Rorug02G0387700

60S ribosomal protein L18a-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
49474788 .. 49476503
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0387700.1

Sequence Viewer

Length: 1392 bp
ATGGAAGAAGCGTCACTCTCCTCCTTCACCACCACTACCCCTTGGAACCGATGGCGCCACCACCTCCGCCTCAAGACCACCCTCTGCGCCGAACTCTCCGGCGCAGTCGGCGACCTCGGCACCTACATCCCCATCGTCCTGGCCCTCACCTTAGTCTCCCACCTAGACCTCAGCACCACCCTCATCTTCACCTCCCTCTACAACTTCGCCACCGGCCTCCTCTTCGGCATCCCCATGCCCGTCCAGCCCATGAAGTCCATCGCCGCCGTCGCCATCTCCGAGTCCCCACACCTCACCCTCCCCCAGATCGCCGCCGCCGGCCTTTCCACCGCTGCCGTCCTTCTCCTCCTCGGCGCCACCGGCCTCATGTCCTTCCTCTACCGCTTCATCCCCTTGCCCGTCGTCCGCGGCGTCCAGCTCTCCCAGGGCCTGGCCTTCGCCTTCTCCGCCATCAAATACATCAGATTCGAACAAGACCTCGCCGCCTCCAAGTCCGGCTCCTCCCGCCCCTGGCTCGGCCTCGACGGCCTTATCGTCGCCCTAAGCGCGCTGCTGTTTCTGATCCTCACCACCGGCTCCGGCGATCACGCCGATCAAACGCAACACCCGGTTGATTTATTGCCGCTTTCTCAATCTCGTCTCCGCAGAAGGTTAAAGATACTCTCCTCCATTCCTGCAGCTCTGATAGTCTTCTTATTCGGGTTAGTCCTCTGCTTTATCCGCGACACTTCCATTTTCGGCGACCTCAAATTCGGCCCCTCCAAAATCCAAGTGCTCAAAATCACATGGGAGGATTGGAAAATCGGGTTTCTCCGCGGAGCAATTCCCCAAATCCCCTTATCAATTTTGAACTCTGTGATTGCGGTTTGCAAATTATCAGGTGATTTATTCCCGGATCGGGAAGCTTCGGCCAGGACTGTTTCGATCAGTGTTGGCATCATGAACTTTGTTGGGTGCTGGTTCGGGGCAATGCCGGTGTGCCATGGAGCCGGTGGGCTAGCCGGGCAGTACCGATTCGGGGGCCGGAGTGGCGCTTCTGTTGTGTTCTTGGGGATTGGTAAACTGGTGCTTGCTTTGGTGTTTGGGAATTCATTTGTGATTATTTTGAGTCAGTTTCCAATTGGGATTCTTGGGGTGCTTTTGCTGTTTGCTGGGATTGAATTGGCTATGGCGTCCAAGGACATGAATACGAAAGAAGAGTCGTTTGTGATGTTGGTCTGTGCTGCGGTTTCATTGACAGGATCTAGCTCTGCGCTGGGGTTTGGGTGTGGGATTGTGCTGTTCTTGGTGCTCAAGTTGAGGCAGATGGAGTTTTCTACTTCTGGGTTTGGATCTCCCAAACTGAAATCGGAATCGGCCATAGCTGATGCAACTACTAGCTTGATTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

49.31

Weight (kDa)

9.18

Isoelectric Point (pI)

30.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_MOT1 PF16983 30 - 145 2.4e-24 Molybdate transporter of MFS superfamily
MFS_MOT1 PF16983 270 - 388 1.9e-36 Molybdate transporter of MFS superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 54, 119, 353
AccB7I CCANNNNNTGG 1 cut(s) 430
AccII CGCG 4 cut(s) 408, 548, 723, 816
AclWI GGATC 4 cut(s) 556, 903, 1249, 1339
AcoI YGGCCR 2 cut(s) 909, 1356
AcsI RAATTY 2 cut(s) 749, 1087
AcyI GRCGYC 4 cut(s) 55, 354, 411, 1172
AfaI GTAC 1 cut(s) 1010
AfiI CCNNNNNNNGG 5 cut(s) 430, 510, 515, 898, 1018
AgsI TTSAA 2 cut(s) 850, 1160
AjnI CCWGG 5 cut(s) 138, 423, 429, 509, 911
AluBI AGCT 6 cut(s) 418, 680, 905, 1248, 1364, 1380
AluI AGCT 6 cut(s) 418, 680, 905, 1248, 1364, 1380
Alw21I GWGCWC 2 cut(s) 777, 1293
Alw26I GTCTC 2 cut(s) 160, 644
AlwI GGATC 4 cut(s) 556, 903, 1249, 1339
AlwNI CAGNNNCTG 1 cut(s) 430
