Prupe.3G035700_v2.0.a1

Auxin-repressed 12.5 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0005839
Physical Location & Seq
Forward (+)
2592068 .. 2594084
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G035700.2

Sequence Viewer

Length: 372 bp
ATGGGTTTTCTTCACAAGCTTTGGGATGAAACACTCGCCGGCCCGGCACCTGAAACCGGCCTCGGCAAGCTCCGCAAGTTCGACTCCTTGTCTAGCCCGGCCTCGCCGACTATGGTCTGCGACGAGGTGCCCGTCACTCGGAGCATTACAATTCTTAGGACCACTTCTTCCACGTTTGGAAACCTGTCACCGAATTCCGGCTCCCCCTCGGAGTCCCCAACTACACCAGGCACTCCAAAAAGCCCGGGAACACCAGGTGCAATGACCAAGAAATTAACAAGGAGGAAGTCGTCAGCTGATGCTTTGGAACGCGCCGAACCTAGAAGTCCGACTGGTTACGATTGGATGGTAATTGCTGCTTTGGATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

124

Amino Acids

13.06

Weight (kDa)

9.3

Isoelectric Point (pI)

74.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 127
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 56, 138, 197
AhdI GACNNNNNGTC 1 cut(s) 88
AjnI CCWGG 2 cut(s) 226, 253
AluBI AGCT 3 cut(s) 19, 70, 296
AluI AGCT 3 cut(s) 19, 70, 296
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 3 cut(s) 40, 58, 99
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 193
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 41, 159
AsuC2I CCSGG 4 cut(s) 44, 98, 245, 246
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 132
BanI GGYRCC 2 cut(s) 46, 127
BbvI GCAGC 1 cut(s) 343
BccI CCATC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 228, 255
BcnI CCSGG 4 cut(s) 44, 98, 245, 246
BfaI CTAG 2 cut(s) 93, 321
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 6 cut(s) 44, 98, 228, 245, 246, 255
Bme18I GGWCC 1 cut(s) 159
BmeRI GACNNNNNGTC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 41, 159
BmiI GGNNCC 3 cut(s) 48, 129, 202
BmrFI CCNGG 6 cut(s) 44, 98, 228, 245, 246, 255
BmsI GCATC 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 113
BpuMI CCSGG 4 cut(s) 44, 98, 245, 246
BsaJI CCNNGG 3 cut(s) 61, 207, 244
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 138, 197
Bse118I RCCGGY 2 cut(s) 38, 56
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 2 cut(s) 228, 255
BseDI CCNNGG 3 cut(s) 61, 207, 244
BseGI GGATG 2 cut(s) 31, 351
BseLI CCNNNNNNNGG 3 cut(s) 56, 138, 197
BseMI GCAATG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 343
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 3 cut(s) 42, 60, 101
BshNI GGYRCC 2 cut(s) 46, 127
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 6 cut(s) 39, 44, 57, 98, 198, 245
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 3 cut(s) 56, 138, 197
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 3 cut(s) 42, 60, 101
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 1 cut(s) 73
BspANI GGCC 3 cut(s) 42, 60, 101
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 48, 129, 202
BspT107I GGYRCC 2 cut(s) 46, 127
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 38, 56
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 2 cut(s) 38, 56
BssECI CCNNGG 3 cut(s) 61, 207, 244
BssMI GATC 1 cut(s) 364
Bst2UI CCWGG 2 cut(s) 228, 255
BstC8I GCNNGC 2 cut(s) 40, 68
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 31, 351
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 2 cut(s) 44, 72
BstNI CCWGG 2 cut(s) 228, 255
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 6 cut(s) 42, 96, 226, 243, 244, 253
BstSLI GKGCMC 1 cut(s) 132
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 343
BsuRI GGCC 3 cut(s) 42, 60, 101
BtsCI GGATG 2 cut(s) 31, 351
Cac8I GCNNGC 2 cut(s) 40, 68
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 2 cut(s) 38, 56
Cfr13I GGNCC 2 cut(s) 41, 159
Cfr9I CCCGGG 1 cut(s) 244
CsiI ACCWGGT 1 cut(s) 253
CviJI RGCY 9 cut(s) 19, 42, 60, 70, 96, 101, 201, 243, 296
CviKI_1 RGCY 9 cut(s) 19, 42, 60, 70, 96, 101, 201, 243, 296
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DraIII CACNNNGTG 1 cut(s) 257
DriI GACNNNNNGTC 1 cut(s) 88
Eam1105I GACNNNNNGTC 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 226, 253
FaiI YATR 1 cut(s) 113
FaqI GGGAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 38, 358
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 2 cut(s) 93, 321
GlaI GCGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 3 cut(s) 42, 60, 101
HapII CCGG 6 cut(s) 39, 44, 57, 98, 198, 245
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 83, 212
HpaII CCGG 6 cut(s) 39, 44, 57, 98, 198, 245
HphI GGTGA 1 cut(s) 180
Hpy188I TCNGA 3 cut(s) 141, 211, 330
Hpy99I CGWCG 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 1 cut(s) 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 72
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 173
HspAI GCGC 1 cut(s) 312
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 3 cut(s) 75, 141, 206
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 289
MabI ACCWGGT 1 cut(s) 253
MaeI CTAG 2 cut(s) 93, 321
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 3 cut(s) 133, 186, 335
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 4 cut(s) 150, 193, 272, 351
MlyI GAGTC 2 cut(s) 77, 221
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 5 cut(s) 71, 112, 118, 217, 276
MroNI GCCGGC 1 cut(s) 38
MseI TTAA 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 6 cut(s) 39, 44, 57, 98, 198, 245
MspR9I CCNGG 6 cut(s) 44, 98, 228, 245, 246, 255
MvaI CCWGG 2 cut(s) 228, 255
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 44, 72
NaeI GCCGGC 1 cut(s) 40
NciI CCSGG 4 cut(s) 44, 98, 245, 246
NdeII GATC 1 cut(s) 364
NgoMIV GCCGGC 1 cut(s) 38
NlaIV GGNNCC 3 cut(s) 48, 129, 202
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 2 cut(s) 133, 186
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 40
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 2 cut(s) 77, 220
PpsI GAGTC 2 cut(s) 77, 220
PshAI GACNNNNGTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 226, 253
PspGI CCWGG 2 cut(s) 226, 253
PspN4I GGNNCC 3 cut(s) 48, 129, 202
PspPI GGNCC 2 cut(s) 41, 159
PvuII CAGCTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 41, 159
SchI GAGTC 2 cut(s) 77, 221
ScrFI CCNGG 6 cut(s) 44, 98, 228, 245, 246, 255
SduI GDGCHC 1 cut(s) 132
SetI ASST 9 cut(s) 21, 52, 72, 129, 176, 186, 259, 298, 322
SexAI ACCWGGT 1 cut(s) 253
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 159
SmaI CCCGGG 1 cut(s) 246
Sse9I AATT 4 cut(s) 150, 193, 272, 351
SsiI CCGC 1 cut(s) 73
SspMI CTAG 2 cut(s) 93, 321
StyD4I CCNGG 6 cut(s) 42, 96, 226, 243, 244, 253
TaiI ACGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 81
TasI AATT 4 cut(s) 150, 193, 272, 351
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 2 cut(s) 133, 186
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 133, 186
TspDTI ATGAA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 193
XmaI CCCGGG 1 cut(s) 244
XspI CTAG 2 cut(s) 93, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.