Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008958

Physical Location & Seq

Genomic Coordinates Reverse (-)

22044943 .. 22048395

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G219300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGAATTCGACACCCAGGTCCCATCTGCTTTTGATCCCTTTGCTGATGCAAATGCTGAGGACTCAGGTGCTGGGACAAAAGAGTATGTGCATGTGCGTGTGCAGCAGCGTAACGGGAGGAAAAGCCTGACTACTGTGCAAGGATTGAAGAAGGAATACAGCTACAATAAGATACTAAAGGACCTCAAGAAAGAGTTCTGTTGTAATGGTACAGTGGTCGAGGATCCTGAGTTAGGCCAGGTCATACAACTTCAGGGGGACCAGAGAAAGAATGTTTCCTCCTTCCTTGTGCAGGCTGGCATTGTTAAGAAGGAAGACATCAAGCTTCATGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

114

Amino Acids

12.64

Weight (kDa)

6.72

Isoelectric Point (pI)

26.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54290 AT4G27130 AT5G54760 AT5G54760 AT5G54760 AT5G54760
fragaria_vesca	FvH4_6g43460
malus_domestica	MD17G1094100.v1.1
prunus_persica	Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159931
rosa_laevigata	RLG00000021185
rosa_multiflora	Rmu_sc0002508.1_g000035 Rmu_sc0012797.1_g000004 Rmu_sc0029076.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090160
rosa_rugosa	Rorug02G0479200
rosa_samantha	Rh2AG545600
rosa_wichuraiana	Rw2G045140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AclWI	GGATC	3 cut(s)	32, 221, 234
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	214
AfiI	CCNNNNNNNGG	2 cut(s)	236, 295
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	18, 240
AluBI	AGCT	2 cut(s)	165, 328
AluI	AGCT	2 cut(s)	165, 328
AlwI	GGATC	3 cut(s)	32, 221, 234
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	106, 109
ApoI	RAATTY	1 cut(s)	8
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	22, 184, 262
AvaII	GGWCC	3 cut(s)	22, 184, 262
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BamHI	GGATCC	1 cut(s)	226
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbsI	GAAGAC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	118, 121
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	20, 242
BisI	GCNGC	2 cut(s)	107, 110
BlsI	GCNGC	2 cut(s)	108, 111
Bme1390I	CCNGG	2 cut(s)	20, 242
Bme18I	GGWCC	3 cut(s)	22, 184, 262
BmgT120I	GGNCC	3 cut(s)	22, 184, 262
BmiI	GGNNCC	3 cut(s)	24, 228, 263
BmrFI	CCNGG	2 cut(s)	20, 242
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 295
BseBI	CCWGG	2 cut(s)	20, 242
BseDI	CCNNGG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	236, 295
BseMII	CTCAG	3 cut(s)	51, 81, 222
BseXI	GCAGC	2 cut(s)	118, 121
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	2 cut(s)	125, 314
BshFI	GGCC	1 cut(s)	240
BslFI	GGGAC	3 cut(s)	8, 91, 275
BslI	CCNNNNNNNGG	2 cut(s)	236, 295
BsmFI	GGGAC	3 cut(s)	8, 91, 275
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	37, 226
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	3 cut(s)	52, 80, 223
BspLI	GGNNCC	3 cut(s)	24, 228, 263
BspPI	GGATC	3 cut(s)	32, 221, 234
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	2 cut(s)	37, 226
Bst2UI	CCWGG	2 cut(s)	20, 242
Bst4CI	ACNGT	2 cut(s)	139, 217
BstC8I	GCNNGC	2 cut(s)	297, 301
BstDEI	CTNAG	3 cut(s)	60, 67, 231
BstENI	CCTNNNNNAGG	2 cut(s)	234, 293
BstKTI	GATC	2 cut(s)	40, 229
BstMBI	GATC	2 cut(s)	37, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	20, 242
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	18, 240
BstV1I	GCAGC	2 cut(s)	118, 121
BstV2I	GAAGAC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	297, 301
CaiI	CAGNNNCTG	1 cut(s)	74
Cfr13I	GGNCC	3 cut(s)	22, 184, 262
Csp6I	GTAC	1 cut(s)	213
CviAII	CATG	2 cut(s)	95, 332
CviJI	RGCY	5 cut(s)	129, 165, 240, 299, 328
CviKI_1	RGCY	5 cut(s)	129, 165, 240, 299, 328
CviQI	GTAC	1 cut(s)	213
DdeI	CTNAG	3 cut(s)	60, 67, 231
DpnI	GATC	2 cut(s)	39, 228
DpnII	GATC	2 cut(s)	37, 226
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
Eco47I	GGWCC	3 cut(s)	22, 184, 262
Eco57I	CTGAAG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	2 cut(s)	234, 293
EcoO109I	RGGNCCY	2 cut(s)	22, 184
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	18, 240
FaeI	CATG	2 cut(s)	98, 335
FaiI	YATR	4 cut(s)	90, 96, 248, 333
FaqI	GGGAC	3 cut(s)	8, 91, 275
FatI	CATG	2 cut(s)	94, 331
Fnu4HI	GCNGC	2 cut(s)	107, 110
Fsp4HI	GCNGC	2 cut(s)	107, 110
GluI	GCNGC	2 cut(s)	107, 110
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	98, 335
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	2 cut(s)	190, 230
HpyAV	CCTTC	3 cut(s)	148, 295, 307
HpyCH4III	ACNGT	2 cut(s)	139, 217
HpyCH4V	TGCA	5 cut(s)	53, 94, 106, 142, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	60, 67, 231
Hsp92II	CATG	2 cut(s)	98, 335
Kzo9I	GATC	2 cut(s)	37, 226
Lsp1109I	GCAGC	2 cut(s)	118, 121
LweI	GCATC	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	39, 228
MboI	GATC	2 cut(s)	37, 226
MboII	GAAGA	2 cut(s)	163, 329
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	5 cut(s)	55, 114, 197, 217, 292
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	20, 242
MvaI	CCWGG	2 cut(s)	20, 242
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	37, 226
NlaIII	CATG	2 cut(s)	98, 335
NlaIV	GGNNCC	3 cut(s)	24, 228, 263
NspI	RCATGY	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	108, 111
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	2 cut(s)	22, 184
Psp5II	RGGWCCY	2 cut(s)	22, 184
Psp6I	CCWGG	2 cut(s)	18, 240
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	18, 240
PspN4I	GGNNCC	3 cut(s)	24, 228, 263
PspPI	GGNCC	3 cut(s)	22, 184, 262
PspPPI	RGGWCCY	2 cut(s)	22, 184
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	214
RsaNI	GTAC	1 cut(s)	213
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	107, 110
Sau3AI	GATC	2 cut(s)	37, 226
Sau96I	GGNCC	3 cut(s)	22, 184, 262
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	20, 242
SetI	ASST	6 cut(s)	24, 73, 167, 189, 246, 330
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	3 cut(s)	22, 184, 262
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	18, 240
TaaI	ACNGT	2 cut(s)	139, 217
TaqI	TCGA	2 cut(s)	12, 222
TasI	AATT	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	2 cut(s)	106, 109
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	3 cut(s)	22, 184, 262
XagI	CCTNNNNNAGG	2 cut(s)	234, 293
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.