Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004974

Physical Location & Seq

Genomic Coordinates Reverse (-)

8453680 .. 8459115

Gene Structure 5436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G148000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGGATCGGCTGCGAGCTTTGTTCAAAGGTGAGGCCCTCACTTACGCCTACCTTCTTCTCTACATCGCACTCTCCAGCGGCCAGATCTTCTTCAACAAGTGGGTTTTGTCGTCCAAAGAAATAAACTTCCCTTATCCTCTTGGATTGACTCTGCTTCACATGGTCTTCTCCTCTGTCTTATGCTTTTTACTCACGAAAGTTTTTAAGATTATGAAGATTGAGGAAGGAATGACAGTAGAAATATACGTCTCATCAGTAATGCCAATTGGTGCAATGTTTGCAATGACTCTTTGGCTGGGAAATACGGCCTACATGTATATTTCTGTTGCATTTGCACAAATGTTGAAAGCAATCATGCCAGTAGCTGTTTTCATTCTTGGAGTAGCAGCAGGACTTGAGGTAATGAGCTGCAGAATGCTATTGATCATGTCAGTGATAAGTTTAGGTGTTCTGGTGGCTTCTTACGGTGAAATAAATATCAGCTGGATTGGAGTAGTTTATCAAATGGGAGGAGTTGTTGGAGAAGCTTTAAGACTTATTTTTATGGAGATTTTTGTTAAAAGGAAGGGTCTCAAATTAAATCCAATATCTCTCATGTACTATGTTAGCCCGTGCAGTGCTCTTTGCCTACTCATTCCATGGATCTTTTTGGAGAAAACAAAGATGGAAGAAAATAGCTCATGGAACTTTCCACTCCTTGTGCTAACACTCAACTCTCTGTGCACTTTTGCCCTCAACTTATCAGTTTTCCTTGTGATCACTCATACAAGTGCCTTGACCATTCGTGTTGCTGGAGTTGTCAAGGATTGGGTGGTTGTCTTATTGTCTGCCCTTCTCTTTTCTGATACAAAGCTGACTATTATAAATCTGGCAGGTTATGGCATTGCCATAGCAGGTGTAGCAGCATACAATAATCACAAGTTAAAAAAAGAAGTTTCTAGAGACAACCCTGAAGAAGCTGAAAGTTCTCAACCTACACTAACGGCGGCATCATCAGATTCCAACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

338

Amino Acids

37.19

Weight (kDa)

