Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0007636

Physical Location & Seq

Genomic Coordinates Reverse (-)

17730708 .. 17731504

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1172200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCGCCTTTGTTTTTTCAGTCTTCTGCTTGGATTTGTATTTCCAGTGATGTGGTACTACGCCACATTTCTTTACTTTGTGAAGTATTATCAAAAAGATCCAAGGGAACGAACTGGACTTGAAGCGTCAGCAGTAGCAGCTTTGATTTGTACAGTTGCTGTGTTAATAATGCTTGCTGTCTTTGTTATCAAGGCTTTGCTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.83

Weight (kDa)

9.1

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217 AT1G54217
fragaria_vesca	FvH4_6g34190
malus_domestica	MD09G1187700.v1.1 MD17G1172200.v1.1
prunus_persica	Prupe.3G044700_v2.0.a1 Prupe.3G044700_v2.0.a1
pyrus_communis	pycom09g10400 pycom17g16970
rosa_chinensis	RchiOBHm_Chr2g0144541
rosa_laevigata	RLG00000020087
rosa_multiflora	Rmu_sc0005789.1_g000004
rosa_roxburghii	Rroxscaffold_2G00101220
rosa_rugosa	Rorug02G0387600 Rorug02G0387700
rosa_samantha	Rh2AG439700 Rh2CG426700
rosa_wichuraiana	Rw2G035970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	56, 151
AgsI	TTSAA	1 cut(s)	122
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	44, 118
BseDI	CCNNGG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	44, 118
BseXI	GCAGC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	44, 118
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	154
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	1 cut(s)	158
CfoI	GCGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	55, 150
CviJI	RGCY	2 cut(s)	140, 194
CviKI_1	RGCY	2 cut(s)	140, 194
CviQI	GTAC	2 cut(s)	55, 150
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	97
LpnPI	CCDG	2 cut(s)	57, 99
Lsp1109I	GCAGC	1 cut(s)	149
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	14
MflI	RGATCY	1 cut(s)	97
MseI	TTAA	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	56, 151
RsaNI	GTAC	2 cut(s)	55, 150
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	97
SetI	ASST	1 cut(s)	142
SgeI	CNNG	7 cut(s)	41, 56, 114, 126, 131, 185, 202
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	137
TspRI	CASTG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.