RchiOBHm_Chr5g0027551

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004974
Physical Location & Seq
Reverse (-)
21488465 .. 21494759
6295 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30710

Sequence Viewer

Length: 1119 bp
ATGAATCCGACCGCTGGCAGTGTCCCTCAAAATTCCTTTACGTACTGCTTTGACCTTCATTCTCAAACCATTTGGGTTCAGACAGAACACAACACACACACACACAAAATGGCAGATCGGGCGCGTCTTTTCTGCAAGGATGAGGTCCTCACTTACTCTTATCTTCTTCTCTACATCGCTCTCTCCAGCGGTCAGATCTTCTTCAACAAGTGGGTTTTGTCTTCGAAGGAAATCAACTTCCCTTACCCTCTGGGATTGACTCTACTTCACATGATCTTCTCCTCCGTTTTATGCTTTTTACTCACCAAGGTTTTTAAGATTTTGAAGGTTGAGGAAGGGATGACTACAGAAATATACGTGACATCAGTAATGCCAATTGGTGCAATGTTTGCAATGACTCTTTGGCTGGGAAATACTGCCTACATGTATATTTCTGTTGCATTCGCACAGATGTTGAAAGCAATCATGCCCGTAGCTGTTTTTGTTCTTGGAGTAGCTGCAGGACTTGAGGTAATGAGCTGCAGAATGCTATTGATAATGTCAGTGATAAGTTTTGGCGTTCTGGTGGCTTCTTATGGTGAACTAAATATCAGCTGGATTGGAGTAGTTTATCAAATGGGAGGAGTTGTCGGAGAAGCCTTGAGACTTATTTTTATGGAGATTTTTGTCAAAAGGAAGGGTCTCAAATTAAATCCAATATCTGTTATGTTCTATGTTAGCCCGTGCAGTGCTCTTTGCCTATTCATTCCATGGATATTTTTAGAGAAAACCAAGATGGAAGCAGATGCATCATGGAACTTTCCAATCGTGGTGCTAACACTTAATTCTCTGTGCACCTTTGCCCTCAACTTATCAGTCTTCCTTGTGATTACTCATACAAGTGCTTTGACCATTCGTGTTGCTGGAGTTGTCAAGGACTGGGTGGTTGTCTTAATTTCTGCCCTTCTTTTCGCTGATACAAAGCTGACTCTTATAAATCTAGTCGGATATGCCATTGCCATAACGGGTGTAGCAGCATACAATAATTTCAAGTTAAAAAAAGAAGCCTCCAGAGTCACCCCTGAAGAATCTGAAAGTTCTCAACCTCTACAGGCAGCCACAACATCAGATTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

372

Amino Acids

41.31

Weight (kDa)

