Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Forward (+)

2275546 .. 2277415

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G030500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACAATGGGAGAATCATCCCCTTTCGGTCGAACACTAGACGACTCAAACGCCGTACAGCTCACAGGAAAGATCATGATGATCGCCGTTCTGGTTCTCTTCTTAGTAGTTGTCTTCGTCCTCTGCCTTCATCTCTACGCCAAATGGTACTGGTGGCGCGCCGATGACGACACCTCCGCTAACAACCAATCTCGCCGCCGCCGCCGCCGCTTCGTTTTCGCCCCCGGCCAGGACACAGTTGCCACCGTGAGAAAAGGGCTCGACCCTCTGGTCCTCAAGTCCCTGCCAGTGCTGGTGTTTCCTTCAGAGGACTTCAAAGATGGCCTTGAATGTGCAGTTTGTCTCTCTGAGCTTGTTCAGGGCGAGAAGGCCAGGCTGCTTCCGAAATGCAGCCATGGCTTCCATGTTGATTGCATTGACATGTGGTTTCAGTCTCACTCCACGTGTCCAATCTGTCGTAACCCTGTTGCTCCTGAGAGCTCTGTTGATTCTGGTGCTGCTGGTTCTTCATCTGCATTGGCAGAGAGTGATAGTGTTCAAATTCTATCACCAGCTGAGAGTTTGGCATCTGGGTTTTCAATAGAGGCTCCAAATTTCCCAACAAATGTGTTGTTTTGGGGGAACCAGACCCAGGTGAGCGCTGGACCTGGTTCTGGTTTAGAAGAAGGCCCTTCATCACCACCCATGTGCCCATCTTCTTCATCTTCACCTTCATCTTCATCTGCTATTAGTAGGCCAGATGGGATGTTGGTGATTGATATACCAAGTCAAACCTCATTGGCATCACCTTCGCCTTCCCCTTCGCCTTCCGGCAATAGGTTCGCCGCCGATGAGGACTTGAAGTCTCCGGCTACGACGAGGTTGAGGTCACTCAAGAGGCTCTTGAGCAGAGATAGGAGGATAAGTCCCTGCAGTCCTAGTTCTGTTGATGTTGAACAAGGAGGAGGGAGAGGACAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

321

Amino Acids

34.21

Weight (kDa)

5.86

Isoelectric Point (pI)