ApeKI GCWGC 4 cut(s) 332, 550, 677, 1223
ApoI RAATTY 2 cut(s) 749, 1087
ArsI GACNNNNNNTTYG 4 cut(s) 734, 766, 1184, 1216
AspLEI GCGC 8 cut(s) 57, 89, 104, 356, 548, 550, 1034, 1255
AspS9I GGNCC 4 cut(s) 142, 427, 755, 1021
AsuC2I CCSGG 3 cut(s) 608, 893, 1003
AsuHPI GGTGA 6 cut(s) 19, 139, 181, 286, 559, 893
AsuII TTCGAA 1 cut(s) 468
AsuNHI GCTAGC 1 cut(s) 997
BanI GGYRCC 3 cut(s) 54, 119, 353
BbsI GAAGAC 1 cut(s) 682
Bbv12I GWGCWC 2 cut(s) 777, 1293
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 319, 537, 689, 1210
BccI CCATC 6 cut(s) 45, 140, 266, 281, 458, 1300
BceAI ACGGC 3 cut(s) 251, 320, 541
BciT130I CCWGG 5 cut(s) 140, 425, 431, 511, 913
BcnI CCSGG 3 cut(s) 608, 893, 1003
BcoDI GTCTC 2 cut(s) 160, 644
BfaI CTAG 4 cut(s) 164, 998, 1245, 1377
BfmI CTRYAG 1 cut(s) 675
BfoI RGCGCY 3 cut(s) 58, 357, 1035
BglI GCCNNNNNGGC 2 cut(s) 525, 1029
Bme1390I CCNGG 8 cut(s) 140, 425, 431, 511, 608, 893, 913, 1003
BmgT120I GGNCC 4 cut(s) 142, 427, 755, 1021
BmiI GGNNCC 9 cut(s) 47, 56, 121, 355, 499, 577, 757, 988, 1022
BmrFI CCNGG 8 cut(s) 140, 425, 431, 511, 608, 893, 913, 1003
BmsI GCATC 3 cut(s) 237, 945, 1357
BmtI GCTAGC 1 cut(s) 1001
BpiI GAAGAC 1 cut(s) 682
Bpu10I CCTNAGC 2 cut(s) 170, 542
Bpu14I TTCGAA 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 56, 1277
BpuMI CCSGG 3 cut(s) 608, 893, 1003
BsaHI GRCGYC 4 cut(s) 55, 354, 411, 1172
Bsc4I CCNNNNNNNGG 5 cut(s) 430, 510, 515, 898, 1018
Bse118I RCCGGY 6 cut(s) 212, 317, 359, 572, 973, 989
Bse1I ACTGG 1 cut(s) 1068
Bse3DI GCAATG 1 cut(s) 975
BseBI CCWGG 5 cut(s) 140, 425, 431, 511, 913
BseGI GGATG 3 cut(s) 126, 228, 387
BseLI CCNNNNNNNGG 5 cut(s) 430, 510, 515, 898, 1018
BseMI GCAATG 1 cut(s) 975
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 1068
BsePI GCGCGC 1 cut(s) 546
BseRI GAGGAG 6 cut(s) 10, 209, 335, 338, 490, 655
BseXI GCAGC 4 cut(s) 319, 537, 689, 1210
BseYI CCCAGC 2 cut(s) 1151, 1255
Bsh1236I CGCG 4 cut(s) 408, 548, 723, 816
BshNI GGYRCC 3 cut(s) 54, 119, 353
BsiHKAI GWGCWC 2 cut(s) 777, 1293
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 5 cut(s) 430, 510, 515, 898, 1018
BsmAI GTCTC 2 cut(s) 160, 644
BsmBI CGTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 268
Bsp119I TTCGAA 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 777, 1293
Bsp143I GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
Bsp19I CCATGG 1 cut(s) 982
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 4 cut(s) 408, 548, 723, 816
BspHI TCATGA 1 cut(s) 939
BspLI GGNNCC 9 cut(s) 47, 56, 121, 355, 499, 577, 757, 988, 1022
BspMAI CTGCAG 1 cut(s) 679
BspOI GCTAGC 1 cut(s) 1001
