Rh5DG193700

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004974
Physical Location & Seq
Reverse (-)
21536961 .. 21543651
6691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG193700.1

Sequence Viewer

Length: 849 bp
ATGATCTTCTCCTCCGTTTTATGCTTTTTACTCACCAAGGTTTTTAAGATTTTGAAGGTTGAGGAAGGGATGACTACAGAAATATACGTGACATCAGTAATGCCAATTGGTGCAATGTTTGCAATGACTCTTTGGCTGGGAAATACTGCCTACATGTATATTTCTGTTGCATTCGCACAGATGTTGAAAGCAATCATGCCCGTAGCTGTTTTTGTTCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTGCAGAATGCTATTGATAATGTCAGTGATAAGTTTTGGCGTTCTGGTGGCTTCTTATGGTGAACTAAATATCAGCTGGATTGGAGTAGTTTATCAAATGGGAGGAGTTGTCGGAGAAGCCTTGAGACTTATTTTTATGGAGATTTTTGTCAAAAGGAAGGGTCTCAAATTAAATCCAATATCTGTTATGTTCTATGTTAGCCCGTGCAGTGCTCTTTGCCTATTCATTCCATGGATATTTTTAGAGAAAACCAAGATGGAAGCAGATGCATCATGGAACTTTCCAATCGTGGTGCTAACACTTAATTCTCTGTGCACCTTTGCCCTCAACTTATCAGTCTTCCTTGTGATTACTCATACAAGTGCTTTGACCATTCGTGTTGCTGGAGTTGTCAAGGACTGGGTGGTTGTCTTAATTTCTGCCCTTCTTTTCGCTGATACAAAGCTGACTCTTATAAATCTAGTCGGATATGCCATTGCCATAACGGGTGTAGCAGCATACAATAATTTCAAGTTAAAAAAAGAAGCCTCCAGAGTCACCCCTGAAGAATCTGAAAGTTCTCAACCTCTACAGGCAGCCACAACATCAGATTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

282

Amino Acids

30.88

Weight (kDa)