73.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccII	CGCG	1 cut(s)	159
AciI	CCGC	7 cut(s)	177, 196, 199, 202, 205, 208, 825
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	540, 592
AcuI	CTGAAG	1 cut(s)	288
AcvI	CACGTG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	57, 149
AfeI	AGCGCT	1 cut(s)	640
AfiI	CCNNNNNNNGG	4 cut(s)	229, 631, 653, 816
AflIII	ACRYGT	2 cut(s)	420, 443
AgsI	TTSAA	6 cut(s)	316, 329, 539, 579, 841, 935
AhdI	GACNNNNNGTC	1 cut(s)	841
AjnI	CCWGG	4 cut(s)	228, 371, 630, 646
AleI	CACNNNNGTG	1 cut(s)	685
AluBI	AGCT	4 cut(s)	61, 352, 480, 554
AluI	AGCT	4 cut(s)	61, 352, 480, 554
Alw21I	GWGCWC	1 cut(s)	482
Alw26I	GTCTC	3 cut(s)	347, 438, 849
Aor51HI	AGCGCT	1 cut(s)	640
AoxI	GGCC	5 cut(s)	226, 322, 369, 667, 734
ApeKI	GCWGC	3 cut(s)	376, 390, 497
ApoI	RAATTY	2 cut(s)	540, 592
AscI	GGCGCGCC	1 cut(s)	157
AspLEI	GCGC	3 cut(s)	159, 161, 641
AspS9I	GGNCC	3 cut(s)	271, 644, 668
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	6 cut(s)	540, 646, 669, 699, 763, 777
AvaII	GGWCC	2 cut(s)	271, 644
BaeGI	GKGCMC	1 cut(s)	692
BanII	GRGCYC	2 cut(s)	261, 482
BbrPI	CACGTG	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	363, 402, 484
BccI	CCATC	3 cut(s)	314, 700, 734
BceAI	ACGGC	2 cut(s)	38, 71
BcgI	CGANNNNNNTGC	4 cut(s)	771, 802, 805, 836
BciT130I	CCWGG	4 cut(s)	230, 373, 632, 648
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	347, 438, 849
BfaI	CTAG	2 cut(s)	38, 918
BfmI	CTRYAG	1 cut(s)	910
BfoI	RGCGCY	1 cut(s)	642
BisI	GCNGC	9 cut(s)	196, 199, 202, 205, 208, 377, 391, 498, 825
BlsI	GCNGC	9 cut(s)	197, 200, 203, 206, 209, 378, 392, 499, 826
Bme1390I	CCNGG	5 cut(s)	225, 230, 373, 632, 648
Bme18I	GGWCC	2 cut(s)	271, 644
BmeRI	GACNNNNNGTC	1 cut(s)	841
BmgT120I	GGNCC	3 cut(s)	271, 644, 668
BmiI	GGNNCC	2 cut(s)	588, 623
BmrFI	CCNGG	5 cut(s)	225, 230, 373, 632, 648
BmsI	GCATC	2 cut(s)	575, 791
BpiI	GAAGAC	1 cut(s)	106
BpuEI	CTTGAG	3 cut(s)	260, 857, 904
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	223, 394, 630
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 889, 919
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 631, 653, 816
Bse1I	ACTGG	2 cut(s)	155, 287
BseBI	CCWGG	4 cut(s)	230, 373, 632, 648
BseDI	CCNNGG	3 cut(s)	223, 394, 630
BseGI	GGATG	2 cut(s)	17, 750
BseLI	CCNNNNNNNGG	4 cut(s)	229, 631, 653, 816
BseMII	CTCAG	3 cut(s)	339, 465, 546
BseNI	ACTGG	2 cut(s)	155, 287
BsePI	GCGCGC	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	957
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	3 cut(s)	363, 402, 484
BsgI	GTGCAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	5 cut(s)	228, 324, 371, 669, 736
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	482
BsiSI	CCGG	3 cut(s)	225, 810, 848
BslFI	GGGAC	2 cut(s)	265, 891
BslI	CCNNNNNNNGG	4 cut(s)	229, 631, 653, 816
BsmAI	GTCTC	3 cut(s)	347, 438, 849
BsmFI	GGGAC	2 cut(s)	265, 891
BsnI	GGCC	5 cut(s)	228, 324, 371, 669, 736
Bsp1286I	GDGCHC	3 cut(s)	261, 482, 692
Bsp143I	GATC	2 cut(s)	72, 81
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	7 cut(s)	177, 196, 199, 202, 205, 208, 825
BspANI	GGCC	5 cut(s)	228, 324, 371, 669, 736
BspCNI	CTCAG	3 cut(s)	340, 466, 547
BspFNI	CGCG	1 cut(s)	159
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	588, 623