BspPI GGATC 4 cut(s) 556, 903, 1249, 1339
BspT104I TTCGAA 1 cut(s) 468
BspT107I GGYRCC 3 cut(s) 54, 119, 353
BsrDI GCAATG 1 cut(s) 975
BsrFI RCCGGY 6 cut(s) 212, 317, 359, 572, 973, 989
BsrI ACTGG 1 cut(s) 1068
BssAI RCCGGY 6 cut(s) 212, 317, 359, 572, 973, 989
BssHII GCGCGC 1 cut(s) 546
BssMI GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
BssNI GRCGYC 4 cut(s) 55, 354, 411, 1172
BssT1I CCWWGG 3 cut(s) 41, 982, 1176
Bst2UI CCWGG 5 cut(s) 140, 425, 431, 511, 913
Bst4CI ACNGT 1 cut(s) 919
Bst6I CTCTTC 2 cut(s) 227, 1191
BstACI GRCGYC 4 cut(s) 55, 354, 411, 1172
BstBI TTCGAA 1 cut(s) 468
BstC8I GCNNGC 4 cut(s) 319, 548, 999, 1071
BstDEI CTNAG 3 cut(s) 151, 170, 542
BstDSI CCRYGG 3 cut(s) 406, 814, 982
BstF5I GGATG 3 cut(s) 126, 228, 387
BstFNI CGCG 4 cut(s) 408, 548, 723, 816
BstH2I RGCGCY 3 cut(s) 58, 357, 1035
BstHHI GCGC 8 cut(s) 57, 89, 104, 356, 548, 550, 1034, 1255
BstKTI GATC 8 cut(s) 309, 564, 586, 595, 898, 927, 1244, 1334
BstMAI GTCTC 2 cut(s) 160, 644
BstMBI GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
BstNI CCWGG 5 cut(s) 140, 425, 431, 511, 913
BstSCI CCNGG 8 cut(s) 138, 423, 429, 509, 606, 891, 911, 1001
BstSFI CTRYAG 1 cut(s) 675
BstUI CGCG 4 cut(s) 408, 548, 723, 816
BstV1I GCAGC 4 cut(s) 319, 537, 689, 1210
BstV2I GAAGAC 1 cut(s) 682
BstX2I RGATCY 2 cut(s) 1241, 1331
BstXI CCANNNNNNTGG 1 cut(s) 139
BstYI RGATCY 2 cut(s) 1241, 1331
BtgI CCRYGG 3 cut(s) 406, 814, 982
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 126, 228, 387
BtsIMutI CAGTG 1 cut(s) 934
Cac8I GCNNGC 4 cut(s) 319, 548, 999, 1071
CaiI CAGNNNCTG 1 cut(s) 430
CciI TCATGA 1 cut(s) 939
CfoI GCGC 8 cut(s) 57, 89, 104, 356, 548, 550, 1034, 1255
Cfr10I RCCGGY 6 cut(s) 212, 317, 359, 572, 973, 989
Cfr13I GGNCC 4 cut(s) 142, 427, 755, 1021
Cfr42I CCGCGG 2 cut(s) 409, 817
CseI GACGC 2 cut(s) 400, 1161
Csp6I GTAC 1 cut(s) 1009
CviAII CATG 7 cut(s) 235, 250, 367, 786, 940, 983, 1183
CviQI GTAC 1 cut(s) 1009
DdeI CTNAG 3 cut(s) 151, 170, 542
DinI GGCGCC 2 cut(s) 56, 355
DpnI GATC 8 cut(s) 308, 563, 585, 594, 897, 926, 1243, 1333
DpnII GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
EaeI YGGCCR 2 cut(s) 909, 1356
Eam1104I CTCTTC 2 cut(s) 227, 1191
EarI CTCTTC 2 cut(s) 227, 1191
EciI GGCGGA 2 cut(s) 56, 436
Eco130I CCWWGG 3 cut(s) 41, 982, 1176
EcoO109I RGGNCCY 1 cut(s) 427
EcoRI GAATTC 1 cut(s) 1087
EcoRII CCWGG 5 cut(s) 138, 423, 429, 509, 911
EcoT14I CCWWGG 3 cut(s) 41, 982, 1176
EgeI GGCGCC 2 cut(s) 56, 355
EheI GGCGCC 2 cut(s) 56, 355
ErhI CCWWGG 3 cut(s) 41, 982, 1176
Esp3I CGTCTC 1 cut(s) 644
FaeI CATG 7 cut(s) 238, 253, 370, 789, 943, 986, 1186
