Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467879.1

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 651

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467879.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

aagtctctgcctgtagtggtcttcagtcctcaagatttcaaagacgggttggaatgcgctgtttgtctctctgatcttgcccaaggcgaaaaggccagattgctgcccaaatgtaaccatggatttcatgtagagtgcattgacatgtggtttcagtcacattcaacatgcccgctttgccggagcgccgtcgtgccggagaccgtagcgcgctctgattcctctgtttctgagcttagtgttgaaattccatcgccggctgagactttggcttctgggttctcttcagaatcacccaatttccctacaaatgtgttgttctgggggaaccagacccgggttagctccgggccgggttcgggtttggaggaagggacttcagctcaagtgccttgtccctcttcttcttctgatactagaagaccggagggaatgttggtgattgatataccgagtgagaatccaatggcatctttagcatcgccttcgccttccggcaataacaggtttgctgccgccgaggaggacttgaagtctccggtgccgacgaggttgaggtcactcaagaggttattgagccgagataggaagataaatccttgtagtccaagctcagctgttgatgctgaagcagggagggcacaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

216

Amino Acids

22.96

Weight (kDa)

5.28

Isoelectric Point (pI)

70.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	541
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	173, 516
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	4 cut(s)	7, 270, 363, 648
AfiI	CCNNNNNNNGG	2 cut(s)	337, 359
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	40, 165, 245, 532
AhdI	GACNNNNNGTC	1 cut(s)	532
AluBI	AGCT	5 cut(s)	235, 345, 383, 612, 617
AluI	AGCT	5 cut(s)	235, 345, 383, 612, 617
Alw26I	GTCTC	5 cut(s)	9, 71, 194, 257, 540
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	93, 350
ApeKI	GCWGC	2 cut(s)	103, 512
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	4 cut(s)	59, 188, 211, 213
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	4 cut(s)	337, 338, 349, 354
AsuHPI	GGTGA	2 cut(s)	285, 451
AvaI	CYCGRG	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	541
BbsI	GAAGAC	2 cut(s)	13, 427
BbvI	GCAGC	2 cut(s)	90, 499
BccI	CCATC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BcnI	CCSGG	4 cut(s)	337, 338, 349, 354
BcoDI	GTCTC	5 cut(s)	9, 71, 194, 257, 540
BfaI	CTAG	1 cut(s)	417
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	3 cut(s)	104, 513, 516
BlpI	GCTNAGC	1 cut(s)	613
BlsI	GCNGC	3 cut(s)	105, 514, 517
Bme1390I	CCNGG	4 cut(s)	337, 338, 349, 354
BmeRI	GACNNNNNGTC	1 cut(s)	532
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	329, 543
BmrFI	CCNGG	4 cut(s)	337, 338, 349, 354
BmsI	GCATC	3 cut(s)	479, 488, 613
BpiI	GAAGAC	2 cut(s)	13, 427
Bpu1102I	GCTNAGC	1 cut(s)	613
BpuEI	CTTGAG	3 cut(s)	15, 369, 548
BpuMI	CCSGG	4 cut(s)	337, 338, 349, 354
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	82, 118, 336, 519
BsaWI	WCCGGW	2 cut(s)	424, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 359
Bse118I	RCCGGY	1 cut(s)	256
BseDI	CCNNGG	4 cut(s)	82, 118, 336, 519
BseLI	CCNNNNNNNGG	2 cut(s)	337, 359
BseMII	CTCAG	3 cut(s)	222, 252, 627
BsePI	GCGCGC	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	643
BseXI	GCAGC	2 cut(s)	90, 499
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	95, 352
BshNI	GGYRCC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	9 cut(s)	181, 197, 257, 337, 348, 353, 425, 495, 539
BslFI	GGGAC	2 cut(s)	381, 388
BslI	CCNNNNNNNGG	2 cut(s)	337, 359
BsmAI	GTCTC	5 cut(s)	9, 71, 194, 257, 540
BsmFI	GGGAC	2 cut(s)	381, 388
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	2 cut(s)	95, 352
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	1 cut(s)	73
Bsp1720I	GCTNAGC	1 cut(s)	613
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	2 cut(s)	173, 516
BspANI	GGCC	2 cut(s)	95, 352
BspCNI	CTCAG	3 cut(s)	223, 253, 626
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	329, 543
BspT107I	GGYRCC	1 cut(s)	541
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	256
BssAI	RCCGGY	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	82, 118, 336, 519
BssHII	GCGCGC	1 cut(s)	209
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	2 cut(s)	82, 118
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	289, 406
BstC8I	GCNNGC	3 cut(s)	173, 211, 258
BstDEI	CTNAG	4 cut(s)	231, 236, 261, 613
BstDSI	CCRYGG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	4 cut(s)	59, 188, 211, 213
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	5 cut(s)	9, 71, 194, 257, 540
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 476, 623, 638
BstNSI	RCATGY	2 cut(s)	148, 171
BstSCI	CCNGG	4 cut(s)	335, 336, 347, 352
