Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011230

Physical Location & Seq

Genomic Coordinates Forward (+)

27225665 .. 27227545

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGACGATAATAGATCTACTCATAGCTCAATGTTCGGTGACCTATCAACAGAAGAGGTCACAAGTAAGATCATTCTCACAGCAATCATTGTTCTATTCATGGCGGTTCTGTTCGTCCTTATCCTCCATCTATACGCCAAACTCTACTGGTGGAGAATAGATCAGCTCCAACAGCAACAGCAACAACAACAGCAAGAGCAAGAGCAAGAAGAAGACCAATCATCCATTGCTCCACCTGTAGTCACTCGCCGTCAGCGACGTCGTTTCATCTTCGTCCCAGGCCAAGACGCTCTAAGCAACACTGGACTAACCTCTTTTGAACTTAGTTCCTTACCAATTGTGTTTTTCAGACAAGATAGTTGCAAAGATGGTTTGGAATGCTCTATTTGTTTGTCTGAGCTTGTTAAAGGAGATAAAGCTAGGCTGCTTCCAAAGTGTAACCATAGCTTCCATGTTGAGTGTATTGACATGTGGTTTCAGTCTCACTCTACTTGTCCGATTTGTAGAAACACTGTTCTTGGTCCTGAGCAAGCTAGCTCAAAGAGAGTTGAACAAGTTCCAGACAATGCAGAAAATGCTGGTACCACCAATAACAACCATGATGCTTTGTCTCAACTTTCAACTTCTTCTCCAGAATTTCCCACCAATGTCTTGGTATGGGGTCGTCAGGATCAAGTTAGTACCGGAAACACCAATGTTGGGACTCAAGAAGACGGTGCTGCTGGTAATGGTGCTTCTCAGAGTCAAGAAGCTGTTGTTCTGGATATCAGCGATTCTTCCAGTAGAAATCATAATGTATCATCTTCGTCGTCATCTATGAGGTTTATTGTTGAGGAGGAAGAAGCAAAATCTCCAATGACAACGAGGTTGAGGTCCTTAAGGAGGTTTCTGAGCAGAGACAAGAGAGTGGGTTGTAGCAATAGTAGTACTAGTAATAGTAGCAGCTCCAATGCTGTTGCTTCTGTTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

324

Amino Acids

35.94

Weight (kDa)

5.32

Isoelectric Point (pI)

