AT1G54070

Dormancy auxin associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005839
Physical Location & Seq
Forward (+)
20182581 .. 20183505
925 bp
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UTR
Exon/CDS
Intron
AT1G54070.1

Sequence Viewer

Length: 372 bp
ATGGGGTTCCTACACAAGCTGTGGGATGAAACGGTGGCCGGACCGACGCCGGACAATGGTCTCGGGAAATTGAGAAAGCACGATTCATTATCCACCGTCCGATCTTCTCCTCCTTCTCTCTCAAGCGACCAAGTCACCAGAAGCATCATGGTTACCAAGGGGAATAACAATGTTCGTGGTCTCCGTAAATTGAAAATGGATCCGGATTCTCCAACCTGTTCAAGCAGCAACCCTGGGACACCTTTAACCCCTGGGACACCATGCTATGCTTTGGGACCATTCACTGCCGGCAAAATCCCTTCCTCTGGCGAAGACGATGCAGCAAGTCTAACTACTTATGAATGGATTGTGATAAACGCGTTGGACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

123

Amino Acids

13.1

Weight (kDa)

7.79

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 88 1.6e-08 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AccIII TCCGGA 1 cut(s) 202
AclWI GGATC 2 cut(s) 194, 207
AcoI YGGCCR 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 47
AfiI CCNNNNNNNGG 2 cut(s) 56, 305
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 193, 222
AjnI CCWGG 2 cut(s) 232, 250
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 65, 185
AlwI GGATC 2 cut(s) 194, 207
Ama87I CYCGRG 1 cut(s) 62
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 225, 320
AspS9I GGNCC 3 cut(s) 41, 275, 364
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 3 cut(s) 41, 275, 364
BamHI GGATCC 1 cut(s) 199
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 237, 332
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BciT130I CCWGG 2 cut(s) 234, 252
BcoDI GTCTC 2 cut(s) 65, 185
BisI GCNGC 2 cut(s) 226, 321
BlsI GCNGC 2 cut(s) 227, 322
Bme1390I CCNGG 2 cut(s) 234, 252
Bme18I GGWCC 3 cut(s) 41, 275, 364
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 41, 275, 364
BmiI GGNNCC 3 cut(s) 8, 201, 276
BmrFI CCNGG 2 cut(s) 234, 252
BmsI GCATC 2 cut(s) 153, 307
BoxI GACNNNNGTC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 2 cut(s) 65, 185
BsaJI CCNNGG 5 cut(s) 156, 232, 233, 250, 251
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 305
Bse118I RCCGGY 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 234, 252
BseDI CCNNGG 5 cut(s) 156, 232, 233, 250, 251
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 56, 305
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 2 cut(s) 237, 332
Bsh1236I CGCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 4 cut(s) 39, 50, 203, 288
BslFI GGGAC 3 cut(s) 250, 268, 288
BslI CCNNNNNNNGG 2 cut(s) 56, 305
BsmAI GTCTC 2 cut(s) 65, 185
BsmFI GGGAC 3 cut(s) 250, 268, 288
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 2 cut(s) 65, 185
BsoBI CYCGRG 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 2 cut(s) 101, 199
BspANI GGCC 1 cut(s) 38
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 3 cut(s) 8, 201, 276
BspPI GGATC 2 cut(s) 194, 207
BspTNI GGTCTC 2 cut(s) 65, 185
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 5 cut(s) 156, 232, 233, 250, 251
BssMI GATC 2 cut(s) 101, 199
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 234, 252
Bst4CI ACNGT 3 cut(s) 34, 97, 368
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 289
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 359
BstKTI GATC 2 cut(s) 104, 202
BstMAI GTCTC 2 cut(s) 65, 185
BstMBI GATC 2 cut(s) 101, 199
BstNI CCWGG 2 cut(s) 234, 252