BspMAI	CTGCAG	1 cut(s)	914
BsrI	ACTGG	2 cut(s)	155, 287
BssECI	CCNNGG	3 cut(s)	223, 394, 630
BssHII	GCGCGC	1 cut(s)	157
BssMI	GATC	2 cut(s)	72, 81
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	4 cut(s)	230, 373, 632, 648
Bst4CI	ACNGT	2 cut(s)	238, 247
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	4 cut(s)	103, 348, 474, 555
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	17, 750
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	3 cut(s)	159, 161, 641
BstKTI	GATC	2 cut(s)	75, 84
BstMAI	GTCTC	3 cut(s)	347, 438, 849
BstMBI	GATC	2 cut(s)	72, 81
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 204, 207, 396
BstNI	CCWGG	4 cut(s)	230, 373, 632, 648
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	5 cut(s)	223, 228, 371, 630, 646
BstSFI	CTRYAG	1 cut(s)	910
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	363, 402, 484
BstV2I	GAAGAC	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	228, 324, 371, 669, 736
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	17, 750
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	159
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	3 cut(s)	159, 161, 641
Cfr13I	GGNCC	3 cut(s)	271, 644, 668
CsiI	ACCWGGT	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	56, 148
CviAII	CATG	5 cut(s)	76, 395, 404, 421, 685
CviQI	GTAC	2 cut(s)	56, 148
DdeI	CTNAG	4 cut(s)	103, 348, 474, 555
DpnI	GATC	2 cut(s)	74, 83
DpnII	GATC	2 cut(s)	72, 81
DrdI	GACNNNNNNGTC	1 cut(s)	269
DriI	GACNNNNNGTC	1 cut(s)	841
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	480
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	2 cut(s)	261, 482
Eco47I	GGWCC	2 cut(s)	271, 644
Eco47III	AGCGCT	1 cut(s)	640
Eco53kI	GAGCTC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	288
Eco72I	CACGTG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	4 cut(s)	228, 371, 630, 646
EcoT14I	CCWWGG	1 cut(s)	394
EcoT38I	GRGCYC	2 cut(s)	261, 482
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	5 cut(s)	79, 398, 407, 424, 688
FaiI	YATR	6 cut(s)	77, 396, 405, 422, 686, 761
FalI	AAGNNNNNCTT	4 cut(s)	309, 341, 866, 898
FaqI	GGGAC	2 cut(s)	265, 891
FatI	CATG	5 cut(s)	75, 394, 403, 420, 684
Fnu4HI	GCNGC	9 cut(s)	196, 199, 202, 205, 208, 377, 391, 498, 825
FokI	GGATG	2 cut(s)	4, 757
FriOI	GRGCYC	2 cut(s)	261, 482
Fsp4HI	GCNGC	9 cut(s)	196, 199, 202, 205, 208, 377, 391, 498, 825
FspBI	CTAG	2 cut(s)	38, 918
GlaI	GCGC	3 cut(s)	158, 160, 640
GluI	GCNGC	9 cut(s)	196, 199, 202, 205, 208, 377, 391, 498, 825
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	5 cut(s)	228, 324, 371, 669, 736
HapII	CCGG	3 cut(s)	225, 810, 848
HhaI	GCGC	3 cut(s)	159, 161, 641
Hin1II	CATG	5 cut(s)	79, 398, 407, 424, 688
Hin6I	GCGC	3 cut(s)	157, 159, 639
HinP1I	GCGC	3 cut(s)	157, 159, 639
HinfI	GANTC	3 cut(s)	14, 44, 488
HpaII	CCGG	3 cut(s)	225, 810, 848
HphI	GGTGA	6 cut(s)	540, 646, 669, 699, 763, 777
Hpy188I	TCNGA	3 cut(s)	307, 349, 384
Hpy188III	TCNNGA	4 cut(s)	76, 473, 874, 883
Hpy99I	CGWCG	1 cut(s)	859
HpyCH4III	ACNGT	2 cut(s)	238, 247
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	5 cut(s)	335, 390, 414, 515, 912
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 204, 207, 396
HpyF3I	CTNAG	4 cut(s)	103, 348, 474, 555