69.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	126 - 169	1.8e-14	Ring finger domain
zf-RING_11	PF17123	126 - 155	5.1e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	126 - 168	5.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	127 - 168	4e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	127 - 166	6.7e-06	RING-type zinc-finger
zf-rbx1	PF12678	134 - 169	1.4e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53820 AT1G72310
fragaria_vesca	FvH4_6g35980
malus_domestica	MD09G1172100.v1.1 MD17G1154800.v1.1
prunus_persica	Prupe.3G030500_v2.0.a1
pyrus_communis	pycom09g08970 pycom17g14760
rosa_chinensis	RchiOBHm_Chr2g0148101
rosa_laevigata	RLG00000020313
rosa_multiflora	Rmu_co8467879.1_g000001 Rmu_sc0001516.1_g000036 Rmu_sc0032339.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099150
rosa_rugosa	Rorug02G0403500
rosa_samantha	Rh2AG461300 Rh2BG475100 Rh2CG448400 Rh2DG483700
rosa_wichuraiana	Rw2G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	262
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	2 cut(s)	678, 962
AcsI	RAATTY	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	259
AfaI	GTAC	3 cut(s)	583, 682, 928
AfiI	CCNNNNNNNGG	2 cut(s)	699, 882
AflII	CTTAAG	1 cut(s)	877
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	320, 551, 621
AhlI	ACTAGT	1 cut(s)	929
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	9 cut(s)	27, 166, 400, 419, 447, 533, 537, 752, 945
AluI	AGCT	9 cut(s)	27, 166, 400, 419, 447, 533, 537, 752, 945
Alw26I	GTCTC	3 cut(s)	486, 615, 891
AlwI	GGATC	2 cut(s)	678, 962
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	424, 719, 942
ApoI	RAATTY	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	555
Asp718I	GGTACC	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	521, 873
AsuHPI	GGTGA	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	533
AvaII	GGWCC	2 cut(s)	521, 873
BanI	GGYRCC	1 cut(s)	581
BarI	GAAGNNNNNNTAC	2 cut(s)	718, 750
BbsI	GAAGAC	2 cut(s)	219, 717
BbvI	GCAGC	3 cut(s)	411, 706, 954
BccI	CCATC	2 cut(s)	135, 362
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	3 cut(s)	486, 615, 891
BcuI	ACTAGT	1 cut(s)	929
BfaI	CTAG	3 cut(s)	420, 534, 930
BfmI	CTRYAG	1 cut(s)	237
BfrI	CTTAAG	1 cut(s)	877
BglII	AGATCT	1 cut(s)	14
BisI	GCNGC	3 cut(s)	425, 720, 943
BlsI	GCNGC	3 cut(s)	426, 721, 944
BmcAI	AGTACT	1 cut(s)	928
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	2 cut(s)	521, 873
BmgT120I	GGNCC	2 cut(s)	521, 873
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	592
BmtI	GCTAGC	1 cut(s)	537
BpiI	GAAGAC	2 cut(s)	219, 717
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	683
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	699, 882
Bse1I	ACTGG	3 cut(s)	152, 307, 780
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	699, 882
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	4 cut(s)	387, 516, 752, 881
BseNI	ACTGG	3 cut(s)	152, 307, 780
BseRI	GAGGAG	1 cut(s)	848
BseXI	GCAGC	3 cut(s)	411, 706, 954
BshFI	GGCC	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	684
BslFI	GGGAC	2 cut(s)	260, 715
BslI	CCNNNNNNNGG	2 cut(s)	699, 882
BsmAI	GTCTC	3 cut(s)	486, 615, 891
BsmFI	GGGAC	2 cut(s)	260, 715
BsmI	GAATGC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	14, 69, 160, 670, 967
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	4 cut(s)	388, 517, 751, 882
BspLI	GGNNCC	1 cut(s)	583
BspOI	GCTAGC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	678, 962
BspT107I	GGYRCC	1 cut(s)	581
BspTI	CTTAAG	1 cut(s)	877
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	3 cut(s)	152, 307, 780
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	5 cut(s)	14, 69, 160, 670, 967
BssNI	GRCGYC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	514, 716
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	259
BstAFI	CTTAAG	1 cut(s)	877
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	531, 535
BstDEI	CTNAG	6 cut(s)	293, 323, 396, 525, 738, 890
BstEII	GGTNACC	1 cut(s)	38
BstENI	CCTNNNNNAGG	1 cut(s)	880
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	5 cut(s)	17, 72, 163, 673, 970
BstMAI	GTCTC	3 cut(s)	486, 615, 891
BstMBI	GATC	5 cut(s)	14, 69, 160, 670, 967
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 575
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	472
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	411, 706, 954
