 768
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	3 cut(s)	245, 380, 509
Bst6I	CTCTTC	5 cut(s)	238, 393, 418, 590, 897
BstAPI	GCANNNNNTGC	2 cut(s)	143, 293
BstAUI	TGTACA	1 cut(s)	861
BstC8I	GCNNGC	3 cut(s)	214, 450, 789
BstDEI	CTNAG	2 cut(s)	704, 897
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	364, 658, 771
BstMAI	GTCTC	2 cut(s)	143, 707
BstMBI	GATC	3 cut(s)	361, 655, 768
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 101, 143, 293, 302, 449, 695
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	109, 523
BstSFI	CTRYAG	3 cut(s)	144, 508, 570
BstV1I	GCAGC	9 cut(s)	19, 80, 88, 299, 439, 771, 851, 854, 871
BstX2I	RGATCY	1 cut(s)	655
BstXI	CCANNNNNNTGG	2 cut(s)	332, 599
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	4 cut(s)	141, 250, 332, 456
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	3 cut(s)	214, 450, 789
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	862
CviQI	GTAC	1 cut(s)	862
DdeI	CTNAG	2 cut(s)	704, 897
DpnI	GATC	3 cut(s)	363, 657, 770
DpnII	GATC	3 cut(s)	361, 655, 768
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	5 cut(s)	238, 393, 418, 590, 897
EarI	CTCTTC	5 cut(s)	238, 393, 418, 590, 897
Eco47I	GGWCC	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	568
FaqI	GGGAC	2 cut(s)	146, 677
FbaI	TGATCA	1 cut(s)	768
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	9 cut(s)	33, 69, 102, 288, 453, 785, 840, 843, 885
Fsp4HI	GCNGC	9 cut(s)	33, 69, 102, 288, 453, 785, 840, 843, 885
GluI	GCNGC	9 cut(s)	33, 69, 102, 288, 453, 785, 840, 843, 885
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	449, 525
HincII	GTYRAC	2 cut(s)	177, 505
HindII	GTYRAC	2 cut(s)	177, 505
HindIII	AAGCTT	2 cut(s)	729, 815
HinfI	GANTC	4 cut(s)	345, 580, 611, 700
HpaII	CCGG	2 cut(s)	449, 525
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	4 cut(s)	132, 177, 505, 574
Hpy188I	TCNGA	3 cut(s)	426, 707, 825
Hpy188III	TCNNGA	3 cut(s)	314, 342, 666
Hpy8I	GTNNAC	4 cut(s)	132, 177, 505, 574
HpyAV	CCTTC	3 cut(s)	98, 397, 709
HpyCH4III	ACNGT	3 cut(s)	245, 380, 509
HpyCH4IV	ACGT	1 cut(s)	684
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 101, 143, 293, 302, 449, 695
HpyF3I	CTNAG	2 cut(s)	704, 897
HpySE526I	ACGT	1 cut(s)	684
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	768
Kzo9I	GATC	3 cut(s)	361, 655, 768
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	316, 874
Lsp1109I	GCAGC	9 cut(s)	19, 80, 88, 299, 439, 771, 851, 854, 871
LweI	GCATC	1 cut(s)	575
MaeII	ACGT	1 cut(s)	684
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	3 cut(s)	363, 657, 770
MboI	GATC	3 cut(s)	361, 655, 768
MboII	GAAGA	6 cut(s)	225, 405, 410, 577, 588, 884
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	1 cut(s)	655
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	23, 217, 237, 463, 473, 539
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	339, 709
MnlI	CCTC	4 cut(s)	29, 89, 421, 821
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	568
MroNI	GCCGGC	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	584, 610
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	3 cut(s)	96, 554, 644
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	2 cut(s)	845, 884
MspI	CCGG	2 cut(s)	449, 525
MspR9I	CCNGG	2 cut(s)	111, 525
MunI	CAATTG	1 cut(s)	473
Mva1269I	GAATGC	2 cut(s)	307, 539
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	7 cut(s)	38, 101, 143, 293, 302, 449, 695
NaeI	GCCGGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	361, 655, 768
NgoMIV	GCCGGC	1 cut(s)	448
NlaIV	GGNNCC	2 cut(s)	252, 876
NsiI	ATGCAT	1 cut(s)	568
PciSI	GCTCTTC	1 cut(s)	238
PctI	GAATGC	2 cut(s)	307, 539
PdiI	GCCGGC	1 cut(s)	450
PdmI	GAANNNNTTC	2 cut(s)	584, 610
PfeI	GAWTC	2 cut(s)	580, 611
PflMI	CCANNNNNTGG	2 cut(s)	371, 665
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	9 cut(s)	34, 70, 103, 289, 454, 786, 841, 844, 886
PleI	GAGTC	2 cut(s)	339, 708
PpsI	GAGTC	2 cut(s)	339, 708
Psp1406I	AACGTT	1 cut(s)	684
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	252, 876
PspPI	GGNCC	1 cut(s)	251
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	1 cut(s)	863
RsaNI	GTAC	1 cut(s)	862
RseI	CAYNNNNRTG	3 cut(s)	96, 554, 644
SapI	GCTCTTC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	9 cut(s)	33, 69, 102, 288, 453, 785, 840, 843, 885
Sau3AI	GATC	3 cut(s)	361, 655, 768
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	2 cut(s)	339, 709
ScrFI	CCNGG	2 cut(s)	111, 525
SfaNI	GCATC	1 cut(s)	575
SfcI	CTRYAG	3 cut(s)	144, 508, 570
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	3 cut(s)	96, 554, 644
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	6 cut(s)	23, 217, 237, 463, 473, 539
SsiI	CCGC	1 cut(s)	845
StyD4I	CCNGG	2 cut(s)	109, 523
TaaI	ACNGT	3 cut(s)	245, 380, 509
TaiI	ACGT	1 cut(s)	687
TaqI	TCGA	2 cut(s)	614, 632
TasI	AATT	6 cut(s)	23, 217, 237, 463, 473, 539
TatI	WGTACW	1 cut(s)	861
TfiI	GAWTC	2 cut(s)	580, 611
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	4 cut(s)	148, 250, 332, 463
TseI	GCWGC	9 cut(s)	32, 68, 101, 287, 452, 784, 839, 842, 884
TspDTI	ATGAA	6 cut(s)	80, 272, 314, 572, 593, 656
TspRI	CASTG	4 cut(s)	148, 250, 332, 463
Van91I	CCANNNNNTGG	2 cut(s)	371, 665
VpaK11BI	GGWCC	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	2 cut(s)	584, 610
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.