Rroxscaffold_2G00090160

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008958
Physical Location & Seq
Forward (+)
11955388 .. 11957791
2404 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00090160.1

Sequence Viewer

Length: 396 bp
ATGTCTGAACTCGAAACCCAGGTCCCATCTACTTTTGATCCCTTTGCTGACGCCAATGCTGAGGACTCAGGTGCCGGGACAAAAGAATACGTGCACGTGCGTGTACAGCAGCGTAACGGGAGGAAGAGCCTGACTACTGTGCAAGGATTGAAGAAGGAATACAGCTACAACAAGATACTTAAGGACCTCAAGAAGGAGTTCTGTTGTAATGGTACTGTTGTCCAGGATCCTGAGTTAGGCCAGAGCATATGTGGAGAACCTGGTAGCATAGCATTAGTGGATGTAAGAATGGGACAGGTTATACAACTTCAAGGGGACCAAAGAAAGAATGTTTCCTCCTTCCTTGTGCAGGCTGGCATTGTTAAGAAGGAGAATATTAAGCTTCACGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

131

Amino Acids

14.46

Weight (kDa)

7.69

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 120 2.4e-23 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AclWI GGATC 3 cut(s) 32, 221, 234
AcvI CACGTG 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 105, 214
AfiI CCNNNNNNNGG 3 cut(s) 193, 236, 349
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 151, 311
AjnI CCWGG 3 cut(s) 18, 222, 259
AleI CACNNNNGTG 1 cut(s) 99
AluBI AGCT 2 cut(s) 165, 382
AluI AGCT 2 cut(s) 165, 382
Alw21I GWGCWC 1 cut(s) 96
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 3 cut(s) 32, 221, 234
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 109
ArsI GACNNNNNNTTYG 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 22, 184, 316
AsuC2I CCSGG 1 cut(s) 76
AvaII GGWCC 3 cut(s) 22, 184, 316
BaeGI GKGCMC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 71
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbrPI CACGTG 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 96
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 3 cut(s) 20, 224, 261
BcnI CCSGG 1 cut(s) 76
BfrI CTTAAG 1 cut(s) 179
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 4 cut(s) 20, 76, 224, 261
Bme18I GGWCC 3 cut(s) 22, 184, 316
BmgT120I GGNCC 3 cut(s) 22, 184, 316
BmiI GGNNCC 4 cut(s) 24, 73, 228, 317
BmrFI CCNGG 4 cut(s) 20, 76, 224, 261
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 76
BsaAI YACGTR 2 cut(s) 91, 97
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 236, 349
BseBI CCWGG 3 cut(s) 20, 224, 261
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 3 cut(s) 193, 236, 349
BseMII CTCAG 3 cut(s) 51, 81, 222
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 368
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 4 cut(s) 8, 91, 306, 329
BslI CCNNNNNNNGG 3 cut(s) 193, 236, 349
BsmFI GGGAC 4 cut(s) 8, 91, 306, 329
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 37, 226
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 52, 80, 223
BspLI GGNNCC 4 cut(s) 24, 73, 228, 317
BspPI GGATC 3 cut(s) 32, 221, 234
BspQI GCTCTTC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 179
BsrGI TGTACA 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 37, 226
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 3 cut(s) 20, 224, 261
Bst4CI ACNGT 3 cut(s) 139, 217, 389
Bst6I CTCTTC 1 cut(s) 119
BstACI GRCGYC 1 cut(s) 51
BstAFI CTTAAG 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 103
BstBAI YACGTR 2 cut(s) 91, 97
BstC8I GCNNGC 2 cut(s) 351, 355
BstDEI CTNAG 3 cut(s) 60, 67, 231
BstENI CCTNNNNNAGG 3 cut(s) 191, 234, 347
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 40, 229
BstMBI GATC 2 cut(s) 37, 226
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNI CCWGG 3 cut(s) 20, 224, 261
BstSCI CCNGG 4 cut(s) 18, 74, 222, 259
