pycom17g16970

60S ribosomal protein L18a-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007636
Physical Location & Seq
Reverse (-)
14890037 .. 14891703
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16970.3

Sequence Viewer

Length: 324 bp
ATGGATCAGAGGATCTCAACAGATGTAGTGAACCATACAAGTGGCGACTATGCTCCTATTGGTGACCAAGAGGACCCGAAATTGGGAATGTTTGACAAACCCCTTCCTTGCTTTGGCTGGGGAATTGGATGGTTTTCTCTTCTGCTTGGATTTGTATTTCCAGTGATGTGGTACTATGCCACATTTCTTTACTTTTCGAAGTATTATCAAAAAGACCCAAGGGAACGAACTGGACTTGAAGCGTCAGCAGTAGCAGCTTTGATTTGTACAGTTGCTGTGTTAATAGTGCTTGCTGTCTTTGTTATCAAGGCTTTGTTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

5.11

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 20
AfaI GTAC 2 cut(s) 173, 268
AfiI CCNNNNNNNGG 3 cut(s) 82, 83, 113
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AlwI GGATC 2 cut(s) 12, 20
AlwNI CAGNNNCTG 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 123
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 83, 113
Bse1I ACTGG 2 cut(s) 161, 235
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 82, 83, 113
BseNI ACTGG 2 cut(s) 161, 235
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 82, 83, 113
Bsp119I TTCGAA 1 cut(s) 197
Bsp1407I TGTACA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 4, 12
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 2 cut(s) 12, 20
BspT104I TTCGAA 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 266
BsrI ACTGG 2 cut(s) 161, 235
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 4, 12
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 144
BstAUI TGTACA 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 291
BstEII GGTNACC 1 cut(s) 62
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 2 cut(s) 7, 15
BstMBI GATC 2 cut(s) 4, 12
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 12
BstXI CCANNNNNNTGG 2 cut(s) 41, 168
BstYI RGATCY 1 cut(s) 12
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 1 cut(s) 231
Csp6I GTAC 2 cut(s) 172, 267
CviJI RGCY 3 cut(s) 117, 257, 311
CviKI_1 RGCY 3 cut(s) 117, 257, 311
CviQI GTAC 2 cut(s) 172, 267
DpnI GATC 2 cut(s) 6, 14
DpnII GATC 2 cut(s) 4, 12
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaiI YATR 3 cut(s) 36, 51, 177
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 255
GsaI CCCAGC 1 cut(s) 121
HgaI GACGC 1 cut(s) 231
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
Kzo9I GATC 2 cut(s) 4, 12
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 3 cut(s) 103, 174, 216
Lsp1109I GCAGC 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 62
MalI GATC 2 cut(s) 6, 14
MboI GATC 2 cut(s) 4, 12
MboII GAAGA 1 cut(s) 131
MflI RGATCY 1 cut(s) 12
MluCI AATT 2 cut(s) 80, 123
MnlI CCTC 2 cut(s) 3, 64
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 2 cut(s) 4, 12
NlaIV GGNNCC 1 cut(s) 75
NmuCI GTSAC 1 cut(s) 62
NspV TTCGAA 1 cut(s) 197
PkrI GCNGC 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 73
PspEI GGTNACC 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 73
PspPPI RGGWCCY 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 2 cut(s) 173, 268
RsaNI GTAC 2 cut(s) 172, 267
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 2 cut(s) 4, 12
Sau96I GGNCC 1 cut(s) 73
SetI ASST 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 197
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 2 cut(s) 80, 123
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 80, 123
TatI WGTACW 1 cut(s) 266
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 62
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.