FvH4_6g43460

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008958
Physical Location & Seq
Reverse (-)
33629132 .. 33631578
2447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43460.t1

Sequence Viewer

Length: 342 bp
ATGTCTGAACTCGAAACCCAGGTCCCATCTACTTTTGATCCCTTTGCTGACGCCAATGCTGAGGACTCAGGTGCCGGGACAAAAGAATACGTGCACGTTCGTGTACAGCAGCGTAACGGGAGGAAGAGCCTGACCACGGTGCAAGGATTGAAGAAGGAATACAGCTACAACAAGATTCTTAAGGACCTCAAGAAGGAGTTCTGCTGTAATGGTACTGTTGTTCAGGATCCTGAGTTAGGCCAGGTAATACAACTCCAGGGGGACCAAAGAAAGAATGTTTCCTCCTTCCTTGTGCAGGCCGGCATTGTTAAGAAGGAGAATATCAAGCTTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

114

Amino Acids

12.65

Weight (kDa)

8.55

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 1.2e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AclWI GGATC 3 cut(s) 32, 221, 234
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 105, 214
AfiI CCNNNNNNNGG 4 cut(s) 136, 193, 236, 295
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 3 cut(s) 18, 240, 255
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 2 cut(s) 165, 328
AluI AGCT 2 cut(s) 165, 328
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 3 cut(s) 32, 221, 234
AoxI GGCC 2 cut(s) 238, 297
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 109
ArsI GACNNNNNNTTYG 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 22, 184, 262
AsuC2I CCSGG 1 cut(s) 76
AvaII GGWCC 3 cut(s) 22, 184, 262
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 3 cut(s) 20, 242, 257
BcnI CCSGG 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 4 cut(s) 20, 76, 242, 257
Bme18I GGWCC 3 cut(s) 22, 184, 262
BmgT120I GGNCC 3 cut(s) 22, 184, 262
BmiI GGNNCC 4 cut(s) 24, 73, 228, 263
BmrFI CCNGG 4 cut(s) 20, 76, 242, 257
BpmI CTGGAG 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 18, 135, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 193, 236, 295
Bse118I RCCGGY 1 cut(s) 299
BseBI CCWGG 3 cut(s) 20, 242, 257
BseDI CCNNGG 3 cut(s) 18, 135, 256
BseLI CCNNNNNNNGG 4 cut(s) 136, 193, 236, 295
BseMII CTCAG 3 cut(s) 51, 81, 222
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 2 cut(s) 240, 299
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 75, 300
BslFI GGGAC 3 cut(s) 8, 91, 275
BslI CCNNNNNNNGG 4 cut(s) 136, 193, 236, 295
BsmFI GGGAC 3 cut(s) 8, 91, 275
BsnI GGCC 2 cut(s) 240, 299
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 37, 226
BspANI GGCC 2 cut(s) 240, 299
BspCNI CTCAG 3 cut(s) 52, 80, 223
BspLI GGNNCC 4 cut(s) 24, 73, 228, 263
BspPI GGATC 3 cut(s) 32, 221, 234
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 18, 135, 256
BssMI GATC 2 cut(s) 37, 226
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 20, 242, 257
Bst4CI ACNGT 3 cut(s) 139, 217, 335
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 297, 301
BstDEI CTNAG 3 cut(s) 60, 67, 231
BstDSI CCRYGG 1 cut(s) 135
BstENI CCTNNNNNAGG 3 cut(s) 191, 234, 293
BstKTI GATC 2 cut(s) 40, 229
BstMBI GATC 2 cut(s) 37, 226
BstNI CCWGG 3 cut(s) 20, 242, 257
BstSCI CCNGG 4 cut(s) 18, 74, 240, 255
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 2 cut(s) 240, 299
BtgI CCRYGG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 297, 301
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 22, 184, 262
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 104, 213
CviJI RGCY 5 cut(s) 129, 165, 240, 299, 328
CviKI_1 RGCY 5 cut(s) 129, 165, 240, 299, 328
CviQI GTAC 2 cut(s) 104, 213
DdeI CTNAG 3 cut(s) 60, 67, 231
DpnI GATC 2 cut(s) 39, 228
DpnII GATC 2 cut(s) 37, 226
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 22, 184, 262
EcoNI CCTNNNNNAGG 3 cut(s) 191, 234, 293
EcoO109I RGGNCCY 2 cut(s) 22, 184
EcoRII CCWGG 3 cut(s) 18, 240, 255
FaqI GGGAC 3 cut(s) 8, 91, 275
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 2 cut(s) 240, 299
HapII CCGG 2 cut(s) 75, 300
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 2 cut(s) 65, 175
HpaII CCGG 2 cut(s) 75, 300
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 2 cut(s) 7, 341
Hpy188III TCNNGA 3 cut(s) 190, 224, 230
Hpy8I GTNNAC 2 cut(s) 94, 104
HpyAV CCTTC 4 cut(s) 148, 187, 295, 307
HpyCH4III ACNGT 3 cut(s) 139, 217, 335
HpyCH4IV ACGT 2 cut(s) 90, 96
HpyCH4V TGCA 3 cut(s) 94, 142, 295
HpyF3I CTNAG 3 cut(s) 60, 67, 231
HpySE526I ACGT 2 cut(s) 90, 96
Hsp92I GRCGYC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 37, 226
LguI GCTCTTC 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 121
MaeII ACGT 2 cut(s) 90, 96
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 39, 228
MboI GATC 2 cut(s) 37, 226
MboII GAAGA 2 cut(s) 136, 163
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 55, 114, 197, 292
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 2 cut(s) 180, 309
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 2 cut(s) 75, 300
MspR9I CCNGG 4 cut(s) 20, 76, 242, 257
MvaI CCWGG 3 cut(s) 20, 242, 257
NaeI GCCGGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 76
NdeII GATC 2 cut(s) 37, 226
NgoMIV GCCGGC 1 cut(s) 299
NlaIV GGNNCC 4 cut(s) 24, 73, 228, 263
OliI CACNNNNGTG 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 91
PpuMI RGGWCCY 2 cut(s) 22, 184
Psp5II RGGWCCY 2 cut(s) 22, 184
Psp6I CCWGG 3 cut(s) 18, 240, 255
PspGI CCWGG 3 cut(s) 18, 240, 255
PspN4I GGNNCC 4 cut(s) 24, 73, 228, 263
PspPI GGNCC 3 cut(s) 22, 184, 262
PspPPI RGGWCCY 2 cut(s) 22, 184
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 105, 214
RsaNI GTAC 2 cut(s) 104, 213
RseI CAYNNNNRTG 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 2 cut(s) 180, 309
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 37, 226
Sau96I GGNCC 3 cut(s) 22, 184, 262
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 4 cut(s) 20, 76, 242, 257
SduI GDGCHC 1 cut(s) 96
SetI ASST 8 cut(s) 24, 73, 93, 99, 167, 189, 246, 330
SinI GGWCC 3 cut(s) 22, 184, 262
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 179, 188
SmoI CTYRAG 2 cut(s) 179, 188
StyD4I CCNGG 4 cut(s) 18, 74, 240, 255
TaaI ACNGT 3 cut(s) 139, 217, 335
TaiI ACGT 2 cut(s) 93, 99
TaqI TCGA 1 cut(s) 12
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 180, 309
Tru9I TTAA 2 cut(s) 180, 309
TseI GCWGC 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 3 cut(s) 22, 184, 262
XagI CCTNNNNNAGG 3 cut(s) 191, 234, 293
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.