Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005839

Physical Location & Seq

Genomic Coordinates Reverse (-)

50721525 .. 50722173

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0396800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGGGCCTCTCCGTCAAAGCGAGTCAAGTCGTCCTTTTCCAACTCGCCCGAGTTCAACTCAGCCTGCGACTCGGCCTTCAGCCACTGCCTCTCTCTGACCGAGCACGGCTTCGACGGCGTCTTCCCCTTCCAGCTCGCCACCGCCTCCGACCATCTCTACCAAAACCTCCAGGCCGGGCCCCACCCCTACCCTCTCATCCTCAGGTGGGTCCCTTCTCCCCCGACTCGCTCCCAGGTCGACTCCGCTCTCAGGGCCGTCCCTCGCGAGTCCAAGACGACGACACTCGGCCCGGCCCAGTTCAAGCAGTGGGCCGTCGAGCTCTTCGCCGGCGCCGTCGTCGGCAACGCTCGCAAAGCCCTCATGGTTCGGGTCCCCATCGGCGTCGCTGGGATTGCTGGCTTGGGGGCCGCCAGTCGCTCCGGTAAGGACATGGTTGGAACCGCGATTGGGGTGTACGCGCTTGGCGTTGCCACCGCCATTTATCTCGGTTTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

166

Amino Acids

17.41

Weight (kDa)

