Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Reverse (-)

65747122 .. 65748822

Gene Structure 1701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51768

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGAGACACAGCTATCGGCCTCGATGACTCCCAGGCCGTACAACTCACCGGAAAGATCATGATGATCGCCGTACTAGTCCTCTTCTTAGTCGTCGTCTTCGTCCTCTGCCTCCACCTCTACGCCAAATGGTACTGGTGGAGCGTAGTGGAAGATCCCAACTCCTCCACCCGCCAAACCGGCCGCCGACGACGCCGTTTCGTATTCGCTCCGGGCCAGGAATCCGAACTACCAACCCTCCGGCGAGGGCTCGAACCTTCAGTCCTTAAGTCTCTGCCTGTAGTGGTCTTCAGTCCTCAAGATTTCAAAGACGGGTTGGAATGCGCTGTTTGTCTCTCTGATCTTGCCCAAGGCGAAAAGGCCAGATTGCTTCCCAAATGTAACCATGGATTTCATGTCGAGTGCATTGACATGTGGTTTCAGTCACATTCAACATGCCCGCTTTGCCGGAGCGCCGTCGTGCCGGAGACCGTAGCGCGCTCTGATTCCTCTGTTTCTGAGCTTAGTGTTGAAATTCCATCGCCGGCTGAGACTTTGGCTTCTGGGTTCTCTTCAGAATCACCCAATTTCCCTACAAATGTGTTGTTCTGGGGAACCAGACCCGGGTTAGCTCCGGGCCGGGTTCGGGTTTGGAGGAAGGGACTTCAGCTCAAGTGCCTTGTCCCTCTTCTTCTTCTGATACTAGAAGACCGGAGGGAATGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

26.26

Weight (kDa)

7.55

Isoelectric Point (pI)

