Rh2AG439700

60S ribosomal protein L18a-like protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
65039880 .. 65044437
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG439700.1

Sequence Viewer

Length: 270 bp
ATGGATCAGAGGCTCTCAACAGATGCAATGAACAGTACGAATGGCAACTATGTTCGTATCGATGGTCCAGAGGACCCAGAGTTGGGAATGTTTGACAAACCCCTTCCTTTTTGTGGTTGTGGAATTGGATGGTTTTCACTTCTGCTTGGATTTGTATTCCCAGTGATGTGGTACTATGCTGCATTTCTCTACTTTTATAAATATTATGATAAAGACCCAAGGGAACGATCTGGGCTTGGTGCTTCGGCAGTAGCTGTAAGTTTATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.06

Weight (kDa)

4.57

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AclWI GGATC 1 cut(s) 12
AfaI GTAC 2 cut(s) 37, 173
AfiI CCNNNNNNNGG 3 cut(s) 82, 83, 113
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 65, 73
AvaII GGWCC 2 cut(s) 65, 73
BbvI GCAGC 1 cut(s) 166
BccI CCATC 2 cut(s) 56, 123
BfaI CTAG 1 cut(s) 268
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 2 cut(s) 65, 73
BmgT120I GGNCC 2 cut(s) 65, 73
BmiI GGNNCC 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 83, 113
Bse1I ACTGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 82, 83, 113
BseMI GCAATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 166
BshVI ATCGAT 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 82, 83, 113
Bsp143I GATC 2 cut(s) 4, 227
BspDI ATCGAT 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 75
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 4, 227
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 35
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 2 cut(s) 7, 230
BstMBI GATC 2 cut(s) 4, 227
BstV1I GCAGC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 168
Bsu15I ATCGAT 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 60
BtsCI GGATG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 65, 73
ClaI ATCGAT 1 cut(s) 60
Csp6I GTAC 2 cut(s) 36, 172
CviJI RGCY 3 cut(s) 13, 235, 254
CviKI_1 RGCY 3 cut(s) 13, 235, 254
CviQI GTAC 2 cut(s) 36, 172
DpnI GATC 2 cut(s) 6, 229
DpnII GATC 2 cut(s) 4, 227
Eco130I CCWWGG 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 65, 73
EcoO109I RGGNCCY 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaiI YATR 5 cut(s) 51, 177, 198, 207, 265
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 268
GluI GCNGC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 26, 182
Kzo9I GATC 2 cut(s) 4, 227
LpnPI CCDG 4 cut(s) 81, 90, 174, 216
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 268
MalI GATC 2 cut(s) 6, 229
MboI GATC 2 cut(s) 4, 227
MluCI AATT 1 cut(s) 123
MnlI CCTC 2 cut(s) 3, 64
NdeII GATC 2 cut(s) 4, 227
NlaIV GGNNCC 1 cut(s) 75
PkrI GCNGC 1 cut(s) 181
PpuMI RGGWCCY 1 cut(s) 73
PsiI TTATAA 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 65, 73
PspPPI RGGWCCY 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 254
RsaI GTAC 2 cut(s) 37, 173
RsaNI GTAC 2 cut(s) 36, 172
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 4, 227
Sau96I GGNCC 2 cut(s) 65, 73
SetI ASST 1 cut(s) 256
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 7 cut(s) 80, 89, 158, 173, 231, 243, 248
SinI GGWCC 2 cut(s) 65, 73
Sse9I AATT 1 cut(s) 123
SspI AATATT 1 cut(s) 203
SspMI CTAG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 35
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 123
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 44
TspRI CASTG 1 cut(s) 168
VpaK11BI GGWCC 2 cut(s) 65, 73
XspI CTAG 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.