AT4G27130

factor SUI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0008958
Physical Location & Seq
Reverse (-)
13604466 .. 13606468
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27130.1

Sequence Viewer

Length: 342 bp
ATGTCTGAACTTGATTCCCAGGTCCCTACTGCCTTCGACCCGTTTGCTGATGCGAATGCTGAGGACTCAGGTGCAGGAACAAAGGAGTACGTTCATATTCGTGTCCAGCAGCGGAATGGTAGGAAAAGCTTGACAACGGTCCAGGGGCTGAAGAAAGAGTACAGCTACACCAAGATACTTAAGGACCTCAAGAAAGAATTTTGCTGCAACGGAACTGTGGTTCAAGACTCAGAACTCGGACAGGTTATTCAGCTTCAAGGCGATCAGAGGAAGAACGTCTCCACGTTCCTAGTCCAGGCTGGGCTTGTGAAGAAAGATAACATCAAGATCCATGGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

8.55

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 28 - 102 4.1e-26 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 112
AclWI GGATC 1 cut(s) 322
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 2 cut(s) 89, 161
AfiI CCNNNNNNNGG 1 cut(s) 295
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 2 cut(s) 224, 257
AjnI CCWGG 3 cut(s) 18, 141, 294
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 3 cut(s) 129, 165, 253
AluI AGCT 3 cut(s) 129, 165, 253
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 109, 204
ApoI RAATTY 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 22, 139, 184
AvaII GGWCC 3 cut(s) 22, 139, 184
BarI GAAGNNNNNNTAC 2 cut(s) 143, 175
BbvCI CCTCAGC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 121, 191
BcgI CGANNNNNNTGC 2 cut(s) 26, 60
BciT130I CCWGG 3 cut(s) 20, 143, 296
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 110, 205
BlsI GCNGC 2 cut(s) 111, 206
Bme1390I CCNGG 3 cut(s) 20, 143, 296
Bme18I GGWCC 3 cut(s) 22, 139, 184
BmgT120I GGNCC 3 cut(s) 22, 139, 184
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 3 cut(s) 20, 143, 296
BmsI GCATC 1 cut(s) 40
BoxI GACNNNNGTC 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 173
BsaJI CCNNGG 3 cut(s) 18, 142, 331
Bsc4I CCNNNNNNNGG 1 cut(s) 295
BseBI CCWGG 3 cut(s) 20, 143, 296
BseDI CCNNGG 3 cut(s) 18, 142, 331
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 3 cut(s) 51, 81, 243
BseXI GCAGC 2 cut(s) 121, 191
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 283
BsmBI CGTCTC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 262, 327
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 1 cut(s) 112
BspCNI CTCAG 3 cut(s) 52, 80, 242
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 322
BspTI CTTAAG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 18, 142, 331
BssMI GATC 2 cut(s) 262, 327
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 20, 143, 296
Bst4CI ACNGT 2 cut(s) 139, 217
BstAFI CTTAAG 1 cut(s) 179
BstDEI CTNAG 3 cut(s) 60, 67, 229
BstDSI CCRYGG 1 cut(s) 331
BstENI CCTNNNNNAGG 1 cut(s) 293
BstKTI GATC 2 cut(s) 265, 330
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 2 cut(s) 262, 327
BstNI CCWGG 3 cut(s) 20, 143, 296
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 18, 141, 294
BstV1I GCAGC 2 cut(s) 121, 191
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 22, 139, 184
Csp6I GTAC 2 cut(s) 88, 160
CviAII CATG 1 cut(s) 332
CviJI RGCY 6 cut(s) 129, 148, 165, 253, 299, 304
CviKI_1 RGCY 6 cut(s) 129, 148, 165, 253, 299, 304
CviQI GTAC 2 cut(s) 88, 160
DdeI CTNAG 3 cut(s) 60, 67, 229
DpnI GATC 2 cut(s) 264, 329
DpnII GATC 2 cut(s) 262, 327
Eco130I CCWWGG 1 cut(s) 331
Eco47I GGWCC 3 cut(s) 22, 139, 184
Eco57I CTGAAG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 2 cut(s) 22, 184
EcoRII CCWGG 3 cut(s) 18, 141, 294
EcoT14I CCWWGG 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 1 cut(s) 335
FaiI YATR 2 cut(s) 96, 333
FaqI GGGAC 1 cut(s) 8
FatI CATG 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 110, 205
Fsp4HI GCNGC 2 cut(s) 110, 205
FspBI CTAG 1 cut(s) 290
GluI GCNGC 2 cut(s) 110, 205
GsaI CCCAGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 3 cut(s) 14, 65, 227
Hpy188I TCNGA 5 cut(s) 7, 232, 239, 267, 341
Hpy188III TCNNGA 3 cut(s) 190, 224, 325
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 139, 217
HpyCH4IV ACGT 3 cut(s) 90, 276, 284
HpyCH4V TGCA 2 cut(s) 74, 207
HpyF3I CTNAG 3 cut(s) 60, 67, 229
HpySE526I ACGT 3 cut(s) 90, 276, 284
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 2 cut(s) 262, 327
Lsp1109I GCAGC 2 cut(s) 121, 191
LweI GCATC 1 cut(s) 40
MaeI CTAG 1 cut(s) 290
MaeII ACGT 3 cut(s) 90, 276, 284
MalI GATC 2 cut(s) 264, 329
MboI GATC 2 cut(s) 262, 327
MboII GAAGA 3 cut(s) 163, 283, 322
MflI RGATCY 1 cut(s) 327
MluCI AATT 1 cut(s) 197
MlyI GAGTC 2 cut(s) 59, 221
MnlI CCTC 3 cut(s) 55, 197, 261
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 112
MspCI CTTAAG 1 cut(s) 179
MspR9I CCNGG 3 cut(s) 20, 143, 296
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 3 cut(s) 20, 143, 296
NcoI CCATGG 1 cut(s) 331
NdeII GATC 2 cut(s) 262, 327
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 24
PctI GAATGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 2 cut(s) 111, 206
PleI GAGTC 2 cut(s) 59, 221
PpsI GAGTC 2 cut(s) 59, 221
PpuMI RGGWCCY 2 cut(s) 22, 184
PshAI GACNNNNGTC 1 cut(s) 137
Psp5II RGGWCCY 2 cut(s) 22, 184
Psp6I CCWGG 3 cut(s) 18, 141, 294
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 3 cut(s) 18, 141, 294
PspN4I GGNNCC 1 cut(s) 24
PspPI GGNCC 3 cut(s) 22, 139, 184
PspPPI RGGWCCY 2 cut(s) 22, 184
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 327
RsaI GTAC 2 cut(s) 89, 161
RsaNI GTAC 2 cut(s) 88, 160
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 110, 205
Sau3AI GATC 2 cut(s) 262, 327
Sau96I GGNCC 3 cut(s) 22, 139, 184
SchI GAGTC 2 cut(s) 59, 221
ScrFI CCNGG 3 cut(s) 20, 143, 296
SfaNI GCATC 1 cut(s) 40
SinI GGWCC 3 cut(s) 22, 139, 184
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 179, 188
SmoI CTYRAG 2 cut(s) 179, 188
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 112
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 3 cut(s) 18, 141, 294
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 139, 217
TaiI ACGT 3 cut(s) 93, 279, 287
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 197
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 109, 204
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 1 cut(s) 225
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 3 cut(s) 22, 139, 184
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.