Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Reverse (-)

28348325 .. 28349451

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGAGACTCATCTCTTGGCCTGGACGACTCACAAGCCGTACAACTCACCGGAAAAATCATGATGATCGCCGTACTAGTCCTCTTCTTAGTCGTCGTCTTCGTCCTCTGCCTCCACCTCTACGCCAAATGGTACTGGTGGGACGTTGTCGACGATCCCAACTCCTCCACCCGCAACACCGGCCGCAGACGCCGCCGTTTCGTCTTCGCTCCCGGCCAGGAATCCGGAGCCCCAACCCTCCGGCGAGGTCTAGACCCTTTAGTCCTCAGCTCTCTACCTTTAATTGTCTTCAGTCCTGAAGACTTCAAAGAAGGGTTGGAATGCGCTGTGTGTCTCTCTGATCTTGTTCAAGGCGAGAAGGCAAGGTTACTACCGAAATGTAACCATGGATTTCATGTTGAGTGCATTGACATGTGGTTTCAGTCACATTCCACATGTCCGCTTTGCCGGAACGCCGTTGTTCCGGAGGCTGTGGCTCGCTCTGATTCCTCTATTTCCGAGCTTAGTGTTGAAATTCCATCGCCTGCCGAGACTTTGGCTTCTGGGTTTTCTTCAGAGTCTCCAAATTTCCCTACAAATGTGTTGTTCTGGGGTAACCAGACAAGGGTTAGCTCCGGACCGGGTTTGGAGGAAGGGACTTCGGCTCAGGGACCATGTCCCTCTTCTTCTTCGGATACTAGAAGACCGGAGGGAATGTTGGTGATTGACATTCCGAGTGAGAGTCCAGTGACATCATTAGCATCGCCTTCACCTTCCGGGAATAACAGGTTTGCTGCAGCCGAGGAGGACTTGAAGTCTCCGGTGCCGACGAGGTTGAGGTCATTGAAGAGGCTGTTGAGCAGAGATAGGAGGATTAGTCCTTGTAGTCCAAGCTCGGCTGTTGATGTGGAAGCAGGGAGAGCACAAAGTTCTTTTGGAGATGATGTCAATTTGCTCAATGTTCTTTTATTCTTGGGGGAGGTGATCAAAGCTATCAGAGGTTGGAGCTTGAAGTCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

334

Amino Acids

36.13

Weight (kDa)

5.52

Isoelectric Point (pI)