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	643
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	90, 499
BstV2I	GAAGAC	2 cut(s)	13, 427
BsuRI	GGCC	2 cut(s)	95, 352
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	2 cut(s)	237, 465
Cac8I	GCNNGC	3 cut(s)	173, 211, 258
CfoI	GCGC	4 cut(s)	59, 188, 211, 213
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	350
Cfr9I	CCCGGG	1 cut(s)	336
CviAII	CATG	4 cut(s)	119, 128, 145, 168
DdeI	CTNAG	4 cut(s)	231, 236, 261, 613
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	289, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	532
EarI	CTCTTC	2 cut(s)	289, 406
Eco130I	CCWWGG	2 cut(s)	82, 118
Eco31I	GGTCTC	1 cut(s)	194
Eco57I	CTGAAG	4 cut(s)	7, 270, 363, 648
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	2 cut(s)	82, 118
ErhI	CCWWGG	2 cut(s)	82, 118
FaeI	CATG	4 cut(s)	122, 131, 148, 171
FaiI	YATR	5 cut(s)	120, 129, 146, 169, 449
FaqI	GGGAC	2 cut(s)	381, 388
FatI	CATG	4 cut(s)	118, 127, 144, 167
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	104, 513, 516
Fsp4HI	GCNGC	3 cut(s)	104, 513, 516
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	4 cut(s)	58, 187, 210, 212
GluI	GCNGC	3 cut(s)	104, 513, 516
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	95, 352
HapII	CCGG	9 cut(s)	181, 197, 257, 337, 348, 353, 425, 495, 539
HhaI	GCGC	4 cut(s)	59, 188, 211, 213
Hin1II	CATG	4 cut(s)	122, 131, 148, 171
Hin6I	GCGC	4 cut(s)	57, 186, 209, 211
HinP1I	GCGC	4 cut(s)	57, 186, 209, 211
HinfI	GANTC	3 cut(s)	218, 290, 460
HpaII	CCGG	9 cut(s)	181, 197, 257, 337, 348, 353, 425, 495, 539
HphI	GGTGA	2 cut(s)	285, 451
Hpy188I	TCNGA	5 cut(s)	73, 217, 232, 289, 412
Hpy188III	TCNNGA	2 cut(s)	32, 565
Hpy99I	CGWCG	2 cut(s)	194, 550
HpyAV	CCTTC	3 cut(s)	365, 495, 501
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 476, 623, 638
HpyF3I	CTNAG	4 cut(s)	231, 236, 261, 613
Hsp92II	CATG	4 cut(s)	122, 131, 148, 171
HspAI	GCGC	4 cut(s)	57, 186, 209, 211
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	183, 350
Lsp1109I	GCAGC	2 cut(s)	90, 499
LweI	GCATC	3 cut(s)	479, 488, 613
MaeI	CTAG	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	113, 156, 558
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	7 cut(s)	13, 276, 393, 396, 399, 432, 601
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	2 cut(s)	246, 298
MmeI	TCCRAC	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	256
MslI	CAYNNNNRTG	1 cut(s)	143
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	9 cut(s)	181, 197, 257, 337, 348, 353, 425, 495, 539
MspR9I	CCNGG	4 cut(s)	337, 338, 349, 354
Mva1269I	GAATGC	1 cut(s)	59
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	4 cut(s)	177, 476, 623, 638
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	4 cut(s)	337, 338, 349, 354
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	4 cut(s)	122, 131, 148, 171
NlaIV	GGNNCC	2 cut(s)	329, 543
NmeAIII	GCCGAG	2 cut(s)	544, 605
NmuCI	GTSAC	2 cut(s)	156, 558
NspI	RCATGY	2 cut(s)	148, 171
PauI	GCGCGC	1 cut(s)	209
PciI	ACATGT	1 cut(s)	144
PctI	GAATGC	1 cut(s)	59
PdiI	GCCGGC	1 cut(s)	258
PfeI	GAWTC	3 cut(s)	218, 290, 460
PkrI	GCNGC	3 cut(s)	105, 514, 517
PscI	ACATGT	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	329, 543
PspPI	GGNCC	1 cut(s)	350
PteI	GCGCGC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	617
RseI	CAYNNNNRTG	1 cut(s)	143
SatI	GCNGC	3 cut(s)	104, 513, 516
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	350
ScrFI	CCNGG	4 cut(s)	337, 338, 349, 354
SduI	GDGCHC	1 cut(s)	643
SetI	ASST	9 cut(s)	237, 347, 385, 509, 554, 560, 572, 614, 619
SfaNI	GCATC	3 cut(s)	479, 488, 613
SfcI	CTRYAG	1 cut(s)	12
SmaI	CCCGGG	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	3 cut(s)	30, 384, 563
SmoI	CTYRAG	3 cut(s)	30, 384, 563
Sse9I	AATT	2 cut(s)	246, 298
SsiI	CCGC	2 cut(s)	173, 516
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	4 cut(s)	335, 336, 347, 352
StyI	CCWWGG	2 cut(s)	82, 118
TaaI	ACNGT	1 cut(s)	205
TasI	AATT	2 cut(s)	246, 298
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	218, 290, 460
TseFI	GTSAC	2 cut(s)	156, 558
TseI	GCWGC	2 cut(s)	103, 512
Tsp45I	GTSAC	2 cut(s)	156, 558
TspDTI	ATGAA	1 cut(s)	116
TspMI	CCCGGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	246
XceI	RCATGY	2 cut(s)	148, 171
XmaI	CCCGGG	1 cut(s)	336
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.