8.68

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53660 AT1G53660 AT1G53660 AT1G53660 AT1G53660 AT3G14410
fragaria_vesca	FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500
malus_domestica	MD05G1209500.v1.1 MD10G1195800.v1.1
prunus_persica	Prupe.4G148000_v2.0.a1 Prupe.4G148000_v2.0.a1
pyrus_communis	pycom10g16940
rosa_chinensis	RchiOBHm_Chr5g0027551
rosa_multiflora	Rmu_co8373801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051990
rosa_rugosa	Rorug05G0099700
rosa_samantha	Rh5AG193800 Rh5BG191800 Rh5CG212000 Rh5DG193700
rosa_wichuraiana	Rw5G017670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	866
AarI	CACCTGC	1 cut(s)	887
Acc36I	ACCTGC	2 cut(s)	866, 887
AciI	CCGC	3 cut(s)	5, 81, 989
AclWI	GGATC	2 cut(s)	15, 653
AcoI	YGGCCR	1 cut(s)	82
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	1 cut(s)	602
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	28, 97, 349
AluBI	AGCT	8 cut(s)	20, 368, 411, 486, 530, 681, 856, 962
AluI	AGCT	8 cut(s)	20, 368, 411, 486, 530, 681, 856, 962
Alw21I	GWGCWC	2 cut(s)	625, 728
Alw26I	GTCTC	3 cut(s)	256, 578, 939
Alw44I	GTGCAC	1 cut(s)	724
AlwI	GGATC	2 cut(s)	15, 653
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	36, 82, 309
ApaLI	GTGCAC	1 cut(s)	724
ApeKI	GCWGC	4 cut(s)	13, 389, 411, 905
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	44, 482
BaeGI	GKGCMC	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	2 cut(s)	625, 728
BbvI	GCAGC	3 cut(s)	398, 401, 917
BccI	CCATC	1 cut(s)	661
BceAI	ACGGC	2 cut(s)	324, 1002
BclI	TGATCA	2 cut(s)	426, 759
BcoDI	GTCTC	3 cut(s)	256, 578, 939
BfaI	CTAG	1 cut(s)	942
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	2 cut(s)	866, 887
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	6 cut(s)	14, 82, 390, 412, 906, 990
BlsI	GCNGC	6 cut(s)	15, 83, 391, 413, 907, 991
BmgT120I	GGNCC	1 cut(s)	37
BmsI	GCATC	1 cut(s)	1001
BpiI	GAAGAC	1 cut(s)	160
BpmI	CTGGAG	2 cut(s)	61, 816
BpuEI	CTTGAG	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	504, 534
Bse1I	ACTGG	1 cut(s)	362
Bse3DI	GCAATG	3 cut(s)	282, 291, 885
BseDI	CCNNGG	1 cut(s)	641
BseMI	GCAATG	3 cut(s)	282, 291, 885
BseNI	ACTGG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	163, 528
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	3 cut(s)	398, 401, 917
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	637
BshFI	GGCC	3 cut(s)	38, 84, 311
BsiHKAI	GWGCWC	2 cut(s)	625, 728
BsmAI	GTCTC	3 cut(s)	256, 578, 939
BsmBI	CGTCTC	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	3 cut(s)	38, 84, 311
Bso31I	GGTCTC	1 cut(s)	578
Bsp1286I	GDGCHC	2 cut(s)	625, 728
Bsp143I	GATC	5 cut(s)	7, 87, 426, 645, 759
Bsp19I	CCATGG	1 cut(s)	641
BspACI	CCGC	3 cut(s)	5, 81, 989
BspANI	GGCC	3 cut(s)	38, 84, 311
BspMAI	CTGCAG	1 cut(s)	416
BspMI	ACCTGC	2 cut(s)	866, 887
BspPI	GGATC	2 cut(s)	15, 653
BspTNI	GGTCTC	1 cut(s)	578
BsrDI	GCAATG	3 cut(s)	282, 291, 885
BsrI	ACTGG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	5 cut(s)	7, 87, 426, 645, 759
BssT1I	CCWWGG	1 cut(s)	641
Bst4CI	ACNGT	2 cut(s)	238, 470
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	641
BstKTI	GATC	5 cut(s)	10, 90, 429, 648, 762
BstMAI	GTCTC	3 cut(s)	256, 578, 939
BstMBI	GATC	5 cut(s)	7, 87, 426, 645, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 902
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	3 cut(s)	398, 401, 917
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	2 cut(s)	87, 645
BstYI	RGATCY	2 cut(s)	87, 645
BsuRI	GGCC	3 cut(s)	38, 84, 311
BtgI	CCRYGG	1 cut(s)	641
BtgZI	GCGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	2 cut(s)	441, 625
BveI	ACCTGC	2 cut(s)	866, 887
Cac8I	GCNNGC	1 cut(s)	18
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	7 cut(s)	163, 316, 358, 430, 598, 642, 684