8.53

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 9 - 251 8.4e-20 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AcuI CTGAAG 1 cut(s) 813
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 3 cut(s) 55, 187, 760
AluBI AGCT 5 cut(s) 206, 227, 249, 324, 694
AluI AGCT 5 cut(s) 206, 227, 249, 324, 694
Alw21I GWGCWC 2 cut(s) 463, 566
Alw26I GTCTC 2 cut(s) 367, 416
Alw44I GTGCAC 1 cut(s) 562
ApaLI GTGCAC 1 cut(s) 562
ApeKI GCWGC 4 cut(s) 227, 249, 743, 824
AsuHPI GGTGA 3 cut(s) 25, 320, 778
BaeGI GKGCMC 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 580
Bbv12I GWGCWC 2 cut(s) 463, 566
BbvI GCAGC 4 cut(s) 214, 236, 755, 836
BccI CCATC 1 cut(s) 499
BcoDI GTCTC 2 cut(s) 367, 416
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 4 cut(s) 75, 228, 250, 818
BisI GCNGC 4 cut(s) 228, 250, 744, 825
BlsI GCNGC 4 cut(s) 229, 251, 745, 826
BmrI ACTGGG 1 cut(s) 658
BmsI GCATC 2 cut(s) 505, 527
BmuI ACTGGG 1 cut(s) 658
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 2 cut(s) 654, 763
BpuEI CTTGAG 2 cut(s) 257, 391
BsaAI YACGTR 1 cut(s) 88
BsaI GGTCTC 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 36, 479
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bse1I ACTGG 1 cut(s) 653
Bse3DI GCAATG 3 cut(s) 120, 129, 723
BseDI CCNNGG 2 cut(s) 36, 479
BseGI GGATG 1 cut(s) 75
BseMI GCAATG 3 cut(s) 120, 129, 723
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 4 cut(s) 214, 236, 755, 836
BseYI CCCAGC 1 cut(s) 136
BsgI GTGCAG 1 cut(s) 475
BsiHKAI GWGCWC 2 cut(s) 463, 566
BsmAI GTCTC 2 cut(s) 367, 416
BsmI GAATGC 2 cut(s) 170, 261
Bso31I GGTCTC 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 463, 566
Bsp143I GATC 1 cut(s) 3
Bsp19I CCATGG 1 cut(s) 479
BspMAI CTGCAG 2 cut(s) 232, 254
BspTNI GGTCTC 1 cut(s) 416
BsrDI GCAATG 3 cut(s) 120, 129, 723
BsrI ACTGG 1 cut(s) 653
BssECI CCNNGG 2 cut(s) 36, 479
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 2 cut(s) 36, 479
BstAPI GCANNNNNTGC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 2 cut(s) 367, 416
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 4 cut(s) 75, 228, 250, 818
BstSLI GKGCMC 1 cut(s) 566
BstV1I GCAGC 4 cut(s) 214, 236, 755, 836
BstV2I GAAGAC 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 1 cut(s) 75
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 279, 463
CviAII CATG 4 cut(s) 154, 196, 480, 522
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 36, 479
Eco31I GGTCTC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 813
EcoT14I CCWWGG 2 cut(s) 36, 479
EcoT22I ATGCAT 1 cut(s) 520
ErhI CCWWGG 2 cut(s) 36, 479
FaeI CATG 4 cut(s) 157, 199, 483, 525
FatI CATG 4 cut(s) 153, 195, 479, 521
Fnu4HI GCNGC 4 cut(s) 228, 250, 744, 825
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 4 cut(s) 228, 250, 744, 825
FspBI CTAG 1 cut(s) 710
GluI GCNGC 4 cut(s) 228, 250, 744, 825
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 2 cut(s) 654, 763
Hin1II CATG 4 cut(s) 157, 199, 483, 525
HinfI GANTC 5 cut(s) 127, 697, 783, 797, 839
HphI GGTGA 3 cut(s) 25, 320, 778
Hpy166II GTNNAC 2 cut(s) 311, 564
Hpy188I TCNGA 4 cut(s) 362, 716, 802, 838
Hpy188III TCNNGA 1 cut(s) 780
Hpy8I GTNNAC 2 cut(s) 311, 564
HpyAV CCTTC 4 cut(s) 49, 59, 400, 683
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 8 cut(s) 113, 122, 170, 230, 252, 456, 518, 564
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 157, 199, 483, 525
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 9 cut(s) 122, 216, 278, 310, 618, 634, 793, 804, 806
Lsp1109I GCAGC 4 cut(s) 214, 236, 755, 836
LweI GCATC 2 cut(s) 505, 527
MaeI CTAG 1 cut(s) 710
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 2 cut(s) 88, 784
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 580, 806
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 463, 566
MluCI AATT 5 cut(s) 105, 416, 553, 663, 754
MlyI GAGTC 3 cut(s) 121, 691, 792
MmeI TCCRAC 2 cut(s) 340, 694
MnlI CCTC 7 cut(s) 22, 55, 232, 344, 584, 787, 825
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 5 cut(s) 45, 419, 552, 662, 764
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 324
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 2 cut(s) 170, 261
MwoI GCNNNNNNNGC 1 cut(s) 119
NcoI CCATGG 1 cut(s) 479
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 157, 199, 483, 525
NmuCI GTSAC 2 cut(s) 88, 784
NsiI ATGCAT 1 cut(s) 520
NspI RCATGY 1 cut(s) 157
PciI ACATGT 1 cut(s) 153
PctI GAATGC 2 cut(s) 170, 261
PfeI GAWTC 2 cut(s) 797, 839
PkrI GCNGC 4 cut(s) 229, 251, 745, 826
PleI GAGTC 3 cut(s) 121, 691, 791
PpsI GAGTC 3 cut(s) 121, 691, 791
Ppu21I YACGTR 1 cut(s) 88
PscI ACATGT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 704
PspFI CCCAGC 1 cut(s) 136
PstI CTGCAG 2 cut(s) 232, 254
PvuII CAGCTG 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 5 cut(s) 45, 419, 552, 662, 764
SatI GCNGC 4 cut(s) 228, 250, 744, 825
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 3 cut(s) 121, 691, 792
SduI GDGCHC 2 cut(s) 463, 566
SfaNI GCATC 2 cut(s) 505, 527
SfcI CTRYAG 4 cut(s) 75, 228, 250, 818
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 2 cut(s) 236, 370
SmoI CTYRAG 2 cut(s) 236, 370
Sse9I AATT 5 cut(s) 105, 416, 553, 663, 754
SspMI CTAG 1 cut(s) 710
StyI CCWWGG 2 cut(s) 36, 479
TaiI ACGT 1 cut(s) 90
TasI AATT 5 cut(s) 105, 416, 553, 663, 754
TfiI GAWTC 2 cut(s) 797, 839
Tru1I TTAA 5 cut(s) 45, 419, 552, 662, 764
Tru9I TTAA 5 cut(s) 45, 419, 552, 662, 764
TscAI CASTG 2 cut(s) 279, 463
TseFI GTSAC 2 cut(s) 88, 784
TseI GCWGC 4 cut(s) 227, 249, 743, 824
Tsp45I GTSAC 2 cut(s) 88, 784
TspDTI ATGAA 1 cut(s) 463
TspGWI ACGGA 1 cut(s) 4
TspRI CASTG 2 cut(s) 279, 463
VneI GTGCAC 1 cut(s) 562
XceI RCATGY 1 cut(s) 157
XspI CTAG 1 cut(s) 710
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.