66.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	107 - 150	1.1e-13	Ring finger domain
zf-RING_11	PF17123	107 - 136	2.7e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	107 - 149	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	122 - 150	1.1e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	3 cut(s)	224, 463, 614
AciI	CCGC	4 cut(s)	172, 184, 193, 440
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	2 cut(s)	181, 214
AcsI	RAATTY	2 cut(s)	513, 565
AcuI	CTGAAG	3 cut(s)	274, 318, 537
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	3 cut(s)	42, 75, 134
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflIII	ACRYGT	2 cut(s)	411, 434
AgsI	TTSAA	6 cut(s)	307, 350, 512, 793, 826, 991
AhdI	GACNNNNNGTC	1 cut(s)	793
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	21, 216
AluBI	AGCT	6 cut(s)	270, 502, 612, 873, 971, 987
AluI	AGCT	6 cut(s)	270, 502, 612, 873, 971, 987
Alw21I	GWGCWC	1 cut(s)	904
Alw26I	GTCTC	4 cut(s)	338, 524, 564, 801
AlwI	GGATC	1 cut(s)	149
Aor13HI	TCCGGA	3 cut(s)	224, 463, 614
AoxI	GGCC	3 cut(s)	19, 181, 214
ApeKI	GCWGC	2 cut(s)	773, 776
ApoI	RAATTY	2 cut(s)	513, 565
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	617, 650
AsuC2I	CCSGG	3 cut(s)	213, 621, 757
AsuHPI	GGTGA	4 cut(s)	40, 712, 741, 973
AvaII	GGWCC	2 cut(s)	617, 650
BanI	GGYRCC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	5 cut(s)	91, 196, 280, 306, 688
Bbv12I	GWGCWC	1 cut(s)	904
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	760, 788
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	4 cut(s)	23, 56, 180, 440
BciT130I	CCWGG	2 cut(s)	23, 218
BciVI	GTATCC	1 cut(s)	667
BclI	TGATCA	1 cut(s)	963
BcnI	CCSGG	3 cut(s)	213, 621, 757
BcoDI	GTCTC	4 cut(s)	338, 524, 564, 801
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	3 cut(s)	77, 251, 678
BfmI	CTRYAG	1 cut(s)	774
BfuI	GTATCC	1 cut(s)	667
BisI	GCNGC	4 cut(s)	184, 193, 774, 777
BlsI	GCNGC	4 cut(s)	185, 194, 775, 778
Bme1390I	CCNGG	5 cut(s)	23, 213, 218, 621, 757
Bme18I	GGWCC	2 cut(s)	617, 650
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmgT120I	GGNCC	2 cut(s)	617, 650
BmiI	GGNNCC	3 cut(s)	229, 651, 804
BmrFI	CCNGG	5 cut(s)	23, 213, 218, 621, 757
BmsI	GCATC	1 cut(s)	749
BpiI	GAAGAC	5 cut(s)	91, 196, 280, 306, 688
Bpu10I	CCTNAGC	2 cut(s)	266, 645
BpuMI	CCSGG	3 cut(s)	213, 621, 757
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	385, 780
BsaWI	WCCGGW	6 cut(s)	50, 224, 463, 614, 685, 799
BsaXI	ACNNNNNCTCC	6 cut(s)	680, 710, 841, 871, 909, 939
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	2 cut(s)	140, 725
BseAI	TCCGGA	3 cut(s)	224, 463, 614
BseBI	CCWGG	2 cut(s)	23, 218
BseDI	CCNNGG	2 cut(s)	385, 780
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	280, 659
BseNI	ACTGG	2 cut(s)	140, 725
BseRI	GAGGAG	2 cut(s)	154, 797
BseX3I	CGGCCG	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	760, 788
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	3 cut(s)	21, 183, 216
BshNI	GGYRCC	1 cut(s)	802
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	904
BslFI	GGGAC	4 cut(s)	155, 642, 649, 663
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	4 cut(s)	338, 524, 564, 801
BsmFI	GGGAC	4 cut(s)	155, 642, 649, 663
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	3 cut(s)	21, 183, 216
Bsp1286I	GDGCHC	2 cut(s)	232, 904
Bsp13I	TCCGGA	3 cut(s)	224, 463, 614
Bsp143I	GATC	4 cut(s)	66, 154, 340, 963
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	4 cut(s)	172, 184, 193, 440