68.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	107 - 150	5.7e-14	Ring finger domain
zf-RING_11	PF17123	107 - 136	7.4e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	107 - 149	4.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	108 - 149	6.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	116 - 150	3.9e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	478
AciI	CCGC	3 cut(s)	172, 184, 440
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	4 cut(s)	243, 274, 537, 629
AcyI	GRCGYC	1 cut(s)	193
AfaI	GTAC	3 cut(s)	42, 75, 134
AfiI	CCNNNNNNNGG	2 cut(s)	603, 625
AflII	CTTAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	3 cut(s)	307, 432, 512
AhlI	ACTAGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	33, 216
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	4 cut(s)	14, 502, 611, 649
AluI	AGCT	4 cut(s)	14, 502, 611, 649
Alw26I	GTCTC	4 cut(s)	276, 338, 461, 524
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	6 cut(s)	19, 36, 181, 214, 360, 616
ApoI	RAATTY	1 cut(s)	513
ArsI	GACNNNNNNTTYG	2 cut(s)	246, 278
AspLEI	GCGC	4 cut(s)	326, 455, 478, 480
AspS9I	GGNCC	2 cut(s)	214, 616
AsuC2I	CCSGG	5 cut(s)	213, 603, 604, 615, 620
AsuHPI	GGTGA	2 cut(s)	40, 552
AvaI	CYCGRG	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	3 cut(s)	91, 280, 693
BccI	CCATC	1 cut(s)	526
BceAI	ACGGC	4 cut(s)	23, 56, 180, 440
BciT130I	CCWGG	2 cut(s)	35, 218
BcnI	CCSGG	5 cut(s)	213, 603, 604, 615, 620
BcoDI	GTCTC	4 cut(s)	276, 338, 461, 524
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	2 cut(s)	77, 683
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	456
BfrI	CTTAAG	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	184
BlsI	GCNGC	1 cut(s)	185
Bme1390I	CCNGG	7 cut(s)	35, 213, 218, 603, 604, 615, 620
BmeT110I	CYCGRG	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	214, 616
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	7 cut(s)	35, 213, 218, 603, 604, 615, 620
BpiI	GAAGAC	3 cut(s)	91, 280, 693
BpuEI	CTTGAG	2 cut(s)	282, 635
BpuMI	CCSGG	5 cut(s)	213, 603, 604, 615, 620
BsaHI	GRCGYC	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	33, 349, 385, 602
BsaWI	WCCGGW	2 cut(s)	50, 690
BsaXI	ACNNNNNCTCC	3 cut(s)	222, 252, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 625
Bse118I	RCCGGY	2 cut(s)	179, 523
Bse1I	ACTGG	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	35, 218
BseDI	CCNNGG	4 cut(s)	33, 349, 385, 602
BseLI	CCNNNNNNNGG	2 cut(s)	603, 625
BseMII	CTCAG	2 cut(s)	489, 519
BseNI	ACTGG	1 cut(s)	140
BsePI	GCGCGC	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	154
BseX3I	CGGCCG	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	478
Bsh1285I	CGRYCG	1 cut(s)	184
BshFI	GGCC	6 cut(s)	21, 38, 183, 216, 362, 618
BsiEI	CGRYCG	1 cut(s)	184
BsiHKCI	CYCGRG	1 cut(s)	602
BslFI	GGGAC	2 cut(s)	647, 654
BslI	CCNNNNNNNGG	2 cut(s)	603, 625
BsmAI	GTCTC	4 cut(s)	276, 338, 461, 524
BsmFI	GGGAC	2 cut(s)	647, 654
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	6 cut(s)	21, 38, 183, 216, 362, 618
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	57, 66, 154, 340
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	3 cut(s)	172, 184, 440
BspANI	GGCC	6 cut(s)	21, 38, 183, 216, 362, 618
BspCNI	CTCAG	2 cut(s)	490, 520
BspFNI	CGCG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	149
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	179, 523
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	2 cut(s)	179, 523
BssECI	CCNNGG	4 cut(s)	33, 349, 385, 602
BssHII	GCGCGC	1 cut(s)	476
BssMI	GATC	4 cut(s)	57, 66, 154, 340
BssNI	GRCGYC	1 cut(s)	193
BssT1I	CCWWGG	2 cut(s)	349, 385
Bst2UI	CCWGG	2 cut(s)	35, 218
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	3 cut(s)	89, 556, 672
BstACI	GRCGYC	1 cut(s)	193
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	3 cut(s)	440, 478, 525
BstDEI	CTNAG	4 cut(s)	88, 498, 503, 528
BstDSI	CCRYGG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	478
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	4 cut(s)	326, 455, 478, 480
BstKTI	GATC	4 cut(s)	60, 69, 157, 343
BstMAI	GTCTC	4 cut(s)	276, 338, 461, 524
BstMBI	GATC	4 cut(s)	57, 66, 154, 340
BstMCI	CGRYCG	1 cut(s)	184
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 192, 444
BstNI	CCWGG	2 cut(s)	35, 218
BstNSI	RCATGY	2 cut(s)	415, 438
BstSCI	CCNGG	7 cut(s)	33, 211, 216, 601, 602, 613, 618
BstSFI	CTRYAG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	478
BstV2I	GAAGAC	3 cut(s)	91, 280, 693
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BstZI	CGGCCG	1 cut(s)	181
BsuRI	GGCC	6 cut(s)	21, 38, 183, 216, 362, 618
BtgI	CCRYGG	1 cut(s)	385
BtgZI	GCGATG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	440, 478, 525
