Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Forward (+)

20091491 .. 20092423

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGACGAAGAATCTGTTTCTAATGGTTCTCTTTTCAGCAAATTCGAAGGAGAAGAGACGATGGGAAAAGTTCTTCTATTCTCAATCGTATCGATTTTCACAGGGATTCTATTCCTCCTCTTGCTTCATCTCTACGCAAGACTCTTTTGGTGGCGTGTGGAACAACATTTCAACCTAAACCTAATCCAATCCGACGATCCTGGCTCCACAGTCATCGGACGTAATCCTCGACGACGTCGTTTTGTCTTCGCTCAAAGTCAAGAAGATCCTCTTCACAACGCTGGACTTGATTCTAAAATTCTCCAATCTATCCATGTTGTTGTTTTCAAGTGTACGGACTTCAAAGACGGGTTAGAATGCGCCGTTTGTCTCTCTGATCTCGTTGATGGCGACAAAGCTAGGGTTTTGCCAAGGTGTAATCATGGGTTTCATGTGGATTGTATCGATATGTGGTTTCAGTCTCATTCCACTTGTCCTCTCTGTAGAAACACCGTTGGTTCCGTGGAAGATACGACACATGGAGGAAGTGAGGGTTTACCTCAAAATCAAAACTTTGAATCAGGGCACTCGACTAATCAGCATAATCCATCTCAAGATCAGAGCTTTGTTCATGAGTTTTCGACAGAACCTCTGAGTTTTCCGACAAATGTACTGGTTTGGGGAGATCAGAATCAAGTTAGAAGTGCAGGCCTCGTTGTTACTGAAGAATCTCCTTCTGGAAATTTTGCAGCTTCGTATAACGATCATCAACAAGAATCTAGTAGTACCAGATCACAAGAAGTGACGGCGGTTGTGGTGGACATTCCGGATAATTCAAGTGAGAATTTATCCGAGAGAATCGACGAAGAAGAACCTAAGTCACCGATGTTCACAAGGTTAAGATTGCTTAAGAATGTTTTGAGTAGAGAGAAGACCAACAACAACAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

310

Amino Acids

34.83

Weight (kDa)

