FvH4_3g16500

sugar phosphate phosphate translocator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004974
Physical Location & Seq
Reverse (-)
10418611 .. 10423798
5188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16500.t2

Sequence Viewer

Length: 1011 bp
ATGGCAGATCGGGCGCGTCTTTTCTGCAAGGATGAGGTCCTCACTTACTCTTACCTTCTTCTCTACATCGCTCTCTCCAGCGGTCAGATCTTCTTCAACAAGTGGGTTTTGTCTTCCAAGGAAATCAATTTCCCTTACCCTCTGGGATTAACTCTACTTCACATGATCTTCTCCTCCGTCTTATGTTTTTTACTCACCAAAGTTTTCAAGATTTTGAAGGTTGAGGAAGGAATGACTACAGAAATATATGTGACATCAGTAATGCCAATTGGTGCAATGTTTGCTATGACTCTTTGGCTGGGAAATACTGCCTACATGTATATTTCTGTTGCATTCGCGCAGATGTTGAAAGCAATCATGCCAGTTGCTGTTTTTGTTCTTGGCGTAGCTGCAGGACTTGAGGTAATGAGCTGCAGAATGCTATTGATAATGTCGGTGATAAGTTTTGGCGTTTTGGTAGCTTCTTATGGTGAATTAAATATAAACTGGATTGGAGTAGTTTATCAAATGGGAGGAGTTGTTGGAGAAGCCTTAAGACTTATCTTTATGGAGATTTTTGTCAAAAGGAAGGGTCTCAAATTAAATCCAATATCTGTCATGTTCTATGTTAGCCCGTGCAGTGCTCTTTGCCTTTTCGTTCCGTGGATATTTTTAGAGAAGACCAAGATGGAAGCAGATGCATCATGGAACTTTCCAGTTGTTGTGCTAACACTTAACTCTCTGTGCACCTTTGCCCTCAACTTATCAGTCTTCCTTGTGATTACTCATACAAGTGCTTTGACCATTCGTGTTGCCGGAGTGGTCAAGGACTGGGTGGTTGTCTTAATTTCAGCCCTTCTTTTCGCTGATACGAAGCTAACTCTTATAAATCTAGCCGGTTATGCCATTGCCATAGCAGGTGTAGCAGCATACAATAATCACAAGTTAAAAAAAGAAGCCTCCAGAGTCATCACTGAAGAATCTGGAAGTTCTCAACCTCTACAGGCGGCCACAACATCAGTTTCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

337

Amino Acids

37.02

Weight (kDa)

