AT1G54217

60S ribosomal protein L18a-like protein isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007636
Physical Location & Seq
Reverse (-)
20243883 .. 20245555
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54217.5

Sequence Viewer

Length: 309 bp
ATGAATTCGAATTTAGAGGAACAAAAGAAAGGAAAGTATGTTCTAATCCGTGATGATGCTGAGGACTCTGAGTTAGGACAATTCTATAAGCCCCTTCCTTGCTTCGGTTTTGGAATCGGATGGTTCTCGTTTCTTCTAGGATTCGTCTTCCCGTTTGCGTGGTACGTTGCTACATTTCTTTATTTGATCAGCTATTACCATAGAGATCCTCGGGAAAGATCTGGTCTTGCTGCCTCTGCTATAGCTGCTTTGATATTCTCTGTTGCACTTGTGATCACCGTGCTTGTGCTTGTTTTCTCGGGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

6.55

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 2 cut(s) 4, 10
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 104
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 2 cut(s) 192, 245
AluI AGCT 2 cut(s) 192, 245
AlwI GGATC 1 cut(s) 200
Ama87I CYCGRG 2 cut(s) 210, 298
ApeKI GCWGC 2 cut(s) 230, 245
ApoI RAATTY 2 cut(s) 4, 10
AsuHPI GGTGA 1 cut(s) 268
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 2 cut(s) 210, 298
BbsI GAAGAC 1 cut(s) 139
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 217, 232
BccI CCATC 1 cut(s) 114
BclI TGATCA 2 cut(s) 186, 273
BfaI CTAG 2 cut(s) 137, 307
BfmI CTRYAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 218
BisI GCNGC 2 cut(s) 231, 246
BlsI GCNGC 2 cut(s) 232, 247
BmeT110I CYCGRG 2 cut(s) 210, 298
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 51, 60
BseXI GCAGC 2 cut(s) 217, 232
BsiHKCI CYCGRG 2 cut(s) 210, 298
BslI CCNNNNNNNGG 1 cut(s) 104
BsoBI CYCGRG 2 cut(s) 210, 298
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 4 cut(s) 186, 205, 218, 273
BspCNI CTCAG 2 cut(s) 52, 61
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 4 cut(s) 186, 205, 218, 273
Bst4CI ACNGT 1 cut(s) 280
BstBI TTCGAA 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 60, 69
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 4 cut(s) 189, 208, 221, 276
BstMBI GATC 4 cut(s) 186, 205, 218, 273
BstMWI GCNNNNNNNGC 2 cut(s) 236, 245
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 217, 232
BstV2I GAAGAC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 205, 218
BstYI RGATCY 2 cut(s) 205, 218
BtsCI GGATG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 163
CviJI RGCY 3 cut(s) 91, 192, 245
CviKI_1 RGCY 3 cut(s) 91, 192, 245
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 60, 69
DpnI GATC 4 cut(s) 188, 207, 220, 275
DpnII GATC 4 cut(s) 186, 205, 218, 273
Eco88I CYCGRG 2 cut(s) 210, 298
EcoRI GAATTC 1 cut(s) 4
FaiI YATR 4 cut(s) 39, 87, 201, 242
FbaI TGATCA 2 cut(s) 186, 273
Fnu4HI GCNGC 2 cut(s) 231, 246
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 231, 246
FspBI CTAG 2 cut(s) 137, 307
GluI GCNGC 2 cut(s) 231, 246
HinfI GANTC 3 cut(s) 65, 114, 141
HphI GGTGA 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 70, 119
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 245
HpyF3I CTNAG 2 cut(s) 60, 69
HpySE526I ACGT 1 cut(s) 165
Ksp22I TGATCA 2 cut(s) 186, 273
Kzo9I GATC 4 cut(s) 186, 205, 218, 273
LpnPI CCDG 1 cut(s) 207
Lsp1109I GCAGC 2 cut(s) 217, 232
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 137, 307
MaeII ACGT 1 cut(s) 165
MalI GATC 4 cut(s) 188, 207, 220, 275
MboI GATC 4 cut(s) 186, 205, 218, 273
MboII GAAGA 2 cut(s) 125, 139
MflI RGATCY 2 cut(s) 205, 218
MluCI AATT 3 cut(s) 4, 10, 80
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 10, 55, 219, 244
MwoI GCNNNNNNNGC 2 cut(s) 236, 245
NdeII GATC 4 cut(s) 186, 205, 218, 273
NspV TTCGAA 1 cut(s) 8
PfeI GAWTC 2 cut(s) 114, 141
PkrI GCNGC 2 cut(s) 232, 247
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PsuI RGATCY 2 cut(s) 205, 218
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SatI GCNGC 2 cut(s) 231, 246
Sau3AI GATC 4 cut(s) 186, 205, 218, 273
SchI GAGTC 1 cut(s) 59
SetI ASST 3 cut(s) 168, 194, 247
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 240
SfuI TTCGAA 1 cut(s) 8
Sse9I AATT 3 cut(s) 4, 10, 80
SspMI CTAG 2 cut(s) 137, 307
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 4, 10, 80
TfiI GAWTC 2 cut(s) 114, 141
TseI GCWGC 2 cut(s) 230, 245
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 38
XapI RAATTY 2 cut(s) 4, 10
XspI CTAG 2 cut(s) 137, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.