Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005839

Physical Location & Seq

Genomic Coordinates Forward (+)

7664485 .. 7665710

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGTTTTCTTCACAAGCTTTGGGATGAAACACTCGCCGGACCGGCACCTGAATCCGGCCTTGGTAAGCTCCGAAAGTACGACTCCATGTCTATCCCTTCCTCTTCGCCAATGGCTGCGAATGAGGTTCCGGTCACTCGGAGCATTACTATTCTTAGGACTAGTTCGTCCACCCTTGGAAACCTTTCACCTGATTCCGGCTCCCCCTCAGAGTCCCCAACCACACCAGGAACTCCAAGAACCCCTGGAACACCAGGTGCAAGGAATTTCAAGAAATTAACAAGGAGGAAATCGTCTGCTGATGCTTTGACACGCGCCGAACCTAGAAGTCCGACTGGTTACGATTGGATGGTAATTACTGCTTTGGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_repressed

Protein Analysis

125

Amino Acids

13.23

Weight (kDa)

9.98

Isoelectric Point (pI)

72.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54070
fragaria_vesca	FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330 FvH4_6g35330
malus_domestica	MD09G1176600.v1.1 MD17G1150200.v1.1
prunus_persica	Prupe.3G035700_v2.0.a1 Prupe.3G035700_v2.0.a1 Prupe.3G035700_v2.0.a1
pyrus_communis	pycom09g09490 pycom17g14350
rosa_chinensis	RchiOBHm_Chr2g0146781
rosa_laevigata	RLG00000020221
rosa_multiflora	Rmu_co8441963.1_g000001 Rmu_sc0015268.1_g000008
rosa_roxburghii	Rroxscaffold_2G00099920
rosa_rugosa	Rorug02G0396600 Rorug02G0396600 Rorug02G0396700 Rorug02G0396800
rosa_samantha	Rh2AG453100 Rh2BG466000 Rh2CG440100 Rh2DG475000
rosa_wichuraiana	Rw2G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	46
AccII	CGCG	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	265
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	56, 197
AgsI	TTSAA	1 cut(s)	271
AhdI	GACNNNNNGTC	1 cut(s)	88
AhlI	ACTAGT	1 cut(s)	161
AjnI	CCWGG	3 cut(s)	226, 244, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	45, 77
AluBI	AGCT	2 cut(s)	19, 70
AluI	AGCT	2 cut(s)	19, 70
AoxI	GGCC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	3 cut(s)	228, 246, 255
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	2 cut(s)	162, 324
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	228, 246, 255
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	48, 129, 202
BmrFI	CCNGG	3 cut(s)	228, 246, 255
BmsI	GCATC	1 cut(s)	292
BsaJI	CCNNGG	3 cut(s)	61, 175, 244
BsaWI	WCCGGW	1 cut(s)	130
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 197
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	3 cut(s)	228, 246, 255
BseDI	CCNNGG	3 cut(s)	61, 175, 244
BseGI	GGATG	2 cut(s)	31, 354
BseLI	CCNNNNNNNGG	2 cut(s)	56, 197
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	340
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	46
BsiSI	CCGG	5 cut(s)	39, 44, 57, 131, 198
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	56, 197
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	48, 129, 202
BspT107I	GGYRCC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	61, 175, 244
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	61, 175
Bst2UI	CCWGG	3 cut(s)	228, 246, 255
Bst6I	CTCTTC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	155, 208
BstF5I	GGATG	2 cut(s)	31, 354
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	3 cut(s)	228, 246, 255
BstSCI	CCNGG	3 cut(s)	226, 244, 253
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	31, 354
CfoI	GCGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	41
CpoI	CGGWCCG	1 cut(s)	41
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	79
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	5 cut(s)	19, 60, 70, 116, 201
CviKI_1	RGCY	5 cut(s)	19, 60, 70, 116, 201
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	155, 208
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraIII	CACNNNGTG	1 cut(s)	257
DrdI	GACNNNNNNGTC	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	109
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	61, 175
Eco47I	GGWCC	1 cut(s)	41
EcoRII	CCWGG	3 cut(s)	226, 244, 253
EcoT14I	CCWWGG	2 cut(s)	61, 175
ErhI	CCWWGG	2 cut(s)	61, 175
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	38, 361
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	162, 324
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	60
HapII	CCGG	5 cut(s)	39, 44, 57, 131, 198
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	4 cut(s)	53, 83, 194, 212
HpaII	CCGG	5 cut(s)	39, 44, 57, 131, 198
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	4 cut(s)	74, 141, 211, 333
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	1 cut(s)	108
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	155, 208
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	315
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	3 cut(s)	75, 141, 206
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	292
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	2 cut(s)	162, 324
MaeIII	GTNAC	2 cut(s)	133, 338
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	96
MluCI	AATT	3 cut(s)	265, 275, 354
MlyI	GAGTC	2 cut(s)	77, 221
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	112, 118, 217, 279
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	1 cut(s)	278
MspI	CCGG	5 cut(s)	39, 44, 57, 131, 198
MspR9I	CCNGG	3 cut(s)	228, 246, 255
MvaI	CCWGG	3 cut(s)	228, 246, 255
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	3 cut(s)	48, 129, 202
NmuCI	GTSAC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	53, 194
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	77, 220
PpsI	GAGTC	2 cut(s)	77, 220
Psp6I	CCWGG	3 cut(s)	226, 244, 253
PspGI	CCWGG	3 cut(s)	226, 244, 253
PspN4I	GGNNCC	3 cut(s)	48, 129, 202
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	2 cut(s)	77, 221
ScrFI	CCNGG	3 cut(s)	228, 246, 255
SetI	ASST	8 cut(s)	21, 52, 72, 129, 186, 193, 259, 325
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	3 cut(s)	265, 275, 354
SspMI	CTAG	2 cut(s)	162, 324
StyD4I	CCNGG	3 cut(s)	226, 244, 253
StyI	CCWWGG	2 cut(s)	61, 175
TasI	AATT	3 cut(s)	265, 275, 354
TfiI	GAWTC	2 cut(s)	53, 194
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	2 cut(s)	162, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.