CviQI	GTAC	1 cut(s)	601
DpnI	GATC	5 cut(s)	9, 89, 428, 647, 761
DpnII	GATC	5 cut(s)	7, 87, 426, 645, 759
EaeI	YGGCCR	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	641
Eco31I	GGTCTC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	975
EcoO109I	RGGNCCY	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	641
ErhI	CCWWGG	1 cut(s)	641
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	7 cut(s)	166, 319, 361, 433, 601, 645, 687
FatI	CATG	7 cut(s)	162, 315, 357, 429, 597, 641, 683
FbaI	TGATCA	2 cut(s)	426, 759
Fnu4HI	GCNGC	6 cut(s)	14, 82, 390, 412, 906, 990
Fsp4HI	GCNGC	6 cut(s)	14, 82, 390, 412, 906, 990
FspBI	CTAG	1 cut(s)	942
GluI	GCNGC	6 cut(s)	14, 82, 390, 412, 906, 990
GsaI	CCCAGC	1 cut(s)	302
GsuI	CTGGAG	2 cut(s)	61, 816
HaeIII	GGCC	3 cut(s)	38, 84, 311
Hin1II	CATG	7 cut(s)	166, 319, 361, 433, 601, 645, 687
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	3 cut(s)	151, 289, 1001
HphI	GGTGA	2 cut(s)	44, 482
Hpy166II	GTNNAC	1 cut(s)	726
Hpy188I	TCNGA	2 cut(s)	847, 1000
Hpy188III	TCNNGA	2 cut(s)	196, 942
Hpy8I	GTNNAC	1 cut(s)	726
HpyAV	CCTTC	4 cut(s)	65, 221, 562, 845
HpyCH4III	ACNGT	2 cut(s)	238, 470
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	7 cut(s)	275, 284, 332, 338, 414, 618, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 902
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	7 cut(s)	166, 319, 361, 433, 601, 645, 687
Ksp22I	TGATCA	2 cut(s)	426, 759
Kzo9I	GATC	5 cut(s)	7, 87, 426, 645, 759
Lsp1109I	GCAGC	3 cut(s)	398, 401, 917
LweI	GCATC	1 cut(s)	1001
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	1 cut(s)	249
MalI	GATC	5 cut(s)	9, 89, 428, 647, 761
MboI	GATC	5 cut(s)	7, 87, 426, 645, 759
MboII	GAAGA	7 cut(s)	50, 82, 85, 160, 229, 683, 968
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	87, 645
MhlI	GDGCHC	2 cut(s)	625, 728
MluCI	AATT	2 cut(s)	267, 578
MlyI	GAGTC	2 cut(s)	145, 283
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	8 cut(s)	28, 50, 150, 184, 217, 394, 506, 746
MseI	TTAA	5 cut(s)	207, 533, 561, 581, 926
MslI	CAYNNNNRTG	2 cut(s)	434, 771
MspA1I	CMGCKG	2 cut(s)	81, 486
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	423
MwoI	GCNNNNNNNGC	2 cut(s)	281, 902
NcoI	CCATGG	1 cut(s)	641
NdeII	GATC	5 cut(s)	7, 87, 426, 645, 759
NlaIII	CATG	7 cut(s)	166, 319, 361, 433, 601, 645, 687
NspI	RCATGY	1 cut(s)	319
PaqCI	CACCTGC	1 cut(s)	887
PciI	ACATGT	1 cut(s)	315
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	1001
PkrI	GCNGC	6 cut(s)	15, 83, 391, 413, 907, 991
PleI	GAGTC	2 cut(s)	145, 283
PpsI	GAGTC	2 cut(s)	145, 283
PscI	ACATGT	1 cut(s)	315
PsiI	TTATAA	1 cut(s)	866
PspFI	CCCAGC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	87, 645
PvuII	CAGCTG	1 cut(s)	486
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	2 cut(s)	434, 771
SaqAI	TTAA	5 cut(s)	207, 533, 561, 581, 926
SatI	GCNGC	6 cut(s)	14, 82, 390, 412, 906, 990
Sau3AI	GATC	5 cut(s)	7, 87, 426, 645, 759
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	145, 283
SduI	GDGCHC	2 cut(s)	625, 728
SfaNI	GCATC	1 cut(s)	1001
SfcI	CTRYAG	1 cut(s)	412
SmiMI	CAYNNNNRTG	2 cut(s)	434, 771
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	267, 578
SsiI	CCGC	3 cut(s)	5, 81, 989
SspMI	CTAG	1 cut(s)	942
StyI	CCWWGG	1 cut(s)	641
TaaI	ACNGT	2 cut(s)	238, 470
TaiI	ACGT	1 cut(s)	252
TasI	AATT	2 cut(s)	267, 578
TatI	WGTACW	1 cut(s)	600
TauI	GCSGC	2 cut(s)	84, 992
TfiI	GAWTC	1 cut(s)	1001
Tru1I	TTAA	5 cut(s)	207, 533, 561, 581, 926
Tru9I	TTAA	5 cut(s)	207, 533, 561, 581, 926
TscAI	CASTG	2 cut(s)	441, 625
TseI	GCWGC	4 cut(s)	13, 389, 411, 905
TspDTI	ATGAA	2 cut(s)	230, 364
TspRI	CASTG	2 cut(s)	441, 625
VneI	GTGCAC	1 cut(s)	724
XbaI	TCTAGA	1 cut(s)	941
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.