Rw5G017670

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004974
Physical Location & Seq
Reverse (-)
22569791 .. 22574815
5025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017670.1

Sequence Viewer

Length: 1011 bp
ATGGCAGATCGGGCGCGTCTTTTCTGCAAGGATGAGGTCCTCACTTACTCTTATCTTCTTCTCTACATCGCTCTCTCCAGCGGTCAGATCTTCTTCAACAAGTGGGTTTTGTCTTCCAAGGAAATCAACTTCCCTTACCCTCTGGGATTGACTCTACTTCACATGATCTTCTCCTCTGTTTTATGCTTTTTACTCACCAAGGTTTTTAAGATTTTGAAGGTTGAGGAAGGGATGACTACAGAAATATACGTGACATCAGTAATGCCAATTGGTGCAATGTTTGCAATGACTCTTTGGCTGGGAAATACTGCCTACATGTATATTTCTGTTGCATTCGCACAGATGTTGAAAGCAATCATGCCCGTAGCTGTGTTTGTTCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTGCAGAATGCTATTGATAATGTCAGTGATAAGTTTTGGCGTTCTGGTGGCTTCTTATGGTGAATTAAATATCAGCTGGATTGGAGTAGTTTATCAAATGGGAGGAGTTGTCGGAGAAGCCTTGAGACTTATTTTTATGGAGATTTTTGTCAAAAGGAAGGGTCTCAAATTAAATCCAATATCTGTTATGTTCTATGTTAGCCCGTGCAGTGCTCTTTGCCTATTCATTCCATGGATATTTTTAGAGAAAACCAAGATGGAAGCAGATGCATCATGGAACTTTCCAATCGTGGTGCTAACACTTAATTCTCTGTGCACCTTTGCCCTCAACTTATCAGTCTTCCTTGTGATTACTCATACAAGTGCTTTGACCATTCGTGTTGCTGGAGTTGTCAAGGACTGGGTGGTTGTCTTAATTTCTGCCCTTCTTTTCGCTGATACAAAGCTGACTCTTATAAATCTAGTTGGATATGCCATTGCCATAGCGGGTGTAGCAGCATACAATAATTTCAAGTTAAAAAAAGAAGCCTCCAGAGTCACCCCTGAAGAATCTGAAAGTTCTCAACCTCTACAGGCAGCCACAACATCAGATTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

336

Amino Acids

37.14

Weight (kDa)

