Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029076.1

Orthogroup ID

OG0008958

Physical Location & Seq

Genomic Coordinates Forward (+)

25412 .. 26740

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029076.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgtctgaactcgaaacccaggtcccatctacttttgatccctttgctgacgccaatgctgaggactcaggtgccgggacaaaagaatacgtgcacgtgcgtgtacagcagcgtaacgggaggaaaagcctgactactgtgcaaggattgaagaaggaatacagctacaacaagatacttaaggacctcaagaaggagttctgctgtaatggtactgttgtccaggatactgagttaggccaggttatacaacttcagggggaccaaagaaagaatgtttcctccttccttgtgcaggctggcattgttaagaaggagaatattaagctccacggtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SUI1

Protein Analysis

113

Amino Acids

12.65

Weight (kDa)

8.55

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008958)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54290 AT4G27130 AT5G54760 AT5G54760 AT5G54760 AT5G54760
fragaria_vesca	FvH4_6g43460
malus_domestica	MD17G1094100.v1.1
prunus_persica	Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1 Prupe.3G219300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159931
rosa_laevigata	RLG00000021185
rosa_multiflora	Rmu_sc0002508.1_g000035 Rmu_sc0012797.1_g000004 Rmu_sc0029076.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090160
rosa_rugosa	Rorug02G0479200
rosa_samantha	Rh2AG545600
rosa_wichuraiana	Rw2G045140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	239
AcvI	CACGTG	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	105, 214
AfiI	CCNNNNNNNGG	2 cut(s)	193, 295
AflII	CTTAAG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	3 cut(s)	18, 222, 240
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	165, 328
AluI	AGCT	2 cut(s)	165, 328
Alw21I	GWGCWC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	32
AoxI	GGCC	1 cut(s)	238
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	109
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	22, 184, 262
AsuC2I	CCSGG	1 cut(s)	76
AvaII	GGWCC	3 cut(s)	22, 184, 262
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BanI	GGYRCC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbrPI	CACGTG	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	96
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	3 cut(s)	20, 224, 242
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	76
BfrI	CTTAAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	4 cut(s)	20, 76, 224, 242
Bme18I	GGWCC	3 cut(s)	22, 184, 262
BmgT120I	GGNCC	3 cut(s)	22, 184, 262
BmiI	GGNNCC	3 cut(s)	24, 73, 263
BmrFI	CCNGG	4 cut(s)	20, 76, 224, 242
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	1 cut(s)	76
BsaAI	YACGTR	2 cut(s)	91, 97
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	18, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 295
BseBI	CCWGG	3 cut(s)	20, 224, 242
BseDI	CCNNGG	2 cut(s)	18, 331
BseLI	CCNNNNNNNGG	2 cut(s)	193, 295
BseMII	CTCAG	3 cut(s)	51, 81, 222
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	3 cut(s)	8, 91, 275
BslI	CCNNNNNNNGG	2 cut(s)	193, 295
BsmFI	GGGAC	3 cut(s)	8, 91, 275
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	3 cut(s)	52, 80, 223
BspLI	GGNNCC	3 cut(s)	24, 73, 263
BspPI	GGATC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	103
BssECI	CCNNGG	2 cut(s)	18, 331
BssMI	GATC	1 cut(s)	37
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	20, 224, 242
Bst4CI	ACNGT	3 cut(s)	139, 217, 335
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	179
BstAUI	TGTACA	1 cut(s)	103
BstBAI	YACGTR	2 cut(s)	91, 97
BstC8I	GCNNGC	2 cut(s)	297, 301
BstDEI	CTNAG	3 cut(s)	60, 67, 231
BstDSI	CCRYGG	1 cut(s)	331
BstENI	CCTNNNNNAGG	2 cut(s)	191, 293
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	3 cut(s)	20, 224, 242
BstSCI	CCNGG	4 cut(s)	18, 74, 222, 240
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	121
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	297, 301
Cfr13I	GGNCC	3 cut(s)	22, 184, 262
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	104, 213
CviJI	RGCY	5 cut(s)	129, 165, 240, 299, 328
CviKI_1	RGCY	5 cut(s)	129, 165, 240, 299, 328
CviQI	GTAC	2 cut(s)	104, 213
DdeI	CTNAG	3 cut(s)	60, 67, 231
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	22, 184, 262
Eco57I	CTGAAG	1 cut(s)	239
Eco72I	CACGTG	1 cut(s)	97
EcoNI	CCTNNNNNAGG	2 cut(s)	191, 293
EcoO109I	RGGNCCY	2 cut(s)	22, 184
EcoRII	CCWGG	3 cut(s)	18, 222, 240
FaiI	YATR	1 cut(s)	248
FaqI	GGGAC	3 cut(s)	8, 91, 275
Fnu4HI	GCNGC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	110
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	94, 104
Hpy188I	TCNGA	2 cut(s)	7, 341
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	94, 104
HpyAV	CCTTC	4 cut(s)	148, 187, 295, 307
HpyCH4III	ACNGT	3 cut(s)	139, 217, 335
HpyCH4IV	ACGT	2 cut(s)	90, 96
HpyCH4V	TGCA	3 cut(s)	94, 142, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	3 cut(s)	60, 67, 231
HpySE526I	ACGT	2 cut(s)	90, 96
Hsp92I	GRCGYC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	1 cut(s)	121
MaeII	ACGT	2 cut(s)	90, 96
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	55, 114, 197, 292
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	3 cut(s)	180, 309, 324
MslI	CAYNNNNRTG	1 cut(s)	99
MspCI	CTTAAG	1 cut(s)	179
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	4 cut(s)	20, 76, 224, 242
MvaI	CCWGG	3 cut(s)	20, 224, 242
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	1 cut(s)	37
NlaIV	GGNNCC	3 cut(s)	24, 73, 263
OliI	CACNNNNGTG	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	2 cut(s)	91, 97
PpuMI	RGGWCCY	2 cut(s)	22, 184
Psp5II	RGGWCCY	2 cut(s)	22, 184
Psp6I	CCWGG	3 cut(s)	18, 222, 240
PspCI	CACGTG	1 cut(s)	97
PspGI	CCWGG	3 cut(s)	18, 222, 240
PspN4I	GGNNCC	3 cut(s)	24, 73, 263
PspPI	GGNCC	3 cut(s)	22, 184, 262
PspPPI	RGGWCCY	2 cut(s)	22, 184
RsaI	GTAC	2 cut(s)	105, 214
RsaNI	GTAC	2 cut(s)	104, 213
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	180, 309, 324
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	3 cut(s)	22, 184, 262
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	4 cut(s)	20, 76, 224, 242
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	24, 73, 93, 99, 167, 189, 246, 330
SinI	GGWCC	3 cut(s)	22, 184, 262
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	179, 188
SmoI	CTYRAG	2 cut(s)	179, 188
SspI	AATATT	1 cut(s)	322
StyD4I	CCNGG	4 cut(s)	18, 74, 222, 240
TaaI	ACNGT	3 cut(s)	139, 217, 335
TaiI	ACGT	2 cut(s)	93, 99
TaqI	TCGA	1 cut(s)	12
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	3 cut(s)	180, 309, 324
Tru9I	TTAA	3 cut(s)	180, 309, 324
TseI	GCWGC	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	3 cut(s)	22, 184, 262
XagI	CCTNNNNNAGG	2 cut(s)	191, 293
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.