Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015268.1

Orthogroup ID

OG0005839

Physical Location & Seq

Genomic Coordinates Forward (+)

28135 .. 29257

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015268.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggttttcttcacaagctttgggatgaaacactcgccggccccgcaccggagtccggcctcggcaagctccgcaagtacgactccctctccgccccgcgcactgcaactatggtcgctgcagatgaggcgccagttgtcactcggagcattactattcttaggactcattcttccaaccttggaaactttccggctgattctggctcgccctccgagtctcccaccacgccgggaacgccggtctcaccgggaacaccaacaaaaaatttcaggaaactaacaaggagaaaatcatccacggacgcattgcgacgcgccgagcctagaagtccgactggttacgattggatggtgattactgcattggatcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

125

Amino Acids

13.48

Weight (kDa)

9.98

Isoelectric Point (pI)

71.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54070
fragaria_vesca	FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330
malus_domestica	MD09G1176600.v1.1 MD17G1150200.v1.1
prunus_persica	Prupe.3G035700_v2.0.a1 Prupe.3G035700_v2.0.a1 Prupe.3G035700_v2.0.a1
pyrus_communis	pycom09g09490 pycom17g14350
rosa_chinensis	RchiOBHm_Chr2g0146781
rosa_laevigata	RLG00000020221
rosa_multiflora	Rmu_co8441963.1_g000001 Rmu_sc0015268.1_g000008
rosa_roxburghii	Rroxscaffold_2G00099920
rosa_rugosa	Rorug02G0396600 Rorug02G0396600 Rorug02G0396700 Rorug02G0396800
rosa_samantha	Rh2AG453100 Rh2BG466000 Rh2CG440100 Rh2DG475000
rosa_wichuraiana	Rw2G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccII	CGCG	2 cut(s)	100, 318
AciI	CCGC	4 cut(s)	45, 73, 93, 98
AcsI	RAATTY	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	49, 56
AluBI	AGCT	2 cut(s)	19, 70
AluI	AGCT	2 cut(s)	19, 70
Alw26I	GTCTC	2 cut(s)	225, 250
AoxI	GGCC	2 cut(s)	40, 58
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	3 cut(s)	102, 133, 320
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	2 cut(s)	234, 252
AsuHPI	GGTGA	2 cut(s)	240, 367
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	234, 252
BcoDI	GTCTC	2 cut(s)	225, 250
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	234, 252
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	43, 132
BmrFI	CCNGG	2 cut(s)	234, 252
BpuMI	CCSGG	2 cut(s)	234, 252
BsaHI	GRCGYC	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	61, 181, 300
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 56
Bse118I	RCCGGY	2 cut(s)	38, 241
Bse1I	ACTGG	2 cut(s)	134, 343
Bse3DI	GCAATG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	61, 181, 300
BseGI	GGATG	3 cut(s)	31, 296, 357
BseLI	CCNNNNNNNGG	2 cut(s)	49, 56
BseMI	GCAATG	1 cut(s)	308
BseNI	ACTGG	2 cut(s)	134, 343
BseXI	GCAGC	1 cut(s)	106
Bsh1236I	CGCG	2 cut(s)	100, 318
BshFI	GGCC	2 cut(s)	42, 60
BshNI	GGYRCC	1 cut(s)	130
BsiSI	CCGG	7 cut(s)	39, 50, 57, 194, 233, 242, 251
BslI	CCNNNNNNNGG	2 cut(s)	49, 56
BsmAI	GTCTC	2 cut(s)	225, 250
BsnI	GGCC	2 cut(s)	42, 60
Bso31I	GGTCTC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	4 cut(s)	45, 73, 93, 98
BspANI	GGCC	2 cut(s)	42, 60
BspFNI	CGCG	2 cut(s)	100, 318
BspLI	GGNNCC	2 cut(s)	43, 132
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	308
BsrFI	RCCGGY	2 cut(s)	38, 241
BsrI	ACTGG	2 cut(s)	134, 343
BssAI	RCCGGY	2 cut(s)	38, 241
BssECI	CCNNGG	3 cut(s)	61, 181, 300
BssMI	GATC	1 cut(s)	370
BssNI	GRCGYC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	40, 68, 209
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	31, 296, 357
BstFNI	CGCG	2 cut(s)	100, 318