FaiI YATR 9 cut(s) 236, 251, 368, 787, 941, 984, 1169, 1184, 1361
FaqI GGGAC 1 cut(s) 268
FatI CATG 7 cut(s) 234, 249, 366, 785, 939, 982, 1182
FauI CCCGC 1 cut(s) 512
FokI GGATG 3 cut(s) 113, 215, 374
FspBI CTAG 4 cut(s) 164, 998, 1245, 1377
GlaI GCGC 8 cut(s) 56, 88, 103, 355, 547, 549, 1033, 1254
GsaI CCCAGC 2 cut(s) 1155, 1259
HaeII RGCGCY 3 cut(s) 58, 357, 1035
HgaI GACGC 2 cut(s) 400, 1161
HhaI GCGC 8 cut(s) 57, 89, 104, 356, 548, 550, 1034, 1255
Hin1I GRCGYC 4 cut(s) 55, 354, 411, 1172
Hin1II CATG 7 cut(s) 238, 253, 370, 789, 943, 986, 1186
Hin6I GCGC 8 cut(s) 55, 87, 102, 354, 546, 548, 1032, 1253
HinP1I GCGC 8 cut(s) 55, 87, 102, 354, 546, 548, 1032, 1253
HindIII AAGCTT 1 cut(s) 903
HinfI GANTC 8 cut(s) 281, 465, 1014, 1108, 1126, 1199, 1352, 1384
HphI GGTGA 6 cut(s) 19, 139, 181, 286, 559, 893
Hpy166II GTNNAC 1 cut(s) 1061
Hpy188I TCNGA 5 cut(s) 280, 464, 561, 684, 1351
Hpy188III TCNNGA 3 cut(s) 73, 899, 940
Hpy8I GTNNAC 1 cut(s) 1061
Hpy99I CGWCG 4 cut(s) 272, 404, 527, 539
HpyAV CCTTC 6 cut(s) 34, 350, 382, 445, 451, 642
HpyCH4III ACNGT 1 cut(s) 919
HpyCH4V TGCA 3 cut(s) 677, 870, 1370
HpyF3I CTNAG 3 cut(s) 151, 170, 542
Hsp92I GRCGYC 4 cut(s) 55, 354, 411, 1172
Hsp92II CATG 7 cut(s) 238, 253, 370, 789, 943, 986, 1186
HspAI GCGC 8 cut(s) 55, 87, 102, 354, 546, 548, 1032, 1253
KasI GGCGCC 2 cut(s) 54, 353
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
KspI CCGCGG 2 cut(s) 409, 817
Kzo9I GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
LmnI GCTCC 4 cut(s) 503, 581, 818, 986
Lsp1109I GCAGC 4 cut(s) 319, 537, 689, 1210
LweI GCATC 3 cut(s) 237, 945, 1357
MaeI CTAG 4 cut(s) 164, 998, 1245, 1377
MaeIII GTNAC 1 cut(s) 12
MalI GATC 8 cut(s) 308, 563, 585, 594, 897, 926, 1243, 1333
MboI GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
MboII GAAGA 5 cut(s) 17, 178, 214, 682, 1208
MfeI CAATTG 1 cut(s) 1119
MflI RGATCY 2 cut(s) 1241, 1331
MhlI GDGCHC 2 cut(s) 777, 1293
MluCI AATT 7 cut(s) 749, 822, 843, 872, 1087, 1119, 1160
Mly113I GGCGCC 2 cut(s) 55, 354
MlyI GAGTC 3 cut(s) 290, 1117, 1208
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 2 cut(s) 653, 1390
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 3 cut(s) 332, 408, 816
MspR9I CCNGG 8 cut(s) 140, 425, 431, 511, 608, 893, 913, 1003
MunI CAATTG 1 cut(s) 1119
MvaI CCWGG 5 cut(s) 140, 425, 431, 511, 913
MvnI CGCG 4 cut(s) 408, 548, 723, 816
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 2 cut(s) 55, 354
NciI CCSGG 3 cut(s) 608, 893, 1003
NcoI CCATGG 1 cut(s) 982
NdeII GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
NgoMIV GCCGGC 1 cut(s) 317
