FvH4_6g35330

Auxin-repressed 12.5 kDa

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005839
Physical Location & Seq
Reverse (-)
27895103 .. 27897245
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35330.t2

Sequence Viewer

Length: 348 bp
ATGGGTTTTCTTCACAAGCTTTGGGATGAAACGCTCGCCGGCCCCGCACCGGAGTCCGGCCTCGGCAAGCTCCGTAAGTTCGACACCTTCTCCAACCCGCCCTCGGCCCCTATGGTTGCTGCCGATGAGGCGCCAGTTGTCACTCGGAGCATTACTATTCTTAGGACTCATTCTTCCAACCTTGGAAACTTTCCGGTGGATTCTGGCTCCCCCTCCGAGTCTCCCACCACGCCGGGAACGCCGGTCTCACCGGGAACAGCAACAAGAAACTTCAGGAAACTAACAAGGAGAAAATCGTCCACTGATGCATTGCAACGCGCCGAACCTAGAAGTCCGACTGGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_repressed

Protein Analysis

116

Amino Acids

12.3

Weight (kDa)

10.13

Isoelectric Point (pI)

71.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_repressed PF05564 7 - 119 2.3e-10 Dormancy/auxin associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccII CGCG 1 cut(s) 318
AciI CCGC 2 cut(s) 45, 98
AcuI CTGAAG 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 131
AfiI CCNNNNNNNGG 3 cut(s) 49, 56, 103
AluBI AGCT 2 cut(s) 19, 70
AluI AGCT 2 cut(s) 19, 70
Alw26I GTCTC 2 cut(s) 225, 250
AoxI GGCC 3 cut(s) 40, 58, 105
ApeKI GCWGC 1 cut(s) 119
AspLEI GCGC 2 cut(s) 133, 320
AspS9I GGNCC 2 cut(s) 41, 106
AsuC2I CCSGG 2 cut(s) 234, 252
AsuHPI GGTGA 1 cut(s) 240
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 336
BcnI CCSGG 2 cut(s) 234, 252
BcoDI GTCTC 2 cut(s) 225, 250
BfaI CTAG 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 234, 252
BmgT120I GGNCC 2 cut(s) 41, 106
BmiI GGNNCC 4 cut(s) 43, 108, 132, 208
BmrFI CCNGG 2 cut(s) 234, 252
BmsI GCATC 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 234, 252
BsaHI GRCGYC 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 250
BsaJI CCNNGG 3 cut(s) 61, 102, 181
BsaWI WCCGGW 2 cut(s) 49, 193
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 56, 103
Bse118I RCCGGY 2 cut(s) 38, 241
Bse1I ACTGG 2 cut(s) 134, 343
Bse3DI GCAATG 1 cut(s) 308
BseDI CCNNGG 3 cut(s) 61, 102, 181
BseGI GGATG 2 cut(s) 31, 347
BseLI CCNNNNNNNGG 3 cut(s) 49, 56, 103
BseMI GCAATG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 134, 343
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 3 cut(s) 42, 60, 107
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 7 cut(s) 39, 50, 57, 194, 233, 242, 251
BslI CCNNNNNNNGG 3 cut(s) 49, 56, 103
BsmAI GTCTC 2 cut(s) 225, 250
BsnI GGCC 3 cut(s) 42, 60, 107
Bso31I GGTCTC 1 cut(s) 250
BspACI CCGC 2 cut(s) 45, 98
BspANI GGCC 3 cut(s) 42, 60, 107
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 4 cut(s) 43, 108, 132, 208
BspT107I GGYRCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 308
BsrFI RCCGGY 2 cut(s) 38, 241
BsrI ACTGG 2 cut(s) 134, 343
BssAI RCCGGY 2 cut(s) 38, 241
BssECI CCNNGG 3 cut(s) 61, 102, 181
BssNI GRCGYC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 36, 40, 68
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 2 cut(s) 31, 347
BstFNI CGCG 1 cut(s) 318
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 2 cut(s) 133, 320
BstMAI GTCTC 2 cut(s) 225, 250
BstMWI GCNNNNNNNGC 3 cut(s) 44, 128, 238
BstSCI CCNGG 2 cut(s) 232, 250
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 42, 60, 107
BtsCI GGATG 2 cut(s) 31, 347
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 3 cut(s) 36, 40, 68
CfoI GCGC 2 cut(s) 133, 320
Cfr10I RCCGGY 2 cut(s) 38, 241
Cfr13I GGNCC 2 cut(s) 41, 106
CviJI RGCY 6 cut(s) 19, 42, 60, 70, 107, 207
CviKI_1 RGCY 6 cut(s) 19, 42, 60, 70, 107, 207
DdeI CTNAG 1 cut(s) 161
DinI GGCGCC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 310
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 181
FaiI YATR 1 cut(s) 113
FauI CCCGC 2 cut(s) 52, 105
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 132, 319
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 3 cut(s) 42, 60, 107
HapII CCGG 7 cut(s) 39, 50, 57, 194, 233, 242, 251
HhaI GCGC 2 cut(s) 133, 320
Hin1I GRCGYC 1 cut(s) 131
Hin6I GCGC 2 cut(s) 131, 318
HinP1I GCGC 2 cut(s) 131, 318
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 4 cut(s) 53, 166, 200, 218
HpaII CCGG 7 cut(s) 39, 50, 57, 194, 233, 242, 251
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 300
Hpy188I TCNGA 3 cut(s) 147, 217, 336
Hpy188III TCNNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 308, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 128, 238
HpyF3I CTNAG 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 131
HspAI GCGC 2 cut(s) 131, 318
KasI GGCGCC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
LmnI GCTCC 3 cut(s) 75, 147, 212
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 1 cut(s) 165
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 3 cut(s) 62, 160, 227
MmeI TCCRAC 2 cut(s) 117, 201
MnlI CCTC 4 cut(s) 71, 112, 121, 223
Mph1103I ATGCAT 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 38
MspI CCGG 7 cut(s) 39, 50, 57, 194, 233, 242, 251
MspR9I CCNGG 2 cut(s) 234, 252
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 44, 128, 238
NaeI GCCGGC 1 cut(s) 40
NarI GGCGCC 1 cut(s) 131
NciI CCSGG 2 cut(s) 234, 252
NgoMIV GCCGGC 1 cut(s) 38
NlaIV GGNNCC 4 cut(s) 43, 108, 132, 208
NmeAIII GCCGAG 2 cut(s) 42, 83
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 310
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 3 cut(s) 61, 160, 226
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 3 cut(s) 61, 160, 226
PspN4I GGNNCC 4 cut(s) 43, 108, 132, 208
PspPI GGNCC 2 cut(s) 41, 106
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 41, 106
SchI GAGTC 3 cut(s) 62, 160, 227
ScrFI CCNGG 2 cut(s) 234, 252
SetI ASST 5 cut(s) 21, 72, 89, 183, 328
SfaNI GCATC 1 cut(s) 295
SfoI GGCGCC 1 cut(s) 132
SsiI CCGC 2 cut(s) 45, 98
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 2 cut(s) 232, 250
StyI CCWWGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 81
TfiI GAWTC 1 cut(s) 200
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 307
XspI CTAG 1 cut(s) 327
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.