8.92

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 14 - 237 4.7e-21 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 866
AarI CACCTGC 1 cut(s) 887
Acc36I ACCTGC 1 cut(s) 887
AccII CGCG 2 cut(s) 16, 338
AciI CCGC 2 cut(s) 81, 986
AcoI YGGCCR 1 cut(s) 987
AcuI CTGAAG 1 cut(s) 975
AflII CTTAAG 1 cut(s) 532
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 4 cut(s) 97, 208, 217, 349
AluBI AGCT 4 cut(s) 389, 411, 461, 856
AluI AGCT 4 cut(s) 389, 411, 461, 856
Alw21I GWGCWC 2 cut(s) 625, 728
Alw26I GTCTC 1 cut(s) 578
Alw44I GTGCAC 1 cut(s) 724
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 1 cut(s) 987
ApaLI GTGCAC 1 cut(s) 724
ApeKI GCWGC 3 cut(s) 389, 411, 905
AspLEI GCGC 2 cut(s) 16, 340
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 3 cut(s) 187, 448, 482
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 728
BbsI GAAGAC 3 cut(s) 105, 665, 742
Bbv12I GWGCWC 2 cut(s) 625, 728
BbvI GCAGC 3 cut(s) 376, 398, 917
BccI CCATC 1 cut(s) 661
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 4 cut(s) 237, 390, 412, 980
BfrI CTTAAG 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 887
BglII AGATCT 1 cut(s) 87
BisI GCNGC 4 cut(s) 390, 412, 906, 987
BlsI GCNGC 4 cut(s) 391, 413, 907, 988
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 2 cut(s) 667, 689
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 3 cut(s) 105, 665, 742
BpmI CTGGAG 2 cut(s) 61, 925
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 117, 641
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse118I RCCGGY 1 cut(s) 875
Bse1I ACTGG 4 cut(s) 362, 491, 695, 815
Bse3DI GCAATG 2 cut(s) 282, 885
BseDI CCNNGG 2 cut(s) 117, 641
BseGI GGATG 1 cut(s) 37
BseMI GCAATG 2 cut(s) 282, 885
BseNI ACTGG 4 cut(s) 362, 491, 695, 815
BseRI GAGGAG 2 cut(s) 163, 528
BseSI GKGCMC 1 cut(s) 728
BseXI GCAGC 3 cut(s) 376, 398, 917
BseYI CCCAGC 1 cut(s) 298
BsgI GTGCAG 1 cut(s) 637
Bsh1236I CGCG 2 cut(s) 16, 338
BshFI GGCC 1 cut(s) 989
BsiHKAI GWGCWC 2 cut(s) 625, 728
BsiSI CCGG 2 cut(s) 795, 876
BsmAI GTCTC 1 cut(s) 578
BsmI GAATGC 2 cut(s) 332, 423
BsnI GGCC 1 cut(s) 989
Bso31I GGTCTC 1 cut(s) 578
Bsp1286I GDGCHC 2 cut(s) 625, 728
Bsp143I GATC 3 cut(s) 7, 87, 165
BspACI CCGC 2 cut(s) 81, 986
BspANI GGCC 1 cut(s) 989
BspFNI CGCG 2 cut(s) 16, 338
BspMAI CTGCAG 2 cut(s) 394, 416
BspMI ACCTGC 1 cut(s) 887
BspTI CTTAAG 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 578
BsrDI GCAATG 2 cut(s) 282, 885
BsrFI RCCGGY 1 cut(s) 875
BsrI ACTGG 4 cut(s) 362, 491, 695, 815
BssAI RCCGGY 1 cut(s) 875
BssECI CCNNGG 2 cut(s) 117, 641
BssMI GATC 3 cut(s) 7, 87, 165
BssT1I CCWWGG 1 cut(s) 117
BstAFI CTTAAG 1 cut(s) 532
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 2 cut(s) 16, 338
BstHHI GCGC 2 cut(s) 16, 340
BstKTI GATC 3 cut(s) 10, 90, 168
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 3 cut(s) 7, 87, 165
BstMWI GCNNNNNNNGC 4 cut(s) 11, 281, 881, 902
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 4 cut(s) 237, 390, 412, 980
BstSLI GKGCMC 1 cut(s) 728
BstUI CGCG 2 cut(s) 16, 338
BstV1I GCAGC 3 cut(s) 376, 398, 917
BstV2I GAAGAC 3 cut(s) 105, 665, 742
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 989
BtgI CCRYGG 1 cut(s) 641
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 2 cut(s) 625, 951
BveI ACCTGC 1 cut(s) 887
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 2 cut(s) 16, 340
Cfr10I RCCGGY 1 cut(s) 875
Cfr13I GGNCC 1 cut(s) 37
CseI GACGC 1 cut(s) 5
CviAII CATG 5 cut(s) 163, 316, 358, 598, 684
DpnI GATC 3 cut(s) 9, 89, 167
DpnII GATC 3 cut(s) 7, 87, 165
EaeI YGGCCR 1 cut(s) 987