BstV2I	GAAGAC	2 cut(s)	219, 717
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	300, 510
Cac8I	GCNNGC	2 cut(s)	531, 535
Cfr13I	GGNCC	2 cut(s)	521, 873
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	3 cut(s)	582, 681, 927
CviAII	CATG	4 cut(s)	100, 452, 469, 599
CviQI	GTAC	3 cut(s)	582, 681, 927
DdeI	CTNAG	6 cut(s)	293, 323, 396, 525, 738, 890
DpnI	GATC	5 cut(s)	16, 71, 162, 672, 969
DpnII	GATC	5 cut(s)	14, 69, 160, 670, 967
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	2 cut(s)	521, 873
Eco91I	GGTNACC	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	880
EcoO109I	RGGNCCY	1 cut(s)	873
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	277
EcoRV	GATATC	1 cut(s)	766
FaeI	CATG	4 cut(s)	103, 455, 472, 602
FaqI	GGGAC	2 cut(s)	260, 715
FatI	CATG	4 cut(s)	99, 451, 468, 598
Fnu4HI	GCNGC	3 cut(s)	425, 720, 943
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	425, 720, 943
FspBI	CTAG	3 cut(s)	420, 534, 930
GluI	GCNGC	3 cut(s)	425, 720, 943
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	1 cut(s)	684
HgaI	GACGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	259
Hin1II	CATG	4 cut(s)	103, 455, 472, 602
HinfI	GANTC	3 cut(s)	703, 742, 773
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	5 cut(s)	350, 397, 498, 741, 891
Hpy188III	TCNNGA	7 cut(s)	524, 560, 632, 668, 707, 746, 761
Hpy99I	CGWCG	3 cut(s)	261, 264, 811
HpyCH4III	ACNGT	2 cut(s)	514, 716
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	363, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 575
HpyF3I	CTNAG	6 cut(s)	293, 323, 396, 525, 738, 890
HpySE526I	ACGT	1 cut(s)	259
Hsp92I	GRCGYC	1 cut(s)	259
Hsp92II	CATG	4 cut(s)	103, 455, 472, 602
KpnI	GGTACC	1 cut(s)	585
Kzo9I	GATC	5 cut(s)	14, 69, 160, 670, 967
LmnI	GCTCC	3 cut(s)	171, 235, 950
Lsp1109I	GCAGC	3 cut(s)	411, 706, 954
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	3 cut(s)	420, 534, 930
MaeII	ACGT	1 cut(s)	259
MaeIII	GTNAC	4 cut(s)	38, 58, 241, 437
MalI	GATC	5 cut(s)	16, 71, 162, 672, 969
MboI	GATC	5 cut(s)	14, 69, 160, 670, 967
MboII	GAAGA	9 cut(s)	65, 221, 224, 262, 618, 722, 768, 795, 851
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	14
MluCI	AATT	2 cut(s)	336, 635
MlyI	GAGTC	2 cut(s)	697, 751
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	9 cut(s)	49, 134, 322, 813, 826, 829, 858, 864, 876
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	2 cut(s)	405, 878
MspCI	CTTAAG	1 cut(s)	877
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	172, 575
NdeII	GATC	5 cut(s)	14, 69, 160, 670, 967
NheI	GCTAGC	1 cut(s)	533
NlaIII	CATG	4 cut(s)	103, 455, 472, 602
NlaIV	GGNNCC	1 cut(s)	583
NmuCI	GTSAC	3 cut(s)	38, 58, 241
NspI	RCATGY	1 cut(s)	472
PciI	ACATGT	1 cut(s)	468
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	383
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	773
PkrI	GCNGC	3 cut(s)	426, 721, 944
PleI	GAGTC	2 cut(s)	697, 750
PpsI	GAGTC	2 cut(s)	697, 750
PpuMI	RGGWCCY	1 cut(s)	873
PscI	ACATGT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	521, 873
PspPPI	RGGWCCY	1 cut(s)	873
PsuI	RGATCY	1 cut(s)	14
RsaI	GTAC	3 cut(s)	583, 682, 928
RsaNI	GTAC	3 cut(s)	582, 681, 927
SaqAI	TTAA	2 cut(s)	405, 878
SatI	GCNGC	3 cut(s)	425, 720, 943
Sau3AI	GATC	5 cut(s)	14, 69, 160, 670, 967
Sau96I	GGNCC	2 cut(s)	521, 873
ScaI	AGTACT	1 cut(s)	928
SchI	GAGTC	2 cut(s)	697, 751
ScrFI	CCNGG	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	592
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	2 cut(s)	521, 873
SmlI	CTYRAG	2 cut(s)	705, 877
SmoI	CTYRAG	2 cut(s)	705, 877
SpeI	ACTAGT	1 cut(s)	929
Sse9I	AATT	2 cut(s)	336, 635
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	420, 534, 930
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	514, 716
TaiI	ACGT	1 cut(s)	262
TasI	AATT	2 cut(s)	336, 635
TatI	WGTACW	1 cut(s)	926
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	405, 878
Tru9I	TTAA	2 cut(s)	405, 878
TscAI	CASTG	2 cut(s)	307, 517
TseFI	GTSAC	3 cut(s)	38, 58, 241
TseI	GCWGC	3 cut(s)	424, 719, 942
Tsp45I	GTSAC	3 cut(s)	38, 58, 241
TspDTI	ATGAA	2 cut(s)	88, 256
TspRI	CASTG	2 cut(s)	307, 517
Vha464I	CTTAAG	1 cut(s)	877
VpaK11BI	GGWCC	2 cut(s)	521, 873
XagI	CCTNNNNNAGG	1 cut(s)	880
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	3 cut(s)	420, 534, 930
ZraI	GACGTC	1 cut(s)	260
ZrmI	AGTACT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.