BstPAI GACNNNNGTC 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 232, 250
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 2 cut(s) 237, 332
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 3 cut(s) 41, 275, 364
CpoI CGGWCCG 1 cut(s) 41
CseI GACGC 1 cut(s) 55
CspCI CAANNNNNGTGG 2 cut(s) 157, 192
CspI CGGWCCG 1 cut(s) 41
CviAII CATG 2 cut(s) 148, 261
CviJI RGCY 2 cut(s) 19, 38
CviKI_1 RGCY 2 cut(s) 19, 38
DpnI GATC 2 cut(s) 103, 201
DpnII GATC 2 cut(s) 101, 199
EaeI YGGCCR 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 2 cut(s) 65, 185
Eco47I GGWCC 3 cut(s) 41, 275, 364
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 232, 250
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 151, 264
FaiI YATR 4 cut(s) 149, 262, 267, 339
FaqI GGGAC 3 cut(s) 250, 268, 288
FatI CATG 2 cut(s) 147, 260
Fnu4HI GCNGC 2 cut(s) 226, 321
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 226, 321
GluI GCNGC 2 cut(s) 226, 321
HaeIII GGCC 1 cut(s) 38
HapII CCGG 4 cut(s) 39, 50, 203, 288
HgaI GACGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 2 cut(s) 151, 264
HinfI GANTC 2 cut(s) 83, 206
HpaII CCGG 4 cut(s) 39, 50, 203, 288
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 64, 203
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 2 cut(s) 123, 309
HpyCH4III ACNGT 3 cut(s) 34, 97, 368
HpyCH4V TGCA 1 cut(s) 320
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 151, 264
Kpn2I TCCGGA 1 cut(s) 202
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 101, 199
Lsp1109I GCAGC 2 cut(s) 237, 332
LweI GCATC 2 cut(s) 153, 307
MaeIII GTNAC 2 cut(s) 133, 151
MalI GATC 2 cut(s) 103, 201
MboI GATC 2 cut(s) 101, 199
MboII GAAGA 2 cut(s) 96, 323
MflI RGATCY 1 cut(s) 199
MluCI AATT 2 cut(s) 68, 188
MluI ACGCGT 1 cut(s) 357
MmeI TCCRAC 2 cut(s) 236, 342
MnlI CCTC 2 cut(s) 120, 313
MroI TCCGGA 1 cut(s) 202
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 1 cut(s) 245
MspI CCGG 4 cut(s) 39, 50, 203, 288
MspR9I CCNGG 2 cut(s) 234, 252
MvaI CCWGG 2 cut(s) 234, 252
MvnI CGCG 1 cut(s) 359
NaeI GCCGGC 1 cut(s) 289
NdeII GATC 2 cut(s) 101, 199
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 151, 264
NlaIV GGNNCC 3 cut(s) 8, 201, 276
NmuCI GTSAC 1 cut(s) 133
PasI CCCWGGG 2 cut(s) 233, 251
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 2 cut(s) 83, 206
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 227, 322
PshAI GACNNNNGTC 1 cut(s) 57
Psp6I CCWGG 2 cut(s) 232, 250
PspEI GGTNACC 1 cut(s) 151
PspGI CCWGG 2 cut(s) 232, 250
PspN4I GGNNCC 3 cut(s) 8, 201, 276
PspPI GGNCC 3 cut(s) 41, 275, 364
PsuI RGATCY 1 cut(s) 199
PsyI GACNNNGTC 1 cut(s) 131
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 2 cut(s) 226, 321
Sau3AI GATC 2 cut(s) 101, 199
Sau96I GGNCC 3 cut(s) 41, 275, 364
ScrFI CCNGG 2 cut(s) 234, 252
SetI ASST 3 cut(s) 21, 218, 244
SfaNI GCATC 2 cut(s) 153, 307
SinI GGWCC 3 cut(s) 41, 275, 364
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 2 cut(s) 68, 188
StyD4I CCNGG 2 cut(s) 232, 250
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 3 cut(s) 34, 97, 368
TaqII GACCGA 1 cut(s) 58
TasI AATT 2 cut(s) 68, 188
TfiI GAWTC 2 cut(s) 83, 206
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 225, 320
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 42, 75, 354
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 3 cut(s) 41, 275, 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.