Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032339.1

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 348

Gene Structure 347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 347 bp

atgggagacacagctatcggcctcgatgactcccaggccgtacaactcaccggaaagatcatgatgatcgccgtactagtcctcttcttagtcgtcgtcttcgtcctctgcctccacctctacgccaaatggtactggtggagcgtagtggaagatcccaactcctccacccgccaaaccggccgccgacgacgccgtttcgtattcgctccgggccaggaatccgaactaccaaccctccggcgagggctcgagccttcagtcctaaagtctctgcctgtagtggtcttcagtcctcaagatttcaaagacgggttggaatgcgctgtttgtctctctgatcttgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

6.55

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	172, 184
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	243, 274
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	3 cut(s)	42, 75, 134
AgsI	TTSAA	1 cut(s)	307
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	33, 216
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	276, 338
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	19, 36, 181, 214
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	2 cut(s)	91, 280
BceAI	ACGGC	3 cut(s)	23, 56, 180
BciT130I	CCWGG	2 cut(s)	35, 218
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	2 cut(s)	276, 338
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	1 cut(s)	279
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	3 cut(s)	35, 213, 218
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	214
BmrFI	CCNGG	3 cut(s)	35, 213, 218
BpiI	GAAGAC	2 cut(s)	91, 280
BpuEI	CTTGAG	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	35, 218
BseDI	CCNNGG	1 cut(s)	33
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	181
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	4 cut(s)	21, 38, 183, 216
BsiEI	CGRYCG	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	51, 180, 212, 241
BsmAI	GTCTC	2 cut(s)	276, 338
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	21, 38, 183, 216
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	57, 66, 154, 340
BspACI	CCGC	2 cut(s)	172, 184
BspANI	GGCC	4 cut(s)	21, 38, 183, 216
BspHI	TCATGA	1 cut(s)	60
BspPI	GGATC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	4 cut(s)	57, 66, 154, 340
BssNI	GRCGYC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	35, 218
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	4 cut(s)	60, 69, 157, 343
BstMAI	GTCTC	2 cut(s)	276, 338
BstMBI	GATC	4 cut(s)	57, 66, 154, 340
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 192
BstNI	CCWGG	2 cut(s)	35, 218
BstSCI	CCNGG	3 cut(s)	33, 211, 216
BstSFI	CTRYAG	1 cut(s)	279
BstV2I	GAAGAC	2 cut(s)	91, 280
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	21, 38, 183, 216
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	214
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	41, 74, 133
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	14, 21, 38, 183, 216, 250, 256
CviKI_1	RGCY	7 cut(s)	14, 21, 38, 183, 216, 250, 256
CviQI	GTAC	3 cut(s)	41, 74, 133
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	4 cut(s)	59, 68, 156, 342
DpnII	GATC	4 cut(s)	57, 66, 154, 340
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
EclXI	CGGCCG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	252
Eco52I	CGGCCG	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	243, 274
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	33, 216
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	1 cut(s)	64
FaiI	YATR	1 cut(s)	62
FatI	CATG	1 cut(s)	60
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	184
HaeIII	GGCC	4 cut(s)	21, 38, 183, 216
HapII	CCGG	4 cut(s)	51, 180, 212, 241
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HinfI	GANTC	2 cut(s)	29, 221
HpaII	CCGG	4 cut(s)	51, 180, 212, 241
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	226, 340
Hpy188III	TCNNGA	2 cut(s)	61, 299
Hpy99I	CGWCG	3 cut(s)	98, 192, 195
HpyAV	CCTTC	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 192
HpyF3I	CTNAG	1 cut(s)	88
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	57, 66, 154, 340
LmnI	GCTCC	2 cut(s)	141, 214
MaeI	CTAG	1 cut(s)	77
MalI	GATC	4 cut(s)	59, 68, 156, 342
MboI	GATC	4 cut(s)	57, 66, 154, 340
MboII	GAAGA	4 cut(s)	76, 91, 164, 280
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	9 cut(s)	32, 92, 116, 122, 128, 175, 239, 248, 306
MspI	CCGG	4 cut(s)	51, 180, 212, 241
MspR9I	CCNGG	3 cut(s)	35, 213, 218
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	35, 218
MwoI	GCNNNNNNNGC	2 cut(s)	180, 192
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	4 cut(s)	57, 66, 154, 340
NlaIII	CATG	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	251
PagI	TCATGA	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	2 cut(s)	33, 216
PspGI	CCWGG	2 cut(s)	33, 216
PspPI	GGNCC	1 cut(s)	214
PspXI	VCTCGAGB	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	3 cut(s)	42, 75, 134
RsaNI	GTAC	3 cut(s)	41, 74, 133
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	4 cut(s)	57, 66, 154, 340
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	3 cut(s)	35, 213, 218
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	2 cut(s)	16, 120
SfcI	CTRYAG	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	251
SmlI	CTYRAG	2 cut(s)	251, 297
SmoI	CTYRAG	2 cut(s)	251, 297
SpeI	ACTAGT	1 cut(s)	76
SsiI	CCGC	2 cut(s)	172, 184
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	33, 211, 216
TaqI	TCGA	2 cut(s)	24, 252
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	251
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.