8.37

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 54 - 341 7.9e-24 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 974
AccII CGCG 1 cut(s) 124
AciI CCGC 2 cut(s) 12, 189
AcsI RAATTY 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 1083
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 4 cut(s) 205, 325, 457, 1030
AluBI AGCT 5 cut(s) 476, 497, 519, 594, 964
AluI AGCT 5 cut(s) 476, 497, 519, 594, 964
Alw21I GWGCWC 2 cut(s) 733, 836
Alw26I GTCTC 2 cut(s) 637, 686
Alw44I GTGCAC 1 cut(s) 832
ApaLI GTGCAC 1 cut(s) 832
ApeKI GCWGC 4 cut(s) 497, 519, 1013, 1094
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 295, 590, 1048
AsuII TTCGAA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 836
BbsI GAAGAC 2 cut(s) 213, 850
Bbv12I GWGCWC 2 cut(s) 733, 836
BbvI GCAGC 4 cut(s) 484, 506, 1025, 1106
BccI CCATC 1 cut(s) 769
BcoDI GTCTC 2 cut(s) 637, 686
BfaI CTAG 1 cut(s) 980
BfmI CTRYAG 4 cut(s) 345, 498, 520, 1088
BglII AGATCT 1 cut(s) 195
BisI GCNGC 4 cut(s) 498, 520, 1014, 1095
BlsI GCNGC 4 cut(s) 499, 521, 1015, 1096
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 928
BmsI GCATC 2 cut(s) 775, 797
BmuI ACTGGG 1 cut(s) 928
BpiI GAAGAC 2 cut(s) 213, 850
BpmI CTGGAG 3 cut(s) 169, 924, 1033
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 527, 661
BsaAI YACGTR 2 cut(s) 42, 358
BsaI GGTCTC 1 cut(s) 686
BsaJI CCNNGG 2 cut(s) 306, 749
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 923
Bse3DI GCAATG 3 cut(s) 390, 399, 993
BseDI CCNNGG 2 cut(s) 306, 749
BseGI GGATG 2 cut(s) 145, 345
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 3 cut(s) 390, 399, 993
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 2 cut(s) 271, 636
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 4 cut(s) 484, 506, 1025, 1106
BseYI CCCAGC 1 cut(s) 406
BsgI GTGCAG 1 cut(s) 745
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 2 cut(s) 733, 836
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 2 cut(s) 637, 686
BsmFI GGGAC 1 cut(s) 8
BsmI GAATGC 2 cut(s) 440, 531
Bso31I GGTCTC 1 cut(s) 686
Bsp119I TTCGAA 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 733, 836
Bsp143I GATC 3 cut(s) 115, 195, 273
Bsp19I CCATGG 1 cut(s) 749
BspACI CCGC 2 cut(s) 12, 189
BspFNI CGCG 1 cut(s) 124
BspMAI CTGCAG 2 cut(s) 502, 524
BspT104I TTCGAA 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 686
BsrDI GCAATG 3 cut(s) 390, 399, 993
BsrI ACTGG 1 cut(s) 923
BssECI CCNNGG 2 cut(s) 306, 749
BssMI GATC 3 cut(s) 115, 195, 273
BssT1I CCWWGG 2 cut(s) 306, 749
BstAPI GCANNNNNTGC 1 cut(s) 389
BstBAI YACGTR 2 cut(s) 42, 358
BstBI TTCGAA 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 749
BstF5I GGATG 2 cut(s) 145, 345
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 3 cut(s) 118, 198, 276
BstMAI GTCTC 2 cut(s) 637, 686
BstMBI GATC 3 cut(s) 115, 195, 273
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 2 cut(s) 119, 389
BstNSI RCATGY 1 cut(s) 427
BstSFI CTRYAG 4 cut(s) 345, 498, 520, 1088
BstSLI GKGCMC 1 cut(s) 836
BstSNI TACGTA 1 cut(s) 42
BstUI CGCG 1 cut(s) 124
BstV1I GCAGC 4 cut(s) 484, 506, 1025, 1106
BstV2I GAAGAC 2 cut(s) 213, 850
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 749
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 145, 345
BtsI GCAGTG 2 cut(s) 25, 733
BtsIMutI CAGTG 3 cut(s) 25, 549, 733
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 43
CviAII CATG 5 cut(s) 271, 424, 466, 750, 792
CviQI GTAC 1 cut(s) 43
DpnI GATC 3 cut(s) 117, 197, 275
DpnII GATC 3 cut(s) 115, 195, 273
Eco105I TACGTA 1 cut(s) 42
Eco130I CCWWGG 2 cut(s) 306, 749
Eco31I GGTCTC 1 cut(s) 686
Eco47I GGWCC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 1083
EcoO109I RGGNCCY 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 306, 749
EcoT22I ATGCAT 1 cut(s) 790
ErhI CCWWGG 2 cut(s) 306, 749
FaeI CATG 5 cut(s) 274, 427, 469, 753, 795
