FvH4_6g34190

60S ribosomal protein L18a-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
26983910 .. 26984982
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34190.t1

Sequence Viewer

Length: 282 bp
ATGGTTTTCGTGAGTCTTCCTGCTTTCACTGTTCTTGTATTCTGTATTTATTGTCTCTCCTTCTCCTTCTATCATGGATGGACCTTCTTGTGCAGACTTCTGCTTGGATTTGTATTTCCAGTGATGTGGTACTATGCTGCATTTCTATACTTTTGGAAATATTATGATAAAGACCCAAGGGAACGATCAGGGCTTGGTGCTTCAGCAGTAGCTGCTTTTGTTTGTACAGTTGCTGTCTTGGTAGCTGTAACTGTCATTGTTACCAAATCCTTGCTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.62

Weight (kDa)

8.76

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 2 cut(s) 131, 226
AluBI AGCT 2 cut(s) 212, 245
AluI AGCT 2 cut(s) 212, 245
Alw26I GTCTC 1 cut(s) 59
AlwNI CAGNNNCTG 2 cut(s) 212, 233
ApeKI GCWGC 3 cut(s) 137, 212, 274
AspS9I GGNCC 1 cut(s) 81
AvaII GGWCC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 124, 199, 261
BccI CCATC 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 3 cut(s) 138, 213, 275
BlsI GCNGC 3 cut(s) 139, 214, 276
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 124, 199, 261
BsgI GTGCAG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 176
Bst4CI ACNGT 3 cut(s) 31, 229, 253
BstAPI GCANNNNNTGC 1 cut(s) 212
BstAUI TGTACA 1 cut(s) 224
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 124, 199, 261
BstV2I GAAGAC 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 27, 126
CaiI CAGNNNCTG 2 cut(s) 212, 233
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 130, 225
CviAII CATG 1 cut(s) 74
CviJI RGCY 3 cut(s) 193, 212, 245
CviKI_1 RGCY 3 cut(s) 193, 212, 245
CviQI GTAC 2 cut(s) 130, 225
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 186
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 77
FaiI YATR 5 cut(s) 75, 135, 148, 165, 280
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 3 cut(s) 138, 213, 275
FokI GGATG 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 138, 213, 275
GluI GCNGC 3 cut(s) 138, 213, 275
Hin1II CATG 1 cut(s) 77
HinfI GANTC 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 70, 76, 94
HpyCH4III ACNGT 3 cut(s) 31, 229, 253
HpyCH4V TGCA 2 cut(s) 93, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 185
LpnPI CCDG 3 cut(s) 33, 132, 174
Lsp1109I GCAGC 3 cut(s) 124, 199, 261
MaeIII GTNAC 2 cut(s) 247, 259
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 212
NdeII GATC 1 cut(s) 185
NlaIII CATG 1 cut(s) 77
PkrI GCNGC 3 cut(s) 139, 214, 276
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PspPI GGNCC 1 cut(s) 81
PstNI CAGNNNCTG 2 cut(s) 212, 233
RsaI GTAC 2 cut(s) 131, 226
RsaNI GTAC 2 cut(s) 130, 225
SatI GCNGC 3 cut(s) 138, 213, 275
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 81
SchI GAGTC 1 cut(s) 22
SetI ASST 3 cut(s) 86, 214, 247
SinI GGWCC 1 cut(s) 81
SspI AATATT 1 cut(s) 161
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 3 cut(s) 31, 229, 253
TatI WGTACW 1 cut(s) 224
TscAI CASTG 2 cut(s) 34, 126
TseI GCWGC 3 cut(s) 137, 212, 274
TspRI CASTG 2 cut(s) 34, 126
VpaK11BI GGWCC 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.