Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007636

Physical Location & Seq

Genomic Coordinates Reverse (-)

16404319 .. 16408202

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1187700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATCAGAGGATCTCAACAGATGTAGTGAACCATAGAAATGGTGACTATGCTCCCATCCGTGATCAAGAGGACCCGAAATTGGGAATGTTTGACAAACGCCTTCCTTGCTTTGGCTGTGGAATTGGATGGTTTTCCCTTCTGCTTGGATTTGTATTTCCAGTGATGTGGTACTATGCTGCATTTCTTTACTTGGCGAAGCATTATCAGAAAGACCCAAGGGAACGAATTGGACTTGAAGCATCGGCAGTAGCAGCTTTGATATGTACAGTTGCGGTGCTAATAACGATTGGTGTCTTTGTTATCAAGGCTTTGTTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.14

Weight (kDa)

7.74

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217
fragaria_vesca	FvH4_6g34190
malus_domestica	MD09G1187700.v1.1 MD17G1172200.v1.1
prunus_persica	Prupe.3G044700_v2.0.a1 Prupe.3G044700_v2.0.a1
pyrus_communis	pycom09g10400 pycom17g16970
rosa_chinensis	RchiOBHm_Chr2g0144541
rosa_laevigata	RLG00000020087
rosa_multiflora	Rmu_sc0005789.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101220
rosa_rugosa	Rorug02G0387600 Rorug02G0387700
rosa_samantha	Rh2AG439700 Rh2CG426700
rosa_wichuraiana	Rw2G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	2 cut(s)	12, 20
AfaI	GTAC	2 cut(s)	173, 268
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 113
AgsI	TTSAA	1 cut(s)	239
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AlwI	GGATC	2 cut(s)	12, 20
ApeKI	GCWGC	2 cut(s)	179, 254
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	166, 266
BccI	CCATC	2 cut(s)	65, 123
BclI	TGATCA	1 cut(s)	64
BfaI	CTAG	1 cut(s)	322
BisI	GCNGC	2 cut(s)	180, 255
BlsI	GCNGC	2 cut(s)	181, 256
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmsI	GCATC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 113
Bse1I	ACTGG	1 cut(s)	161
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	2 cut(s)	57, 134
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 113
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	2 cut(s)	166, 266
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 113
Bsp1407I	TGTACA	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	4, 12, 64
BspACI	CCGC	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	12, 20
BsrGI	TGTACA	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	4, 12, 64
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	271
BstAUI	TGTACA	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	57, 134
BstKTI	GATC	3 cut(s)	7, 15, 67
BstMBI	GATC	3 cut(s)	4, 12, 64
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 254
BstV1I	GCAGC	2 cut(s)	166, 266
BstX2I	RGATCY	1 cut(s)	12
BstXI	CCANNNNNNTGG	2 cut(s)	41, 168
BstYI	RGATCY	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	57, 134
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	172, 267
CviJI	RGCY	3 cut(s)	117, 257, 311
CviKI_1	RGCY	3 cut(s)	117, 257, 311
CviQI	GTAC	2 cut(s)	172, 267
DpnI	GATC	3 cut(s)	6, 14, 66
DpnII	GATC	3 cut(s)	4, 12, 64
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaiI	YATR	4 cut(s)	36, 51, 177, 265
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	180, 255
FokI	GGATG	2 cut(s)	44, 141
Fsp4HI	GCNGC	2 cut(s)	180, 255
FspBI	CTAG	1 cut(s)	322
GluI	GCNGC	2 cut(s)	180, 255
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	9, 210
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	113, 149
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 254
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	4, 12, 64
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	1 cut(s)	174
Lsp1109I	GCAGC	2 cut(s)	166, 266
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	6, 14, 66
MboI	GATC	3 cut(s)	4, 12, 64
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	3 cut(s)	80, 123, 228
MnlI	CCTC	2 cut(s)	3, 64
MslI	CAYNNNNRTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	108, 254
NdeII	GATC	3 cut(s)	4, 12, 64
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	181, 256
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	2 cut(s)	173, 268
RsaNI	GTAC	2 cut(s)	172, 267
RseI	CAYNNNNRTG	1 cut(s)	39
SatI	GCNGC	2 cut(s)	180, 255
Sau3AI	GATC	3 cut(s)	4, 12, 64
Sau96I	GGNCC	1 cut(s)	73
SetI	ASST	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	251
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	80, 123, 228
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	271
TasI	AATT	3 cut(s)	80, 123, 228
TatI	WGTACW	1 cut(s)	266
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	179, 254
Tsp45I	GTSAC	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	73
XspI	CTAG	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.