FaqI GGGAC 1 cut(s) 8
FatI CATG 5 cut(s) 270, 423, 465, 749, 791
Fnu4HI GCNGC 4 cut(s) 498, 520, 1014, 1095
FokI GGATG 2 cut(s) 152, 352
Fsp4HI GCNGC 4 cut(s) 498, 520, 1014, 1095
FspBI CTAG 1 cut(s) 980
GlaI GCGC 1 cut(s) 123
GluI GCNGC 4 cut(s) 498, 520, 1014, 1095
GsaI CCCAGC 1 cut(s) 410
GsuI CTGGAG 3 cut(s) 169, 924, 1033
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 274, 427, 469, 753, 795
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 7 cut(s) 4, 259, 397, 967, 1053, 1067, 1109
HphI GGTGA 3 cut(s) 295, 590, 1048
Hpy166II GTNNAC 2 cut(s) 581, 834
Hpy188I TCNGA 7 cut(s) 9, 81, 195, 632, 986, 1072, 1108
Hpy188III TCNNGA 1 cut(s) 1050
Hpy8I GTNNAC 2 cut(s) 581, 834
HpyAV CCTTC 6 cut(s) 65, 220, 319, 329, 670, 953
HpyCH4IV ACGT 2 cut(s) 41, 357
HpyCH4V TGCA 9 cut(s) 135, 383, 392, 440, 500, 522, 726, 788, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 389
HpySE526I ACGT 2 cut(s) 41, 357
Hsp92II CATG 5 cut(s) 274, 427, 469, 753, 795
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 3 cut(s) 115, 195, 273
Lsp1109I GCAGC 4 cut(s) 484, 506, 1025, 1106
LweI GCATC 2 cut(s) 775, 797
MaeI CTAG 1 cut(s) 980
MaeII ACGT 2 cut(s) 41, 357
MaeIII GTNAC 2 cut(s) 358, 1054
MalI GATC 3 cut(s) 117, 197, 275
MboI GATC 3 cut(s) 115, 195, 273
MboII GAAGA 8 cut(s) 155, 158, 190, 193, 213, 268, 850, 1076
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 733, 836
MluCI AATT 6 cut(s) 31, 375, 686, 823, 933, 1024
MlyI GAGTC 4 cut(s) 253, 391, 961, 1062
MmeI TCCRAC 3 cut(s) 32, 610, 964
Mph1103I ATGCAT 1 cut(s) 790
MseI TTAA 5 cut(s) 315, 689, 822, 932, 1034
MslI CAYNNNNRTG 1 cut(s) 879
MspA1I CMGCKG 3 cut(s) 14, 189, 594
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 2 cut(s) 440, 531
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 119, 389
NcoI CCATGG 1 cut(s) 749
NdeII GATC 3 cut(s) 115, 195, 273
NlaIII CATG 5 cut(s) 274, 427, 469, 753, 795
NmuCI GTSAC 2 cut(s) 358, 1054
NsiI ATGCAT 1 cut(s) 790
NspI RCATGY 1 cut(s) 427
NspV TTCGAA 1 cut(s) 224
PciI ACATGT 1 cut(s) 423
PctI GAATGC 2 cut(s) 440, 531
PfeI GAWTC 3 cut(s) 4, 1067, 1109
PkrI GCNGC 4 cut(s) 499, 521, 1015, 1096
PleI GAGTC 4 cut(s) 253, 391, 961, 1061
PpsI GAGTC 4 cut(s) 253, 391, 961, 1061
Ppu21I YACGTR 2 cut(s) 42, 358
PpuMI RGGWCCY 1 cut(s) 145
PscI ACATGT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 974
Psp5II RGGWCCY 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 406
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PstI CTGCAG 2 cut(s) 502, 524
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 594
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 879
SaqAI TTAA 5 cut(s) 315, 689, 822, 932, 1034
SatI GCNGC 4 cut(s) 498, 520, 1014, 1095
Sau3AI GATC 3 cut(s) 115, 195, 273
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 4 cut(s) 253, 391, 961, 1062
SduI GDGCHC 2 cut(s) 733, 836
SfaNI GCATC 2 cut(s) 775, 797
SfcI CTRYAG 4 cut(s) 345, 498, 520, 1088
SfuI TTCGAA 1 cut(s) 224
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 879
SmlI CTYRAG 2 cut(s) 506, 640
SmoI CTYRAG 2 cut(s) 506, 640
SnaBI TACGTA 1 cut(s) 42
Sse9I AATT 6 cut(s) 31, 375, 686, 823, 933, 1024
SsiI CCGC 2 cut(s) 12, 189
SspMI CTAG 1 cut(s) 980
StyI CCWWGG 2 cut(s) 306, 749
TaiI ACGT 2 cut(s) 44, 360
TaqI TCGA 1 cut(s) 224
TasI AATT 6 cut(s) 31, 375, 686, 823, 933, 1024
TfiI GAWTC 3 cut(s) 4, 1067, 1109
Tru1I TTAA 5 cut(s) 315, 689, 822, 932, 1034
Tru9I TTAA 5 cut(s) 315, 689, 822, 932, 1034
TscAI CASTG 3 cut(s) 25, 549, 733
TseFI GTSAC 2 cut(s) 358, 1054
TseI GCWGC 4 cut(s) 497, 519, 1013, 1094
Tsp45I GTSAC 2 cut(s) 358, 1054
TspDTI ATGAA 3 cut(s) 17, 47, 733
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 3 cut(s) 25, 549, 733
VneI GTGCAC 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 427
XspI CTAG 1 cut(s) 980
Zsp2I ATGCAT 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.