8.63

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 18 - 305 3.3e-24 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
AccII CGCG 1 cut(s) 16
AciI CCGC 2 cut(s) 81, 896
AcuI CTGAAG 1 cut(s) 975
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 4 cut(s) 97, 217, 349, 922
AluBI AGCT 5 cut(s) 368, 389, 411, 486, 856
AluI AGCT 5 cut(s) 368, 389, 411, 486, 856
Alw21I GWGCWC 2 cut(s) 625, 728
Alw26I GTCTC 2 cut(s) 529, 578
Alw44I GTGCAC 1 cut(s) 724
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 4 cut(s) 389, 411, 905, 986
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 187, 482, 940
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 728
BbsI GAAGAC 2 cut(s) 105, 742
Bbv12I GWGCWC 2 cut(s) 625, 728
BbvI GCAGC 4 cut(s) 376, 398, 917, 998
BccI CCATC 1 cut(s) 661
BcoDI GTCTC 2 cut(s) 529, 578
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 4 cut(s) 237, 390, 412, 980
BglII AGATCT 1 cut(s) 87
BisI GCNGC 4 cut(s) 390, 412, 906, 987
BlsI GCNGC 4 cut(s) 391, 413, 907, 988
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 2 cut(s) 667, 689
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 2 cut(s) 105, 742
BpmI CTGGAG 3 cut(s) 61, 816, 925
BpuEI CTTGAG 2 cut(s) 419, 553
BsaAI YACGTR 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 3 cut(s) 117, 198, 641
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse1I ACTGG 1 cut(s) 815
Bse3DI GCAATG 3 cut(s) 282, 291, 885
BseDI CCNNGG 3 cut(s) 117, 198, 641
BseGI GGATG 2 cut(s) 37, 237
BseMI GCAATG 3 cut(s) 282, 291, 885
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 2 cut(s) 163, 528
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 4 cut(s) 376, 398, 917, 998
BseYI CCCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 1 cut(s) 16
BsiHKAI GWGCWC 2 cut(s) 625, 728
BsmAI GTCTC 2 cut(s) 529, 578
BsmI GAATGC 2 cut(s) 332, 423
Bso31I GGTCTC 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 625, 728
Bsp143I GATC 3 cut(s) 7, 87, 165
Bsp19I CCATGG 1 cut(s) 641
BspACI CCGC 2 cut(s) 81, 896
BspFNI CGCG 1 cut(s) 16
BspMAI CTGCAG 2 cut(s) 394, 416
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 3 cut(s) 282, 291, 885
BsrI ACTGG 1 cut(s) 815
BssECI CCNNGG 3 cut(s) 117, 198, 641
BssMI GATC 3 cut(s) 7, 87, 165
BssT1I CCWWGG 3 cut(s) 117, 198, 641
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 250
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 2 cut(s) 37, 237
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 10, 90, 168
BstMAI GTCTC 2 cut(s) 529, 578
BstMBI GATC 3 cut(s) 7, 87, 165
BstMWI GCNNNNNNNGC 3 cut(s) 11, 281, 902
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 4 cut(s) 237, 390, 412, 980
BstSLI GKGCMC 1 cut(s) 728
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 376, 398, 917, 998
BstV2I GAAGAC 2 cut(s) 105, 742
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 641
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 2 cut(s) 37, 237
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 2 cut(s) 441, 625
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 5
CviAII CATG 5 cut(s) 163, 316, 358, 642, 684
DpnI GATC 3 cut(s) 9, 89, 167
DpnII GATC 3 cut(s) 7, 87, 165
Eco130I CCWWGG 3 cut(s) 117, 198, 641
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 3 cut(s) 117, 198, 641
EcoT22I ATGCAT 1 cut(s) 682
ErhI CCWWGG 3 cut(s) 117, 198, 641
FaeI CATG 5 cut(s) 166, 319, 361, 645, 687
FatI CATG 5 cut(s) 162, 315, 357, 641, 683
FauI CCCGC 1 cut(s) 889
Fnu4HI GCNGC 4 cut(s) 390, 412, 906, 987
FokI GGATG 2 cut(s) 44, 244
Fsp4HI GCNGC 4 cut(s) 390, 412, 906, 987
FspBI CTAG 1 cut(s) 872
GlaI GCGC 1 cut(s) 15
GluI GCNGC 4 cut(s) 390, 412, 906, 987
GsaI CCCAGC 1 cut(s) 302
GsuI CTGGAG 3 cut(s) 61, 816, 925
HgaI GACGC 1 cut(s) 5
HhaI GCGC 1 cut(s) 16
Hin1II CATG 5 cut(s) 166, 319, 361, 645, 687
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 6 cut(s) 151, 289, 859, 945, 959, 1001
HphI GGTGA 3 cut(s) 187, 482, 940
Hpy166II GTNNAC 1 cut(s) 726
Hpy188I TCNGA 4 cut(s) 87, 524, 964, 1000
Hpy188III TCNNGA 1 cut(s) 942
Hpy8I GTNNAC 1 cut(s) 726
HpyAV CCTTC 4 cut(s) 211, 221, 562, 845
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 9 cut(s) 27, 275, 284, 332, 392, 414, 618, 680, 726
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 281, 902
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 5 cut(s) 166, 319, 361, 645, 687
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 3 cut(s) 7, 87, 165
Lsp1109I GCAGC 4 cut(s) 376, 398, 917, 998
LweI GCATC 2 cut(s) 667, 689
MaeI CTAG 1 cut(s) 872
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 2 cut(s) 250, 946
MalI GATC 3 cut(s) 9, 89, 167
MboI GATC 3 cut(s) 7, 87, 165
MboII GAAGA 8 cut(s) 47, 50, 82, 85, 105, 160, 742, 968
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 625, 728
MluCI AATT 6 cut(s) 267, 473, 578, 715, 825, 916
MlyI GAGTC 4 cut(s) 145, 283, 853, 954
MmeI TCCRAC 2 cut(s) 502, 856
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 6 cut(s) 207, 476, 581, 714, 824, 926
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 81, 486
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 332, 423
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 11, 281, 902
NcoI CCATGG 1 cut(s) 641
NdeII GATC 3 cut(s) 7, 87, 165
NlaIII CATG 5 cut(s) 166, 319, 361, 645, 687
NmuCI GTSAC 2 cut(s) 250, 946
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 1 cut(s) 319
PciI ACATGT 1 cut(s) 315
PctI GAATGC 2 cut(s) 332, 423
PfeI GAWTC 2 cut(s) 959, 1001
PkrI GCNGC 4 cut(s) 391, 413, 907, 988
PleI GAGTC 4 cut(s) 145, 283, 853, 953
PpsI GAGTC 4 cut(s) 145, 283, 853, 953
Ppu21I YACGTR 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 37
PscI ACATGT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 866
Psp5II RGGWCCY 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 2 cut(s) 394, 416
PsuI RGATCY 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 6 cut(s) 207, 476, 581, 714, 824, 926
SatI GCNGC 4 cut(s) 390, 412, 906, 987
Sau3AI GATC 3 cut(s) 7, 87, 165
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 4 cut(s) 145, 283, 853, 954
SduI GDGCHC 2 cut(s) 625, 728
SfaNI GCATC 2 cut(s) 667, 689
SfcI CTRYAG 4 cut(s) 237, 390, 412, 980
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 398, 532
SmoI CTYRAG 2 cut(s) 398, 532
Sse9I AATT 6 cut(s) 267, 473, 578, 715, 825, 916
SsiI CCGC 2 cut(s) 81, 896
SspMI CTAG 1 cut(s) 872
StyI CCWWGG 3 cut(s) 117, 198, 641
TaiI ACGT 1 cut(s) 252
TasI AATT 6 cut(s) 267, 473, 578, 715, 825, 916
TfiI GAWTC 2 cut(s) 959, 1001
Tru1I TTAA 6 cut(s) 207, 476, 581, 714, 824, 926
Tru9I TTAA 6 cut(s) 207, 476, 581, 714, 824, 926
TscAI CASTG 2 cut(s) 441, 625
TseFI GTSAC 2 cut(s) 250, 946
TseI GCWGC 4 cut(s) 389, 411, 905, 986
Tsp45I GTSAC 2 cut(s) 250, 946
TspDTI ATGAA 1 cut(s) 625
TspRI CASTG 2 cut(s) 441, 625
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 319
XspI CTAG 1 cut(s) 872
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.