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 5 cut(s) 166, 319, 361, 601, 687
FatI CATG 5 cut(s) 162, 315, 357, 597, 683
Fnu4HI GCNGC 4 cut(s) 390, 412, 906, 987
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 390, 412, 906, 987
FspBI CTAG 1 cut(s) 872
GlaI GCGC 2 cut(s) 15, 339
GluI GCNGC 4 cut(s) 390, 412, 906, 987
GsaI CCCAGC 1 cut(s) 302
GsuI CTGGAG 2 cut(s) 61, 925
HaeIII GGCC 1 cut(s) 989
HapII CCGG 2 cut(s) 795, 876
HgaI GACGC 1 cut(s) 5
HhaI GCGC 2 cut(s) 16, 340
Hin1II CATG 5 cut(s) 166, 319, 361, 601, 687
Hin6I GCGC 2 cut(s) 14, 338
HinP1I GCGC 2 cut(s) 14, 338
HinfI GANTC 3 cut(s) 289, 945, 959
HpaII CCGG 2 cut(s) 795, 876
HphI GGTGA 3 cut(s) 187, 448, 482
Hpy166II GTNNAC 1 cut(s) 726
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 3 cut(s) 208, 942, 963
Hpy8I GTNNAC 1 cut(s) 726
HpyAV CCTTC 5 cut(s) 65, 211, 221, 562, 845
HpyCH4V TGCA 8 cut(s) 27, 275, 332, 392, 414, 618, 680, 726
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 281, 881, 902
Hsp92II CATG 5 cut(s) 166, 319, 361, 601, 687
HspAI GCGC 2 cut(s) 14, 338
Kzo9I GATC 3 cut(s) 7, 87, 165
Lsp1109I GCAGC 3 cut(s) 376, 398, 917
LweI GCATC 2 cut(s) 667, 689
MaeI CTAG 1 cut(s) 872
MaeIII GTNAC 1 cut(s) 250
MalI GATC 3 cut(s) 9, 89, 167
MboI GATC 3 cut(s) 7, 87, 165
MboII GAAGA 8 cut(s) 50, 82, 85, 105, 160, 670, 742, 968
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 1 cut(s) 87
MhlI GDGCHC 2 cut(s) 625, 728
MluCI AATT 5 cut(s) 127, 267, 473, 578, 825
MlyI GAGTC 2 cut(s) 283, 954
MmeI TCCRAC 1 cut(s) 502
Mph1103I ATGCAT 1 cut(s) 682
MseI TTAA 7 cut(s) 149, 476, 533, 581, 714, 824, 926
MslI CAYNNNNRTG 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 532
MspI CCGG 2 cut(s) 795, 876
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 2 cut(s) 332, 423
MvnI CGCG 2 cut(s) 16, 338
MwoI GCNNNNNNNGC 4 cut(s) 11, 281, 881, 902
NdeII GATC 3 cut(s) 7, 87, 165
NlaIII CATG 5 cut(s) 166, 319, 361, 601, 687
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 682
NspI RCATGY 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 887
PciI ACATGT 1 cut(s) 315
PctI GAATGC 2 cut(s) 332, 423
PfeI GAWTC 1 cut(s) 959
PkrI GCNGC 4 cut(s) 391, 413, 907, 988
PleI GAGTC 2 cut(s) 283, 953
PpsI GAGTC 2 cut(s) 283, 953
PpuMI RGGWCCY 1 cut(s) 37
PscI ACATGT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 866
Psp5II RGGWCCY 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 37
PspPPI RGGWCCY 1 cut(s) 37
PstI CTGCAG 2 cut(s) 394, 416
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 771
SaqAI TTAA 7 cut(s) 149, 476, 533, 581, 714, 824, 926
SatI GCNGC 4 cut(s) 390, 412, 906, 987
Sau3AI GATC 3 cut(s) 7, 87, 165
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 2 cut(s) 283, 954
SduI GDGCHC 2 cut(s) 625, 728
SfaNI GCATC 2 cut(s) 667, 689
SfcI CTRYAG 4 cut(s) 237, 390, 412, 980
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 398, 532
SmoI CTYRAG 2 cut(s) 398, 532
Sse9I AATT 5 cut(s) 127, 267, 473, 578, 825
SsiI CCGC 2 cut(s) 81, 986
SspMI CTAG 1 cut(s) 872
StyI CCWWGG 1 cut(s) 117
TasI AATT 5 cut(s) 127, 267, 473, 578, 825
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 1 cut(s) 959
Tru1I TTAA 7 cut(s) 149, 476, 533, 581, 714, 824, 926
Tru9I TTAA 7 cut(s) 149, 476, 533, 581, 714, 824, 926
TscAI CASTG 2 cut(s) 625, 958
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 389, 411, 905
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 2 cut(s) 166, 630
TspRI CASTG 2 cut(s) 625, 958
Vha464I CTTAAG 1 cut(s) 532
VneI GTGCAC 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 319
XspI CTAG 1 cut(s) 872
Zsp2I ATGCAT 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.