9.51

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54070
fragaria_vesca	FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330
malus_domestica	MD09G1176600.v1.1 MD17G1150200.v1.1
prunus_persica	Prupe.3G035700_v2.0.a1 Prupe.3G035700_v2.0.a1 Prupe.3G035700_v2.0.a1
pyrus_communis	pycom09g09490 pycom17g14350
rosa_chinensis	RchiOBHm_Chr2g0146781
rosa_laevigata	RLG00000020221
rosa_multiflora	Rmu_co8441963.1_g000001 Rmu_sc0015268.1_g000008
rosa_roxburghii	Rroxscaffold_2G00099920
rosa_rugosa	Rorug02G0396600 Rorug02G0396600 Rorug02G0396700 Rorug02G0396800
rosa_samantha	Rh2AG453100 Rh2BG466000 Rh2CG440100 Rh2DG475000
rosa_wichuraiana	Rw2G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	3 cut(s)	267, 446, 461
AciI	CCGC	5 cut(s)	144, 246, 411, 444, 477
AcuI	CTGAAG	1 cut(s)	64
AcyI	GRCGYC	3 cut(s)	120, 333, 384
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	208, 252, 450
AgsI	TTSAA	2 cut(s)	58, 304
AjnI	CCWGG	2 cut(s)	171, 234
AluBI	AGCT	2 cut(s)	136, 322
AluI	AGCT	2 cut(s)	136, 322
Alw21I	GWGCWC	2 cut(s)	108, 324
AlwNI	CAGNNNCTG	1 cut(s)	87
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	9 cut(s)	6, 75, 174, 179, 255, 289, 294, 312, 408
ApaI	GGGCCC	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	335, 463
AsuC2I	CCSGG	2 cut(s)	178, 293
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	2 cut(s)	211, 373
AxyI	CCTNAGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	2 cut(s)	183, 324
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	108, 324
BccI	CCATC	2 cut(s)	162, 386
BceAI	ACGGC	5 cut(s)	124, 133, 242, 299, 320
BciT130I	CCWGG	2 cut(s)	173, 236
BcnI	CCSGG	2 cut(s)	178, 293
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	4 cut(s)	173, 178, 236, 293
Bme18I	GGWCC	2 cut(s)	211, 373
BmeT110I	CYCGRG	1 cut(s)	50
BmrFI	CCNGG	4 cut(s)	173, 178, 236, 293
BmrI	ACTGGG	1 cut(s)	292
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	178, 293
BsaHI	GRCGYC	3 cut(s)	120, 333, 384
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 252, 450
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	298, 414
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	2 cut(s)	173, 236
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	208, 252, 450
BseMII	CTCAG	3 cut(s)	75, 217, 265
BseNI	ACTGG	2 cut(s)	298, 414
BseSI	GKGCMC	1 cut(s)	183
BseYI	CCCAGC	1 cut(s)	389
Bsh1236I	CGCG	3 cut(s)	267, 446, 461
BshFI	GGCC	9 cut(s)	8, 77, 176, 181, 257, 291, 296, 314, 410
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	2 cut(s)	108, 324
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	4 cut(s)	177, 293, 330, 423
BslFI	GGGAC	3 cut(s)	197, 245, 359
BslI	CCNNNNNNNGG	3 cut(s)	208, 252, 450
BsmFI	GGGAC	3 cut(s)	197, 245, 359
BsnI	GGCC	9 cut(s)	8, 77, 176, 181, 257, 291, 296, 314, 410
BsoBI	CYCGRG	1 cut(s)	50
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	3 cut(s)	108, 183, 324
Bsp68I	TCGCGA	1 cut(s)	267
BspACI	CCGC	5 cut(s)	144, 246, 411, 444, 477
BspANI	GGCC	9 cut(s)	8, 77, 176, 181, 257, 291, 296, 314, 410
BspCNI	CTCAG	3 cut(s)	74, 216, 264
BspFNI	CGCG	3 cut(s)	267, 446, 461
BspQI	GCTCTTC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	298, 414
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	234
BssNI	GRCGYC	3 cut(s)	120, 333, 384
Bst2UI	CCWGG	2 cut(s)	173, 236
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	3 cut(s)	120, 333, 384
BstC8I	GCNNGC	5 cut(s)	67, 138, 331, 352, 400
BstDEI	CTNAG	3 cut(s)	61, 203, 251
BstF5I	GGATG	1 cut(s)	198
BstFNI	CGCG	3 cut(s)	267, 446, 461
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 463
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 254, 351, 356, 395
BstNI	CCWGG	2 cut(s)	173, 236
BstSCI	CCNGG	4 cut(s)	171, 176, 234, 291
BstSLI	GKGCMC	1 cut(s)	183
BstUI	CGCG	3 cut(s)	267, 446, 461
BstV2I	GAAGAC	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	203
BsuRI	GGCC	9 cut(s)	8, 77, 176, 181, 257, 291, 296, 314, 410
BtsCI	GGATG	1 cut(s)	198
BtsI	GCAGTG	2 cut(s)	85, 314
BtsIMutI	CAGTG	2 cut(s)	85, 314
BtuMI	TCGCGA	1 cut(s)	267
Cac8I	GCNNGC	5 cut(s)	67, 138, 331, 352, 400
CaiI	CAGNNNCTG	1 cut(s)	87
CfoI	GCGC	2 cut(s)	335, 463