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	3 cut(s)	102, 133, 320
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	2 cut(s)	225, 250
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 72, 128, 238
BstSCI	CCNGG	2 cut(s)	232, 250
BstSFI	CTRYAG	1 cut(s)	120
BstUI	CGCG	2 cut(s)	100, 318
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	42, 60
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	31, 296, 357
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	40, 68, 209
CfoI	GCGC	3 cut(s)	102, 133, 320
Cfr10I	RCCGGY	2 cut(s)	38, 241
Cfr13I	GGNCC	1 cut(s)	41
CseI	GACGC	2 cut(s)	314, 324
Csp6I	GTAC	1 cut(s)	79
CviJI	RGCY	7 cut(s)	19, 42, 60, 70, 197, 207, 325
CviKI_1	RGCY	7 cut(s)	19, 42, 60, 70, 197, 207, 325
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	1 cut(s)	161
DinI	GGCGCC	1 cut(s)	132
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EciI	GGCGGA	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	181
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	181
FaiI	YATR	1 cut(s)	113
FauI	CCCGC	2 cut(s)	52, 105
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	38, 283, 364
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	3 cut(s)	101, 132, 319
GluI	GCNGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	134
HaeIII	GGCC	2 cut(s)	42, 60
HapII	CCGG	7 cut(s)	39, 50, 57, 194, 233, 242, 251
HgaI	GACGC	2 cut(s)	314, 324
HhaI	GCGC	3 cut(s)	102, 133, 320
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	3 cut(s)	100, 131, 318
HinP1I	GCGC	3 cut(s)	100, 131, 318
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	5 cut(s)	53, 83, 166, 200, 218
HpaII	CCGG	7 cut(s)	39, 50, 57, 194, 233, 242, 251
HphI	GGTGA	2 cut(s)	240, 367
Hpy188I	TCNGA	3 cut(s)	147, 217, 336
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	107, 122, 365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 72, 128, 238
HpyF3I	CTNAG	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	3 cut(s)	100, 131, 318
KasI	GGCGCC	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	75, 147
Lsp1109I	GCAGC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	139, 341
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	1 cut(s)	165
MluCI	AATT	1 cut(s)	268
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	4 cut(s)	62, 77, 160, 227
MmeI	TCCRAC	2 cut(s)	201, 359
MnlI	CCTC	4 cut(s)	71, 98, 121, 223
MroNI	GCCGGC	1 cut(s)	38
MspI	CCGG	7 cut(s)	39, 50, 57, 194, 233, 242, 251
MspR9I	CCNGG	2 cut(s)	234, 252
MvnI	CGCG	2 cut(s)	100, 318
MwoI	GCNNNNNNNGC	4 cut(s)	44, 72, 128, 238
NaeI	GCCGGC	1 cut(s)	40
NarI	GGCGCC	1 cut(s)	131
NciI	CCSGG	2 cut(s)	234, 252
NdeII	GATC	1 cut(s)	370
NgoMIV	GCCGGC	1 cut(s)	38
NlaIV	GGNNCC	2 cut(s)	43, 132
NmeAIII	GCCGAG	2 cut(s)	42, 346
NmuCI	GTSAC	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	4 cut(s)	61, 77, 160, 226
PluTI	GGCGCC	1 cut(s)	134
PpsI	GAGTC	4 cut(s)	61, 77, 160, 226
PspN4I	GGNNCC	2 cut(s)	43, 132
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	4 cut(s)	62, 77, 160, 227
ScrFI	CCNGG	2 cut(s)	234, 252
SetI	ASST	3 cut(s)	21, 72, 183
SfcI	CTRYAG	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	4 cut(s)	45, 73, 93, 98
SspDI	GGCGCC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	2 cut(s)	232, 250
StyI	CCWWGG	1 cut(s)	181
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	200
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	268
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.