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	5 cut(s)	79, 398, 407, 424, 688
HspAI	GCGC	3 cut(s)	157, 159, 639
Kzo9I	GATC	2 cut(s)	72, 81
LmnI	GCTCC	2 cut(s)	475, 592
Lsp1109I	GCAGC	3 cut(s)	363, 402, 484
LweI	GCATC	2 cut(s)	575, 791
MabI	ACCWGGT	1 cut(s)	646
MaeI	CTAG	2 cut(s)	38, 918
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	458, 867
MalI	GATC	2 cut(s)	74, 83
MboI	GATC	2 cut(s)	72, 81
MboII	GAAGA	8 cut(s)	91, 106, 498, 674, 687, 690, 696, 708
MhlI	GDGCHC	3 cut(s)	261, 482, 692
MluCI	AATT	2 cut(s)	540, 592
MlyI	GAGTC	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	419, 685
MspA1I	CMGCKG	1 cut(s)	554
MspI	CCGG	3 cut(s)	225, 810, 848
MspR9I	CCNGG	5 cut(s)	225, 230, 373, 632, 648
MvaI	CCWGG	4 cut(s)	230, 373, 632, 648
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	201, 204, 207, 396
NciI	CCSGG	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	72, 81
NlaIII	CATG	5 cut(s)	79, 398, 407, 424, 688
NlaIV	GGNNCC	2 cut(s)	588, 623
NmuCI	GTSAC	1 cut(s)	867
NspI	RCATGY	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	685
PagI	TCATGA	1 cut(s)	75
PalAI	GGCGCGCC	1 cut(s)	157
PauI	GCGCGC	1 cut(s)	157
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	14, 488
PkrI	GCNGC	9 cut(s)	197, 200, 203, 206, 209, 378, 392, 499, 826
PleI	GAGTC	1 cut(s)	38
PmaCI	CACGTG	1 cut(s)	444
PmlI	CACGTG	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	444
PscI	ACATGT	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	482
Psp6I	CCWGG	4 cut(s)	228, 371, 630, 646
PspCI	CACGTG	1 cut(s)	444
PspGI	CCWGG	4 cut(s)	228, 371, 630, 646
PspN4I	GGNNCC	2 cut(s)	588, 623
PspPI	GGNCC	3 cut(s)	271, 644, 668
PstI	CTGCAG	1 cut(s)	914
PteI	GCGCGC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	57, 149
RsaNI	GTAC	2 cut(s)	56, 148
RseI	CAYNNNNRTG	2 cut(s)	419, 685
SacI	GAGCTC	1 cut(s)	482
SatI	GCNGC	9 cut(s)	196, 199, 202, 205, 208, 377, 391, 498, 825
Sau3AI	GATC	2 cut(s)	72, 81
Sau96I	GGNCC	3 cut(s)	271, 644, 668
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	5 cut(s)	225, 230, 373, 632, 648
SduI	GDGCHC	3 cut(s)	261, 482, 692
SexAI	ACCWGGT	1 cut(s)	646
SfaNI	GCATC	2 cut(s)	575, 791
SfcI	CTRYAG	1 cut(s)	910
SgsI	GGCGCGCC	1 cut(s)	157
SinI	GGWCC	2 cut(s)	271, 644
SmiMI	CAYNNNNRTG	2 cut(s)	419, 685
SmlI	CTYRAG	3 cut(s)	275, 872, 883
SmoI	CTYRAG	3 cut(s)	275, 872, 883
Sse9I	AATT	2 cut(s)	540, 592
SsiI	CCGC	7 cut(s)	177, 196, 199, 202, 205, 208, 825
SspMI	CTAG	2 cut(s)	38, 918
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	5 cut(s)	223, 228, 371, 630, 646
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	238, 247
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	2 cut(s)	31, 261
TaqII	GACCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	540, 592
TauI	GCSGC	6 cut(s)	198, 201, 204, 207, 210, 827
TfiI	GAWTC	2 cut(s)	14, 488
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	867
TseI	GCWGC	3 cut(s)	376, 390, 497
Tsp45I	GTSAC	1 cut(s)	867
TspDTI	ATGAA	6 cut(s)	119, 498, 663, 690, 702, 708
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	271, 644
XapI	RAATTY	2 cut(s)	540, 592
XceI	RCATGY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	638
XspI	CTAG	2 cut(s)	38, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.