Cfr10I	RCCGGY	1 cut(s)	329
CseI	GACGC	2 cut(s)	109, 373
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	2 cut(s)	364, 433
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	3 cut(s)	61, 203, 251
DinI	GGCGCC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	183, 324
Eco47I	GGWCC	2 cut(s)	211, 373
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	64
Eco81I	CCTNAGG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	4 cut(s)	6, 180, 211, 373
EcoRII	CCWGG	2 cut(s)	171, 234
EcoT38I	GRGCYC	2 cut(s)	183, 324
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	2 cut(s)	367, 436
FaiI	YATR	2 cut(s)	365, 434
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	3 cut(s)	197, 245, 359
FatI	CATG	2 cut(s)	363, 432
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	2 cut(s)	183, 324
Fsp4HI	GCNGC	1 cut(s)	411
GlaI	GCGC	2 cut(s)	334, 462
GluI	GCNGC	1 cut(s)	411
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	9 cut(s)	8, 77, 176, 181, 257, 291, 296, 314, 410
HapII	CCGG	4 cut(s)	177, 293, 330, 423
HgaI	GACGC	2 cut(s)	109, 373
HhaI	GCGC	2 cut(s)	335, 463
Hin1I	GRCGYC	3 cut(s)	120, 333, 384
Hin1II	CATG	2 cut(s)	367, 436
Hin6I	GCGC	2 cut(s)	333, 461
HinP1I	GCGC	2 cut(s)	333, 461
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	5 cut(s)	24, 71, 226, 242, 269
HpaII	CCGG	4 cut(s)	177, 293, 330, 423
Hpy166II	GTNNAC	3 cut(s)	241, 457, 494
Hpy188I	TCNGA	2 cut(s)	99, 151
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	3 cut(s)	241, 457, 494
Hpy99I	CGWCG	6 cut(s)	119, 283, 320, 341, 344, 389
HpyAV	CCTTC	3 cut(s)	88, 139, 225
HpyCH4III	ACNGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 254, 351, 356, 395
HpyF3I	CTNAG	3 cut(s)	61, 203, 251
Hsp92I	GRCGYC	3 cut(s)	120, 333, 384
Hsp92II	CATG	2 cut(s)	367, 436
HspAI	GCGC	2 cut(s)	333, 461
KasI	GGCGCC	1 cut(s)	332
KflI	GGGWCCC	2 cut(s)	211, 373
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	236, 425
MbiI	CCGCTC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	115, 316
MhlI	GDGCHC	3 cut(s)	108, 183, 324
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	5 cut(s)	33, 65, 220, 236, 278
MmeI	TCCRAC	3 cut(s)	66, 174, 418
MnlI	CCTC	8 cut(s)	19, 101, 157, 179, 204, 212, 273, 371
MreI	CGCCGGCG	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	329
MspI	CCGG	4 cut(s)	177, 293, 330, 423
MspR9I	CCNGG	4 cut(s)	173, 178, 236, 293
MvaI	CCWGG	2 cut(s)	173, 236
MvnI	CGCG	3 cut(s)	267, 446, 461
MwoI	GCNNNNNNNGC	5 cut(s)	117, 254, 351, 356, 395
NaeI	GCCGGC	1 cut(s)	331
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	2 cut(s)	178, 293
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	367, 436
NmeAIII	GCCGAG	2 cut(s)	53, 267
NruI	TCGCGA	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 465
PdiI	GCCGGC	1 cut(s)	331
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	5 cut(s)	32, 65, 220, 236, 277
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	5 cut(s)	32, 65, 220, 236, 277
PpuMI	RGGWCCY	2 cut(s)	211, 373
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	2 cut(s)	211, 373
Psp6I	CCWGG	2 cut(s)	171, 234
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	171, 234
PspOMI	GGGCCC	1 cut(s)	179
PspPPI	RGGWCCY	2 cut(s)	211, 373
PstNI	CAGNNNCTG	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	119
RruI	TCGCGA	1 cut(s)	267
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	329
SatI	GCNGC	1 cut(s)	411
SchI	GAGTC	5 cut(s)	33, 65, 220, 236, 278
ScrFI	CCNGG	4 cut(s)	173, 178, 236, 293
SduI	GDGCHC	3 cut(s)	108, 183, 324
SetI	ASST	5 cut(s)	138, 171, 209, 240, 324
SfoI	GGCGCC	1 cut(s)	334
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	2 cut(s)	211, 373
SsiI	CCGC	5 cut(s)	144, 246, 411, 444, 477
SspDI	GGCGCC	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	4 cut(s)	171, 176, 234, 291
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	3 cut(s)	114, 240, 318
TaqII	GACCGA	1 cut(s)	116
TauI	GCSGC	1 cut(s)	413
TscAI	CASTG	2 cut(s)	92, 314
TspRI	CASTG	2 cut(s)	92, 314
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	211, 373
XmiI	GTMKAC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.