5.06

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	119 - 162	3.3e-14	Ring finger domain
zf-RING_11	PF17123	119 - 148	5.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	119 - 161	4.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	120 - 161	4.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	131 - 162	4.6e-09	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	805
AciI	CCGC	1 cut(s)	788
AclWI	GGATC	2 cut(s)	191, 260
AcsI	RAATTY	4 cut(s)	41, 297, 721, 823
AcuI	CTGAAG	1 cut(s)	723
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	3 cut(s)	334, 651, 766
AflII	CTTAAG	1 cut(s)	887
AgsI	TTSAA	5 cut(s)	172, 328, 343, 557, 816
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	398, 603, 731
AluI	AGCT	3 cut(s)	398, 603, 731
Alw26I	GTCTC	3 cut(s)	50, 374, 465
AlwI	GGATC	2 cut(s)	191, 260
Aor13HI	TCCGGA	1 cut(s)	805
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	4 cut(s)	41, 297, 721, 823
AspLEI	GCGC	1 cut(s)	362
AsuHPI	GGTGA	1 cut(s)	852
AsuII	TTCGAA	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	238, 917
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	3 cut(s)	55, 380, 595
BceAI	ACGGC	2 cut(s)	347, 801
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	3 cut(s)	50, 374, 465
BfaI	CTAG	2 cut(s)	399, 759
BfmI	CTRYAG	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	887
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	205, 499
BmrFI	CCNGG	1 cut(s)	201
BpiI	GAAGAC	2 cut(s)	238, 917
Bpu14I	TTCGAA	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	576
Bsa29I	ATCGAT	2 cut(s)	92, 444
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	410, 501
BsaWI	WCCGGW	1 cut(s)	805
Bse1I	ACTGG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	805
BseBI	CCWGG	1 cut(s)	201
BseCI	ATCGAT	2 cut(s)	92, 444
BseDI	CCNNGG	2 cut(s)	410, 501
BseJI	GATNNNNATC	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	690
BshVI	ATCGAT	2 cut(s)	92, 444
BsiSI	CCGG	1 cut(s)	806
BsmAI	GTCTC	3 cut(s)	50, 374, 465
BsmBI	CGTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	690
Bsp119I	TTCGAA	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp13I	TCCGGA	1 cut(s)	805
Bsp143I	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
BspACI	CCGC	1 cut(s)	788
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	1 cut(s)	624
BspDI	ATCGAT	2 cut(s)	92, 444
BspEI	TCCGGA	1 cut(s)	805
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	205, 499
BspPI	GGATC	2 cut(s)	191, 260
BspT104I	TTCGAA	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	887
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	410, 501
BssMI	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
BssNI	GRCGYC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	211, 493
Bst6I	CTCTTC	2 cut(s)	48, 276
BstACI	GRCGYC	1 cut(s)	235
BstAFI	CTTAAG	1 cut(s)	887
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	688
BstDEI	CTNAG	2 cut(s)	632, 855
BstDSI	CCRYGG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	7 cut(s)	199, 268, 379, 598, 667, 745, 773
BstMAI	GTCTC	3 cut(s)	50, 374, 465
BstMBI	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	740
BstV2I	GAAGAC	2 cut(s)	238, 917
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
Bsu15I	ATCGAT	2 cut(s)	92, 444
BsuRI	GGCC	1 cut(s)	690
BsuTUI	ATCGAT	2 cut(s)	92, 444
BtgI	CCRYGG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	688
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	1 cut(s)	362
ClaI	ATCGAT	2 cut(s)	92, 444
Csp6I	GTAC	3 cut(s)	333, 650, 765
CviAII	CATG	5 cut(s)	314, 422, 431, 518, 611
CviJI	RGCY	5 cut(s)	204, 398, 603, 690, 731
CviKI_1	RGCY	5 cut(s)	204, 398, 603, 690, 731
CviQI	GTAC	3 cut(s)	333, 650, 765
DdeI	CTNAG	2 cut(s)	632, 855
DpnI	GATC	7 cut(s)	198, 267, 378, 597, 666, 744, 772
DpnII	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
Eam1104I	CTCTTC	2 cut(s)	48, 276
EarI	CTCTTC	2 cut(s)	48, 276
Eco130I	CCWWGG	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	690
Eco57I	CTGAAG	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	410
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	5 cut(s)	317, 425, 434, 521, 614
FaiI	YATR	8 cut(s)	315, 423, 432, 449, 519, 582, 612, 738
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FatI	CATG	5 cut(s)	313, 421, 430, 517, 610
Fnu4HI	GCNGC	1 cut(s)	729
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	2 cut(s)	399, 759
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	806
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	5 cut(s)	317, 425, 434, 521, 614
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	9 cut(s)	11, 106, 141, 290, 557, 670, 707, 755, 837
HpaII	CCGG	1 cut(s)	806
HphI	GGTGA	1 cut(s)	852
Hpy166II	GTNNAC	4 cut(s)	333, 536, 799, 870
Hpy188I	TCNGA	8 cut(s)	193, 218, 376, 600, 633, 642, 669, 832
Hpy188III	TCNNGA	5 cut(s)	260, 593, 611, 717, 806
Hpy8I	GTNNAC	4 cut(s)	333, 536, 799, 870
Hpy99I	CGWCG	5 cut(s)	197, 234, 237, 240, 845
HpyAV	CCTTC	2 cut(s)	41, 723
HpyCH4III	ACNGT	2 cut(s)	211, 493
HpyCH4IV	ACGT	2 cut(s)	220, 235
HpyCH4V	TGCA	2 cut(s)	686, 728
HpyF3I	CTNAG	2 cut(s)	632, 855
HpySE526I	ACGT	2 cut(s)	220, 235
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	5 cut(s)	317, 425, 434, 521, 614
HspAI	GCGC	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	805
Kzo9I	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	1 cut(s)	740
MaeI	CTAG	2 cut(s)	399, 759
MaeII	ACGT	2 cut(s)	220, 235
MaeIII	GTNAC	3 cut(s)	697, 781, 858
MalI	GATC	7 cut(s)	198, 267, 378, 597, 666, 744, 772
MboI	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	5 cut(s)	41, 297, 721, 811, 823
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	216, 665
MroI	TCCGGA	1 cut(s)	805
MseI	TTAA	2 cut(s)	878, 888
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	201
NdeII	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
NlaIII	CATG	5 cut(s)	317, 425, 434, 521, 614
NlaIV	GGNNCC	2 cut(s)	205, 499
NmuCI	GTSAC	2 cut(s)	781, 858
NspV	TTCGAA	1 cut(s)	45
PagI	TCATGA	1 cut(s)	610
PceI	AGGCCT	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	3 cut(s)	226, 235, 387
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	8 cut(s)	11, 106, 290, 557, 670, 707, 755, 837
PflFI	GACNNNGTC	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	2 cut(s)	205, 499
PsuI	RGATCY	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	234
RsaI	GTAC	3 cut(s)	334, 651, 766
RsaNI	GTAC	3 cut(s)	333, 650, 765
SaqAI	TTAA	2 cut(s)	878, 888
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	7 cut(s)	196, 265, 376, 595, 664, 742, 770
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	567
SfcI	CTRYAG	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	45
SmlI	CTYRAG	2 cut(s)	591, 887
SmoI	CTYRAG	2 cut(s)	591, 887
Sse9I	AATT	5 cut(s)	41, 297, 721, 811, 823
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	1 cut(s)	788
SspMI	CTAG	2 cut(s)	399, 759
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	2 cut(s)	211, 493
TaiI	ACGT	2 cut(s)	223, 238
TaqI	TCGA	7 cut(s)	45, 92, 229, 444, 569, 620, 840
TasI	AATT	5 cut(s)	41, 297, 721, 811, 823
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	8 cut(s)	11, 106, 290, 557, 670, 707, 755, 837
Tru1I	TTAA	2 cut(s)	878, 888
Tru9I	TTAA	2 cut(s)	878, 888
TseFI	GTSAC	2 cut(s)	781, 858
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	781, 858
TspDTI	ATGAA	3 cut(s)	116, 419, 599
TspGWI	ACGGA	2 cut(s)	350, 490
Tth111I	GACNNNGTC	1 cut(s)	234
Vha464I	CTTAAG	1 cut(s)	887
XapI	RAATTY	4 cut(s)	41, 297, 721, 823
XspI	CTAG	2 cut(s)	399, 759
ZraI	GACGTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.