RLG00000020087

60S ribosomal protein L18a-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0007636
Physical Location & Seq
Forward (+)
60881850 .. 60883538
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020087

Sequence Viewer

Length: 324 bp
ATGGATCAGAGGCTCTCAACAGATGCAATGAACCATACGAATGGCAACTATGTTCGTATCGATGGTCCAGAGGACCCAGAGTTGGGAATGTTTGACAAACCCCTTCCTTTTTGTGGTTGTGGAATTGGATGGTTTTCACTTCTGCTTGGATTTGTCTTCCCAGTGATGTGGTACTATGCTGCATTTCTCTACTTTTATAAATATTATGATAAAGACCCAAGGGAACGATCAGGGCTTGGTGCTTCGGCAGTAGCTGCTTCGGTTTGTACAGTTGGTGTTTTGATAGCCGTGATAGTCATTGTTATCAAATCCTTGCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

5.48

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AclWI GGATC 1 cut(s) 12
AfaI GTAC 2 cut(s) 173, 268
AfiI CCNNNNNNNGG 3 cut(s) 82, 83, 113
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 179, 254
AspS9I GGNCC 2 cut(s) 65, 73
AvaII GGWCC 2 cut(s) 65, 73
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 166, 241
BccI CCATC 2 cut(s) 56, 123
BceAI ACGGC 1 cut(s) 272
BisI GCNGC 2 cut(s) 180, 255
BlsI GCNGC 2 cut(s) 181, 256
Bme18I GGWCC 2 cut(s) 65, 73
BmgT120I GGNCC 2 cut(s) 65, 73
BmiI GGNNCC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 83, 113
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 2 cut(s) 134, 316
BseLI CCNNNNNNNGG 3 cut(s) 82, 83, 113
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 166, 241
BshVI ATCGAT 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 82, 83, 113
Bsp1407I TGTACA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 4, 227
BspDI ATCGAT 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 33
BsrGI TGTACA 1 cut(s) 266
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 4, 227
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 271
BstAPI GCANNNNNTGC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 266
BstF5I GGATG 2 cut(s) 134, 316
BstKTI GATC 2 cut(s) 7, 230
BstMBI GATC 2 cut(s) 4, 227
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 2 cut(s) 166, 241
BstV2I GAAGAC 1 cut(s) 148
BstXI CCANNNNNNTGG 2 cut(s) 41, 168
Bsu15I ATCGAT 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 2 cut(s) 134, 316
BtsIMutI CAGTG 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 65, 73
ClaI ATCGAT 1 cut(s) 60
Csp6I GTAC 2 cut(s) 172, 267
CviJI RGCY 4 cut(s) 13, 235, 254, 287
CviKI_1 RGCY 4 cut(s) 13, 235, 254, 287
CviQI GTAC 2 cut(s) 172, 267
DpnI GATC 2 cut(s) 6, 229
DpnII GATC 2 cut(s) 4, 227
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 65, 73
EcoO109I RGGNCCY 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaiI YATR 6 cut(s) 36, 51, 177, 198, 207, 322
Fnu4HI GCNGC 2 cut(s) 180, 255
FokI GGATG 2 cut(s) 141, 303
Fsp4HI GCNGC 2 cut(s) 180, 255
GluI GCNGC 2 cut(s) 180, 255
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 26, 182, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
Kzo9I GATC 2 cut(s) 4, 227
LpnPI CCDG 4 cut(s) 81, 90, 174, 216
Lsp1109I GCAGC 2 cut(s) 166, 241
LweI GCATC 1 cut(s) 13
MalI GATC 2 cut(s) 6, 229
MboI GATC 2 cut(s) 4, 227
MboII GAAGA 1 cut(s) 148
MluCI AATT 1 cut(s) 123
MnlI CCTC 2 cut(s) 3, 64
MslI CAYNNNNRTG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 2 cut(s) 4, 227
NlaIV GGNNCC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 181, 256
PpuMI RGGWCCY 1 cut(s) 73
PsiI TTATAA 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 65, 73
PspPPI RGGWCCY 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 173, 268
RsaNI GTAC 2 cut(s) 172, 267
RseI CAYNNNNRTG 1 cut(s) 39
SatI GCNGC 2 cut(s) 180, 255
Sau3AI GATC 2 cut(s) 4, 227
Sau96I GGNCC 2 cut(s) 65, 73
SetI ASST 1 cut(s) 256
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 8 cut(s) 80, 89, 158, 173, 231, 243, 248, 301
SinI GGWCC 2 cut(s) 65, 73
SmiMI CAYNNNNRTG 1 cut(s) 39
Sse9I AATT 1 cut(s) 123
SspI AATATT 1 cut(s) 203
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 266
TscAI CASTG 1 cut(s) 168
TseI GCWGC 2 cut(s) 179, 254
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 65, 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.