BspANI	GGCC	3 cut(s)	21, 183, 216
BspCNI	CTCAG	2 cut(s)	279, 658
BspEI	TCCGGA	3 cut(s)	224, 463, 614
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	229, 651, 804
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	802
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	140, 725
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	385, 780
BssMI	GATC	4 cut(s)	66, 154, 340, 963
BssNI	GRCGYC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	385
Bst2UI	CCWGG	2 cut(s)	23, 218
Bst6I	CTCTTC	3 cut(s)	89, 667, 821
BstACI	GRCGYC	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	478, 525
BstDEI	CTNAG	4 cut(s)	88, 266, 503, 645
BstDSI	CCRYGG	1 cut(s)	385
BstEII	GGTNACC	1 cut(s)	593
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	4 cut(s)	69, 157, 343, 966
BstMAI	GTCTC	4 cut(s)	338, 524, 564, 801
BstMBI	GATC	4 cut(s)	66, 154, 340, 963
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 189, 192, 899
BstNI	CCWGG	2 cut(s)	23, 218
BstNSI	RCATGY	2 cut(s)	415, 438
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	5 cut(s)	21, 211, 216, 619, 755
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	760, 788
BstV2I	GAAGAC	5 cut(s)	91, 196, 280, 306, 688
BstZI	CGGCCG	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	667
BsuRI	GGCC	3 cut(s)	21, 183, 216
BtgI	CCRYGG	1 cut(s)	385
BtgZI	GCGATG	2 cut(s)	504, 726
BtsIMutI	CAGTG	1 cut(s)	732
Cac8I	GCNNGC	2 cut(s)	478, 525
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	617, 650
CpoI	CGGWCCG	1 cut(s)	617
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	3 cut(s)	41, 74, 133
CspI	CGGWCCG	1 cut(s)	617
CviAII	CATG	6 cut(s)	61, 386, 395, 412, 435, 654
CviQI	GTAC	3 cut(s)	41, 74, 133
DdeI	CTNAG	4 cut(s)	88, 266, 503, 645
DpnI	GATC	4 cut(s)	68, 156, 342, 965
DpnII	GATC	4 cut(s)	66, 154, 340, 963
DrdI	GACNNNNNNGTC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	793
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	2 cut(s)	181, 214
EagI	CGGCCG	1 cut(s)	181
Eam1104I	CTCTTC	3 cut(s)	89, 667, 821
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EarI	CTCTTC	3 cut(s)	89, 667, 821
EclXI	CGGCCG	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	617, 650
Eco52I	CGGCCG	1 cut(s)	181
Eco57I	CTGAAG	3 cut(s)	274, 318, 537
Eco91I	GGTNACC	1 cut(s)	593
EcoO65I	GGTNACC	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	21, 216
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	6 cut(s)	64, 389, 398, 415, 438, 657
FaiI	YATR	6 cut(s)	62, 387, 396, 413, 436, 655
FaqI	GGGAC	4 cut(s)	155, 642, 649, 663
FatI	CATG	6 cut(s)	60, 385, 394, 411, 434, 653
FauI	CCCGC	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	963
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	184, 193, 774, 777
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	4 cut(s)	184, 193, 774, 777
FspBI	CTAG	3 cut(s)	77, 251, 678
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	4 cut(s)	184, 193, 774, 777
HaeIII	GGCC	3 cut(s)	21, 183, 216
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	6 cut(s)	64, 389, 398, 415, 438, 657
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	8, 29, 221, 485, 557, 721
HphI	GGTGA	4 cut(s)	40, 712, 741, 973
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	7 cut(s)	340, 484, 499, 556, 673, 714, 977
Hpy188III	TCNNGA	6 cut(s)	61, 225, 251, 296, 464, 615
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	3 cut(s)	98, 155, 811