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 351, 355
Cfr13I GGNCC 3 cut(s) 22, 184, 316
CseI GACGC 1 cut(s) 59
CsiI ACCWGGT 1 cut(s) 259
Csp6I GTAC 2 cut(s) 104, 213
CviJI RGCY 5 cut(s) 129, 165, 240, 353, 382
CviKI_1 RGCY 5 cut(s) 129, 165, 240, 353, 382
CviQI GTAC 2 cut(s) 104, 213
DdeI CTNAG 3 cut(s) 60, 67, 231
DpnI GATC 2 cut(s) 39, 228
DpnII GATC 2 cut(s) 37, 226
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 22, 184, 316
Eco72I CACGTG 1 cut(s) 97
EcoNI CCTNNNNNAGG 3 cut(s) 191, 234, 347
EcoO109I RGGNCCY 2 cut(s) 22, 184
EcoRII CCWGG 3 cut(s) 18, 222, 259
FaiI YATR 4 cut(s) 248, 250, 269, 302
FaqI GGGAC 4 cut(s) 8, 91, 306, 329
FauNDI CATATG 1 cut(s) 248
Fnu4HI GCNGC 1 cut(s) 110
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 1 cut(s) 110
GluI GCNGC 1 cut(s) 110
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 75
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 94, 104
Hpy188I TCNGA 2 cut(s) 7, 395
Hpy188III TCNNGA 2 cut(s) 190, 230
Hpy8I GTNNAC 2 cut(s) 94, 104
HpyAV CCTTC 4 cut(s) 148, 187, 349, 361
HpyCH4III ACNGT 3 cut(s) 139, 217, 389
HpyCH4IV ACGT 2 cut(s) 90, 96
HpyCH4V TGCA 3 cut(s) 94, 142, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 3 cut(s) 60, 67, 231
HpySE526I ACGT 2 cut(s) 90, 96
Hsp92I GRCGYC 1 cut(s) 51
Kzo9I GATC 2 cut(s) 37, 226
LguI GCTCTTC 1 cut(s) 119
Lsp1109I GCAGC 1 cut(s) 121
MabI ACCWGGT 1 cut(s) 259
MaeII ACGT 2 cut(s) 90, 96
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 39, 228
MboI GATC 2 cut(s) 37, 226
MboII GAAGA 2 cut(s) 136, 163
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 55, 114, 197, 346
MroXI GAANNNNTTC 1 cut(s) 197
MseI TTAA 3 cut(s) 180, 363, 378
MslI CAYNNNNRTG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 4 cut(s) 20, 76, 224, 261
MvaI CCWGG 3 cut(s) 20, 224, 261
MwoI GCNNNNNNNGC 1 cut(s) 106
NciI CCSGG 1 cut(s) 76
NdeI CATATG 1 cut(s) 248
NdeII GATC 2 cut(s) 37, 226
NlaIV GGNNCC 4 cut(s) 24, 73, 228, 317
OliI CACNNNNGTG 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 197
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 1 cut(s) 111
PleI GAGTC 1 cut(s) 59
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 2 cut(s) 91, 97
PpuMI RGGWCCY 2 cut(s) 22, 184
Psp5II RGGWCCY 2 cut(s) 22, 184
Psp6I CCWGG 3 cut(s) 18, 222, 259
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 3 cut(s) 18, 222, 259
PspN4I GGNNCC 4 cut(s) 24, 73, 228, 317
PspPI GGNCC 3 cut(s) 22, 184, 316
PspPPI RGGWCCY 2 cut(s) 22, 184
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 105, 214
RsaNI GTAC 2 cut(s) 104, 213
RseI CAYNNNNRTG 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 119
SaqAI TTAA 3 cut(s) 180, 363, 378
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 2 cut(s) 37, 226
Sau96I GGNCC 3 cut(s) 22, 184, 316
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 4 cut(s) 20, 76, 224, 261
SduI GDGCHC 1 cut(s) 96
SetI ASST 9 cut(s) 24, 73, 93, 99, 167, 189, 262, 300, 384
SexAI ACCWGGT 1 cut(s) 259
SinI GGWCC 3 cut(s) 22, 184, 316
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 179, 188
SmoI CTYRAG 2 cut(s) 179, 188
SspI AATATT 1 cut(s) 376
StyD4I CCNGG 4 cut(s) 18, 74, 222, 259
TaaI ACNGT 3 cut(s) 139, 217, 389
TaiI ACGT 2 cut(s) 93, 99
TaqI TCGA 1 cut(s) 12
TatI WGTACW 1 cut(s) 103
Tru1I TTAA 3 cut(s) 180, 363, 378
Tru9I TTAA 3 cut(s) 180, 363, 378
TseI GCWGC 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 3 cut(s) 22, 184, 316
XagI CCTNNNNNAGG 3 cut(s) 191, 234, 347
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.