NheI GCTAGC 1 cut(s) 997
NlaIII CATG 7 cut(s) 238, 253, 370, 789, 943, 986, 1186
NlaIV GGNNCC 9 cut(s) 47, 56, 121, 355, 499, 577, 757, 988, 1022
NmeAIII GCCGAG 3 cut(s) 96, 330, 495
NmuCI GTSAC 1 cut(s) 12
NspV TTCGAA 1 cut(s) 468
PagI TCATGA 1 cut(s) 939
PasI CCCWGGG 1 cut(s) 424
PauI GCGCGC 1 cut(s) 546
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 408, 531
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 5 cut(s) 465, 1014, 1126, 1352, 1384
PflMI CCANNNNNTGG 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 891
PleI GAGTC 3 cut(s) 289, 1116, 1207
PluTI GGCGCC 2 cut(s) 58, 357
PpsI GAGTC 3 cut(s) 289, 1116, 1207
Psp6I CCWGG 5 cut(s) 138, 423, 429, 509, 911
PspFI CCCAGC 2 cut(s) 1151, 1255
PspGI CCWGG 5 cut(s) 138, 423, 429, 509, 911
PspN4I GGNNCC 9 cut(s) 47, 56, 121, 355, 499, 577, 757, 988, 1022
PspPI GGNCC 4 cut(s) 142, 427, 755, 1021
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 1 cut(s) 430
PsuI RGATCY 2 cut(s) 1241, 1331
PteI GCGCGC 1 cut(s) 546
RsaI GTAC 1 cut(s) 1010
RsaNI GTAC 1 cut(s) 1009
RseI CAYNNNNRTG 1 cut(s) 233
SacII CCGCGG 2 cut(s) 409, 817
SaqAI TTAA 2 cut(s) 653, 1390
Sau3AI GATC 8 cut(s) 306, 561, 583, 592, 895, 924, 1241, 1331
Sau96I GGNCC 4 cut(s) 142, 427, 755, 1021
SchI GAGTC 3 cut(s) 290, 1117, 1208
ScrFI CCNGG 8 cut(s) 140, 425, 431, 511, 608, 893, 913, 1003
SduI GDGCHC 2 cut(s) 777, 1293
SfaNI GCATC 3 cut(s) 237, 945, 1357
SfcI CTRYAG 1 cut(s) 675
SfiI GGCCNNNNNGGCC 1 cut(s) 525
SfoI GGCGCC 2 cut(s) 56, 355
Sfr303I CCGCGG 2 cut(s) 409, 817
SfuI TTCGAA 1 cut(s) 468
SgrBI CCGCGG 2 cut(s) 409, 817
SmiMI CAYNNNNRTG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 71, 1292
SmoI CTYRAG 2 cut(s) 71, 1292
Sse9I AATT 7 cut(s) 749, 822, 843, 872, 1087, 1119, 1160
SspDI GGCGCC 2 cut(s) 54, 353
SspMI CTAG 4 cut(s) 164, 998, 1245, 1377
StyD4I CCNGG 8 cut(s) 138, 423, 429, 509, 606, 891, 911, 1001
StyI CCWWGG 3 cut(s) 41, 982, 1176
TaaI ACNGT 1 cut(s) 919
TaqI TCGA 3 cut(s) 468, 522, 923
TasI AATT 7 cut(s) 749, 822, 843, 872, 1087, 1119, 1160
TauI GCSGC 6 cut(s) 266, 314, 317, 411, 485, 625
TfiI GAWTC 5 cut(s) 465, 1014, 1126, 1352, 1384
Tru1I TTAA 2 cut(s) 653, 1390
Tru9I TTAA 2 cut(s) 653, 1390
TscAI CASTG 1 cut(s) 934
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 4 cut(s) 332, 550, 677, 1223
Tsp45I GTSAC 1 cut(s) 12
TspDTI ATGAA 6 cut(s) 266, 376, 956, 1080, 1199, 1221
TspRI CASTG 1 cut(s) 934
Van91I CCANNNNNTGG 1 cut(s) 430
XapI RAATTY 2 cut(s) 749, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XspI CTAG 4 cut(s) 164, 998, 1245, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.