Prupe.3G044700_v2.0.a1

60S ribosomal protein L18a-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007636
Physical Location & Seq
Reverse (-)
3205852 .. 3210665
4814 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G044700.1

Sequence Viewer

Length: 306 bp
ATGGATCAGATGAACCATAGAAATGGCAACTATTCTCCTATCAGGGATCAAGAGGACCCGATATTGGGAATATTTGACAAACCGCTTCCTTGCTTTGGTTGTGGAATTGGATGGTTTTCTCTTTTGCTTGGATTTGTATTTCCAGTGATGTGGTACTACGCTGCATTTCTCTACTTTGGGAAGTATTACCATAGAGACCCAAGGGAGCGAACTGGGCTCCAAGCTTCAGCAATAGCTGCTTTGATATGTACAACTGCTGTGTTCATAGTGGTAGCTGTCTTTGTTTTCAAATCCTTTCTCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.55

Weight (kDa)

7.72

Isoelectric Point (pI)

32.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 83
AclWI GGATC 2 cut(s) 12, 54
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 155, 250
AfiI CCNNNNNNNGG 3 cut(s) 64, 65, 95
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 3 cut(s) 224, 236, 275
AluI AGCT 3 cut(s) 224, 236, 275
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 2 cut(s) 12, 54
ApeKI GCWGC 2 cut(s) 161, 236
AspS9I GGNCC 1 cut(s) 55
AvaII GGWCC 1 cut(s) 55
BanII GRGCYC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 148, 223
BccI CCATC 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 189
BisI GCNGC 2 cut(s) 162, 237
BlsI GCNGC 2 cut(s) 163, 238
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 57, 218
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 200
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 65, 95
Bse1I ACTGG 2 cut(s) 143, 217
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 3 cut(s) 64, 65, 95
BseNI ACTGG 2 cut(s) 143, 217
BseXI GCAGC 2 cut(s) 148, 223
BslI CCNNNNNNNGG 3 cut(s) 64, 65, 95
BsmAI GTCTC 1 cut(s) 189
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 2 cut(s) 4, 46
BspACI CCGC 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 57, 218
BspPI GGATC 2 cut(s) 12, 54
BspTNI GGTCTC 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 248
BsrI ACTGG 2 cut(s) 143, 217
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 4, 46
BssT1I CCWWGG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 248
BstF5I GGATG 1 cut(s) 116
BstKTI GATC 2 cut(s) 7, 49
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 4, 46
BstMWI GCNNNNNNNGC 2 cut(s) 214, 236
BstV1I GCAGC 2 cut(s) 148, 223
BstXI CCANNNNNNTGG 2 cut(s) 23, 150
BtsCI GGATG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 154, 249
CviJI RGCY 4 cut(s) 217, 224, 236, 275
CviKI_1 RGCY 4 cut(s) 217, 224, 236, 275
CviQI GTAC 2 cut(s) 154, 249
DpnI GATC 2 cut(s) 6, 48
DpnII GATC 2 cut(s) 4, 46
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 200
FaiI YATR 5 cut(s) 18, 192, 247, 266, 304
Fnu4HI GCNGC 2 cut(s) 162, 237
FokI GGATG 1 cut(s) 123
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 2 cut(s) 162, 237
GluI GCNGC 2 cut(s) 162, 237
HindIII AAGCTT 1 cut(s) 222
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 236
Kzo9I GATC 2 cut(s) 4, 46
LmnI GCTCC 2 cut(s) 205, 222
LpnPI CCDG 3 cut(s) 28, 156, 198
Lsp1109I GCAGC 2 cut(s) 148, 223
MalI GATC 2 cut(s) 6, 48
MboI GATC 2 cut(s) 4, 46
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 105
MnlI CCTC 1 cut(s) 46
MslI CAYNNNNRTG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 214, 236
NdeII GATC 2 cut(s) 4, 46
NlaIV GGNNCC 2 cut(s) 57, 218
PkrI GCNGC 2 cut(s) 163, 238
PpuMI RGGWCCY 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 57, 218
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 155, 250
RsaNI GTAC 2 cut(s) 154, 249
RseI CAYNNNNRTG 1 cut(s) 21
SatI GCNGC 2 cut(s) 162, 237
Sau3AI GATC 2 cut(s) 4, 46
Sau96I GGNCC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 219
SetI ASST 3 cut(s) 226, 238, 277
SgeI CNNG 9 cut(s) 55, 62, 70, 102, 140, 155, 213, 225, 233
SinI GGWCC 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 83
SspI AATATT 1 cut(s) 72
StyI CCWWGG 1 cut(s) 200
TasI AATT 1 cut(s) 105
TatI WGTACW 1 cut(s) 248
TscAI CASTG 1 cut(s) 150
TseI GCWGC 2 cut(s) 161, 236
TspDTI ATGAA 2 cut(s) 26, 253
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.