HpyAV	CCTTC	5 cut(s)	305, 352, 626, 756, 762
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	405, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 189, 192, 899
HpyF3I	CTNAG	4 cut(s)	88, 266, 503, 645
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	6 cut(s)	64, 389, 398, 415, 438, 657
HspAI	GCGC	1 cut(s)	324
Kpn2I	TCCGGA	3 cut(s)	224, 463, 614
Ksp22I	TGATCA	1 cut(s)	963
Kzo9I	GATC	4 cut(s)	66, 154, 340, 963
LmnI	GCTCC	4 cut(s)	214, 227, 617, 984
Lsp1109I	GCAGC	2 cut(s)	760, 788
LweI	GCATC	1 cut(s)	749
MaeI	CTAG	3 cut(s)	77, 251, 678
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	5 cut(s)	366, 380, 423, 593, 727
MalI	GATC	4 cut(s)	68, 156, 342, 965
MboI	GATC	4 cut(s)	66, 154, 340, 963
MhlI	GDGCHC	2 cut(s)	232, 904
MluCI	AATT	4 cut(s)	282, 513, 565, 928
MlyI	GAGTC	4 cut(s)	2, 23, 566, 730
MmeI	TCCRAC	2 cut(s)	297, 962
MroI	TCCGGA	3 cut(s)	224, 463, 614
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	410
MspR9I	CCNGG	5 cut(s)	23, 213, 218, 621, 757
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	23, 218
MwoI	GCNNNNNNNGC	4 cut(s)	180, 189, 192, 899
NciI	CCSGG	3 cut(s)	213, 621, 757
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	4 cut(s)	66, 154, 340, 963
NlaIII	CATG	6 cut(s)	64, 389, 398, 415, 438, 657
NlaIV	GGNNCC	3 cut(s)	229, 651, 804
NmeAIII	GCCGAG	3 cut(s)	553, 805, 854
NmuCI	GTSAC	2 cut(s)	423, 727
NspI	RCATGY	2 cut(s)	415, 438
PagI	TCATGA	1 cut(s)	60
PciI	ACATGT	2 cut(s)	411, 434
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 150
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	221, 485
PflFI	GACNNNGTC	2 cut(s)	146, 654
PfoI	TCCNGGA	1 cut(s)	755
PkrI	GCNGC	4 cut(s)	185, 194, 775, 778
PleI	GAGTC	4 cut(s)	2, 23, 565, 729
PpsI	GAGTC	4 cut(s)	2, 23, 565, 729
PscI	ACATGT	2 cut(s)	411, 434
Psp6I	CCWGG	2 cut(s)	21, 216
PspEI	GGTNACC	1 cut(s)	593
PspGI	CCWGG	2 cut(s)	21, 216
PspN4I	GGNNCC	3 cut(s)	229, 651, 804
PspPI	GGNCC	2 cut(s)	617, 650
PstI	CTGCAG	1 cut(s)	778
PsyI	GACNNNGTC	2 cut(s)	146, 654
RsaI	GTAC	3 cut(s)	42, 75, 134
RsaNI	GTAC	3 cut(s)	41, 74, 133
RseI	CAYNNNNRTG	1 cut(s)	410
Rsr2I	CGGWCCG	1 cut(s)	617
RsrII	CGGWCCG	1 cut(s)	617
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	4 cut(s)	184, 193, 774, 777
Sau3AI	GATC	4 cut(s)	66, 154, 340, 963
Sau96I	GGNCC	2 cut(s)	617, 650
SchI	GAGTC	4 cut(s)	2, 23, 566, 730
ScrFI	CCNGG	5 cut(s)	23, 213, 218, 621, 757
SduI	GDGCHC	2 cut(s)	232, 904
SfaNI	GCATC	1 cut(s)	749
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	2 cut(s)	617, 650
SmiMI	CAYNNNNRTG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	76
Sse9I	AATT	4 cut(s)	282, 513, 565, 928
SsiI	CCGC	4 cut(s)	172, 184, 193, 440
SspMI	CTAG	3 cut(s)	77, 251, 678
StyD4I	CCNGG	5 cut(s)	21, 211, 216, 619, 755
StyI	CCWWGG	1 cut(s)	385
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	150
TasI	AATT	4 cut(s)	282, 513, 565, 928
TauI	GCSGC	2 cut(s)	186, 195
TfiI	GAWTC	2 cut(s)	221, 485
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	732
TseFI	GTSAC	2 cut(s)	423, 727
TseI	GCWGC	2 cut(s)	773, 776
Tsp45I	GTSAC	2 cut(s)	423, 727
TspDTI	ATGAA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	732
Tth111I	GACNNNGTC	2 cut(s)	146, 654
VpaK11BI	GGWCC	2 cut(s)	617, 650
XapI	RAATTY	2 cut(s)	513, 565
XbaI	TCTAGA	1 cut(s)	250
XceI	RCATGY	2 cut(s)	415, 438
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	3 cut(s)	77, 251, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.