AT1G54290

factor SUI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008958
Physical Location & Seq
Reverse (-)
20268474 .. 20270140
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54290.1

Sequence Viewer

Length: 342 bp
ATGTCTGATCTTGAAGTTCAAGTCCCCACTGCCTTTGATCCGTTCGCTGATGCAAATGCTGAGGACTCTGGGGCGGGAACAAAGGAATACGTGCACATTCGTGTTCAGCAGCGTAATGGTAGAAAAAGCTTGACAACTGTCCAGGGGCTTAAGAAAGAGTATAGCTATAGCAAGATACTTAAAGACCTTAAGAAAGAATTCTGCTGCAATGGCACCGTCGTCCAGGACTCTGAATTAGGACAGGTTATTCAGCTTCAAGGTGATCAGAGGAAGAACGTATCTACGTTCCTTGTTCAGGCTGGGCTTGTGAAGAAGGATAACATAAAAATCCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

8.55

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 2.9e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 32
AcsI RAATTY 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 2 cut(s) 149, 188
AgsI TTSAA 3 cut(s) 14, 20, 257
AjnI CCWGG 2 cut(s) 141, 222
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 3 cut(s) 129, 165, 253
AluI AGCT 3 cut(s) 129, 165, 253
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 32
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 109, 204
ApoI RAATTY 1 cut(s) 197
Asp700I GAANNNNTTC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 121, 191
BciT130I CCWGG 2 cut(s) 143, 224
BclI TGATCA 1 cut(s) 262
BfmI CTRYAG 1 cut(s) 166
BfrI CTTAAG 2 cut(s) 149, 188
BisI GCNGC 2 cut(s) 110, 205
BlsI GCNGC 2 cut(s) 111, 206
Bme1390I CCNGG 2 cut(s) 143, 224
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 143, 224
BmsI GCATC 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 142, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 143, 224
BseDI CCNNGG 2 cut(s) 142, 331
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 121, 191
BseYI CCCAGC 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 96
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 7, 37, 262
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 212
BspTI CTTAAG 2 cut(s) 149, 188
BsrDI GCAATG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 142, 331
BssMI GATC 3 cut(s) 7, 37, 262
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 143, 224
Bst4CI ACNGT 2 cut(s) 139, 217
BstAFI CTTAAG 2 cut(s) 149, 188
BstBAI YACGTR 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 60
BstDSI CCRYGG 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 293
BstKTI GATC 3 cut(s) 10, 40, 265
BstMBI GATC 3 cut(s) 7, 37, 262
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 2 cut(s) 143, 224
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 141, 222
BstSFI CTRYAG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 121, 191
BtgI CCRYGG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 1 cut(s) 332
CviJI RGCY 6 cut(s) 129, 148, 165, 253, 299, 304
CviKI_1 RGCY 6 cut(s) 129, 148, 165, 253, 299, 304
DdeI CTNAG 1 cut(s) 60
DpnI GATC 3 cut(s) 9, 39, 264
DpnII GATC 3 cut(s) 7, 37, 262
Eco130I CCWWGG 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 141, 222
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 1 cut(s) 335
FaiI YATR 4 cut(s) 162, 168, 323, 333
FaqI GGGAC 1 cut(s) 8
FatI CATG 1 cut(s) 331
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 110, 205
Fsp4HI GCNGC 2 cut(s) 110, 205
GluI GCNGC 2 cut(s) 110, 205
GsaI CCCAGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 2 cut(s) 65, 227
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 7, 232, 267
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 139, 217
HpyCH4IV ACGT 3 cut(s) 90, 276, 284
HpyCH4V TGCA 3 cut(s) 53, 94, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 3 cut(s) 90, 276, 284
Hsp92II CATG 1 cut(s) 335
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 7, 37, 262
LpnPI CCDG 8 cut(s) 54, 128, 155, 209, 227, 236, 281, 285
Lsp1109I GCAGC 2 cut(s) 121, 191
LweI GCATC 1 cut(s) 40
MaeII ACGT 3 cut(s) 90, 276, 284
MalI GATC 3 cut(s) 9, 39, 264
MboI GATC 3 cut(s) 7, 37, 262
MboII GAAGA 2 cut(s) 283, 322
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 2 cut(s) 197, 233
MlyI GAGTC 2 cut(s) 59, 221
MnlI CCTC 2 cut(s) 55, 261
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 3 cut(s) 150, 180, 189
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 2 cut(s) 149, 188
MspR9I CCNGG 2 cut(s) 143, 224
MvaI CCWGG 2 cut(s) 143, 224
MwoI GCNNNNNNNGC 1 cut(s) 210
NcoI CCATGG 1 cut(s) 331
NdeII GATC 3 cut(s) 7, 37, 262
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 2 cut(s) 111, 206
PleI GAGTC 2 cut(s) 59, 221
PpsI GAGTC 2 cut(s) 59, 221
Ppu21I YACGTR 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 141, 222
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 141, 222
PspN4I GGNNCC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 3 cut(s) 150, 180, 189
SatI GCNGC 2 cut(s) 110, 205
Sau3AI GATC 3 cut(s) 7, 37, 262
SchI GAGTC 2 cut(s) 59, 221
ScrFI CCNGG 2 cut(s) 143, 224
SduI GDGCHC 1 cut(s) 96
SetI ASST 9 cut(s) 93, 131, 167, 189, 246, 255, 262, 279, 287
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 149, 188
SmoI CTYRAG 2 cut(s) 149, 188
Sse9I AATT 2 cut(s) 197, 233
SsiI CCGC 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 141, 222
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 139, 217
TaiI ACGT 3 cut(s) 93, 279, 287
TasI AATT 2 cut(s) 197, 233
Tru1I TTAA 3 cut(s) 150, 180, 189
Tru9I TTAA 3 cut(s) 150, 180, 189
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 109, 204
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 149, 188
VneI GTGCAC 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.