Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8373801.1

Orthogroup ID

OG0004974

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 976

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8373801.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 628 bp

atgccaattggtgcaatgtttgcaatgactctttggctgggaaatactgcctacatgtatatttctgttgcattcgcacagatgttgaaagcaatcatgcccgtagctgtgtttgttcttggagtagctgcagggcttgaggtaatgagctgcagaatgctattgataatgtcagtgataagttttggcgttctggtggcttcttatggtgaattaaatatcagctggattggagtagtttatcaaatgggaggagttgtcggagaagccttgagacttatttttatggagatttttgtcaaaaggaagggtctcaaattaaatccaatatctgttatgttctatgttagcccgtgcagtgctctttgcctattcattccatggatatttttagagaaaaccaagatggaagcagatgcatcatggaactttccaatcgtggtgctaacacttaattctctgtgcacctttgccctcaacttatcagtcttccttgtgattactcatacaagtgctttgaccattcgtgttgctggagttgtcaaggactgggtggttgtcttaatttctgcccttcttttcgctgatacaaagctgactcttataaatctagtcggatatgccattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

209

Amino Acids

22.89

Weight (kDa)

8.7

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53660 AT1G53660 AT1G53660 AT1G53660 AT1G53660 AT3G14410
fragaria_vesca	FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500 FvH4_3g16500
malus_domestica	MD05G1209500.v1.1 MD10G1195800.v1.1
prunus_persica	Prupe.4G148000_v2.0.a1 Prupe.4G148000_v2.0.a1
pyrus_communis	pycom10g16940
rosa_chinensis	RchiOBHm_Chr5g0027551
rosa_multiflora	Rmu_co8373801.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051990
rosa_rugosa	Rorug05G0099700
rosa_samantha	Rh5AG193800 Rh5BG191800 Rh5CG212000 Rh5DG193700
rosa_wichuraiana	Rw5G017670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	88
AluBI	AGCT	5 cut(s)	107, 128, 150, 225, 595
AluI	AGCT	5 cut(s)	107, 128, 150, 225, 595
Alw21I	GWGCWC	2 cut(s)	364, 467
Alw26I	GTCTC	2 cut(s)	268, 317
Alw44I	GTGCAC	1 cut(s)	463
ApaLI	GTGCAC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	128, 150
AsuHPI	GGTGA	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	2 cut(s)	364, 467
BbvI	GCAGC	2 cut(s)	115, 137
BccI	CCATC	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	268, 317
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	129, 151
BisI	GCNGC	2 cut(s)	129, 151
BlsI	GCNGC	2 cut(s)	130, 152
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	406, 428
BmuI	ACTGGG	1 cut(s)	559
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	158, 292
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bse1I	ACTGG	1 cut(s)	554
Bse3DI	GCAATG	2 cut(s)	21, 30
BseDI	CCNNGG	1 cut(s)	380
BseMI	GCAATG	2 cut(s)	21, 30
BseNI	ACTGG	1 cut(s)	554
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	2 cut(s)	115, 137
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	364, 467
BsmAI	GTCTC	2 cut(s)	268, 317
BsmI	GAATGC	2 cut(s)	71, 162
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	364, 467
Bsp19I	CCATGG	1 cut(s)	380
BspMAI	CTGCAG	2 cut(s)	133, 155
BspTNI	GGTCTC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	21, 30
BsrI	ACTGG	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	380
BstMAI	GTCTC	2 cut(s)	268, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	129, 151
BstSLI	GKGCMC	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	115, 137
BstV2I	GAAGAC	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	380
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	2 cut(s)	180, 364
CviAII	CATG	4 cut(s)	55, 97, 381, 423
Eco130I	CCWWGG	1 cut(s)	380
Eco31I	GGTCTC	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	4 cut(s)	58, 100, 384, 426
FatI	CATG	4 cut(s)	54, 96, 380, 422
Fnu4HI	GCNGC	2 cut(s)	129, 151
Fsp4HI	GCNGC	2 cut(s)	129, 151
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	2 cut(s)	129, 151
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	555
Hin1II	CATG	4 cut(s)	58, 100, 384, 426
HinfI	GANTC	2 cut(s)	28, 598
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	2 cut(s)	263, 617
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	301, 584
HpyCH4V	TGCA	8 cut(s)	14, 23, 71, 131, 153, 357, 419, 465
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	58, 100, 384, 426
LpnPI	CCDG	6 cut(s)	23, 117, 179, 211, 519, 535
Lsp1109I	GCAGC	2 cut(s)	115, 137
LweI	GCATC	2 cut(s)	406, 428
MaeI	CTAG	1 cut(s)	611
MboII	GAAGA	1 cut(s)	481
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	2 cut(s)	364, 467
MluCI	AATT	5 cut(s)	6, 212, 317, 454, 564
MlyI	GAGTC	2 cut(s)	22, 592
MmeI	TCCRAC	2 cut(s)	241, 595
MnlI	CCTC	3 cut(s)	133, 245, 485
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	4 cut(s)	215, 320, 453, 563
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	2 cut(s)	71, 162
MwoI	GCNNNNNNNGC	1 cut(s)	20
NcoI	CCATGG	1 cut(s)	380
NlaIII	CATG	4 cut(s)	58, 100, 384, 426
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	2 cut(s)	71, 162
PkrI	GCNGC	2 cut(s)	130, 152
PleI	GAGTC	2 cut(s)	22, 592
PpsI	GAGTC	2 cut(s)	22, 592
PscI	ACATGT	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	605
PspFI	CCCAGC	1 cut(s)	37
PstI	CTGCAG	2 cut(s)	133, 155
PvuII	CAGCTG	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	4 cut(s)	215, 320, 453, 563
SatI	GCNGC	2 cut(s)	129, 151
SchI	GAGTC	2 cut(s)	22, 592
SduI	GDGCHC	2 cut(s)	364, 467
SetI	ASST	7 cut(s)	109, 130, 144, 152, 227, 470, 597
SfaNI	GCATC	2 cut(s)	406, 428
SfcI	CTRYAG	2 cut(s)	129, 151
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	137, 271
SmoI	CTYRAG	2 cut(s)	137, 271
Sse9I	AATT	5 cut(s)	6, 212, 317, 454, 564
SspMI	CTAG	1 cut(s)	611
StyI	CCWWGG	1 cut(s)	380
TasI	AATT	5 cut(s)	6, 212, 317, 454, 564
Tru1I	TTAA	4 cut(s)	215, 320, 453, 563
Tru9I	TTAA	4 cut(s)	215, 320, 453, 563
TscAI	CASTG	2 cut(s)	180, 364
TseI	GCWGC	2 cut(s)	128, 150
TspDTI	ATGAA	1 cut(s)	364
TspRI	CASTG	2 cut(s)	180, 364
VneI	GTGCAC	1 cut(s)	463
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.