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	4 cut(s)	326, 455, 478, 480
Cfr10I	RCCGGY	2 cut(s)	179, 523
Cfr13I	GGNCC	2 cut(s)	214, 616
Cfr9I	CCCGGG	1 cut(s)	602
CseI	GACGC	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	41, 74, 133
CviAII	CATG	5 cut(s)	61, 386, 395, 412, 435
CviQI	GTAC	3 cut(s)	41, 74, 133
DdeI	CTNAG	4 cut(s)	88, 498, 503, 528
DpnI	GATC	4 cut(s)	59, 68, 156, 342
DpnII	GATC	4 cut(s)	57, 66, 154, 340
EaeI	YGGCCR	1 cut(s)	181
EagI	CGGCCG	1 cut(s)	181
Eam1104I	CTCTTC	3 cut(s)	89, 556, 672
EarI	CTCTTC	3 cut(s)	89, 556, 672
EclXI	CGGCCG	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	349, 385
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	461
Eco52I	CGGCCG	1 cut(s)	181
Eco57I	CTGAAG	4 cut(s)	243, 274, 537, 629
Eco88I	CYCGRG	1 cut(s)	602
EcoRII	CCWGG	2 cut(s)	33, 216
EcoT14I	CCWWGG	2 cut(s)	349, 385
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	2 cut(s)	349, 385
FaeI	CATG	5 cut(s)	64, 389, 398, 415, 438
FaiI	YATR	5 cut(s)	62, 387, 396, 413, 436
FaqI	GGGAC	2 cut(s)	647, 654
FatI	CATG	5 cut(s)	60, 385, 394, 411, 434
FauI	CCCGC	2 cut(s)	179, 447
Fnu4HI	GCNGC	1 cut(s)	184
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	184
FspBI	CTAG	2 cut(s)	77, 683
GlaI	GCGC	4 cut(s)	325, 454, 477, 479
GluI	GCNGC	1 cut(s)	184
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	6 cut(s)	21, 38, 183, 216, 362, 618
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	4 cut(s)	326, 455, 478, 480
Hin1I	GRCGYC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	64, 389, 398, 415, 438
Hin6I	GCGC	4 cut(s)	324, 453, 476, 478
HinP1I	GCGC	4 cut(s)	324, 453, 476, 478
HinfI	GANTC	4 cut(s)	29, 221, 485, 557
HphI	GGTGA	2 cut(s)	40, 552
Hpy188I	TCNGA	6 cut(s)	226, 340, 484, 499, 556, 678
Hpy188III	TCNNGA	2 cut(s)	61, 299
Hpy99I	CGWCG	4 cut(s)	98, 192, 195, 461
HpyAV	CCTTC	2 cut(s)	267, 631
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	1 cut(s)	405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 192, 444
HpyF3I	CTNAG	4 cut(s)	88, 498, 503, 528
Hsp92I	GRCGYC	1 cut(s)	193
Hsp92II	CATG	5 cut(s)	64, 389, 398, 415, 438
HspAI	GCGC	4 cut(s)	324, 453, 476, 478
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	57, 66, 154, 340
LmnI	GCTCC	4 cut(s)	141, 214, 450, 616
MaeI	CTAG	2 cut(s)	77, 683
MaeIII	GTNAC	2 cut(s)	380, 423
MalI	GATC	4 cut(s)	59, 68, 156, 342
MboI	GATC	4 cut(s)	57, 66, 154, 340
MboII	GAAGA	9 cut(s)	76, 91, 164, 280, 543, 659, 662, 665, 698
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	513, 565
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	297
MroNI	GCCGGC	1 cut(s)	523
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	7 cut(s)	35, 213, 218, 603, 604, 615, 620
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	2 cut(s)	35, 218
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	3 cut(s)	180, 192, 444
NaeI	GCCGGC	1 cut(s)	525
NciI	CCSGG	5 cut(s)	213, 603, 604, 615, 620
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	4 cut(s)	57, 66, 154, 340
NgoMIV	GCCGGC	1 cut(s)	523
NlaIII	CATG	5 cut(s)	64, 389, 398, 415, 438
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	423
NspI	RCATGY	2 cut(s)	415, 438
PagI	TCATGA	1 cut(s)	60
PauI	GCGCGC	1 cut(s)	476
PciI	ACATGT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	221, 485, 557
PkrI	GCNGC	1 cut(s)	185
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
PscI	ACATGT	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	33, 216
PspGI	CCWGG	2 cut(s)	33, 216
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	214, 616
PsuI	RGATCY	1 cut(s)	154
PteI	GCGCGC	1 cut(s)	476
RsaI	GTAC	3 cut(s)	42, 75, 134
RsaNI	GTAC	3 cut(s)	41, 74, 133
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	184
Sau3AI	GATC	4 cut(s)	57, 66, 154, 340
Sau96I	GGNCC	2 cut(s)	214, 616
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	7 cut(s)	35, 213, 218, 603, 604, 615, 620
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	6 cut(s)	16, 120, 259, 504, 613, 651
SfcI	CTRYAG	1 cut(s)	279
SmaI	CCCGGG	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	266, 297, 650
SmoI	CTYRAG	3 cut(s)	266, 297, 650
SpeI	ACTAGT	1 cut(s)	76
Sse9I	AATT	2 cut(s)	513, 565
SsiI	CCGC	3 cut(s)	172, 184, 440
SspMI	CTAG	2 cut(s)	77, 683
StyD4I	CCNGG	7 cut(s)	33, 211, 216, 601, 602, 613, 618
StyI	CCWWGG	2 cut(s)	349, 385
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	3 cut(s)	24, 252, 399
TasI	AATT	2 cut(s)	513, 565
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	3 cut(s)	221, 485, 557
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	1 cut(s)	383
TspMI	CCCGGG	1 cut(s)	602
Vha464I	CTTAAG	1 cut(s)	266
XapI	RAATTY	1 cut(s)	513
XceI	RCATGY	2 cut(s)	415, 438
XmaI	CCCGGG	1 cut(s)	602
XspI	CTAG	2 cut(s)	77, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.